Wall clock time and date at job start Mon Mar 30 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47135 * 2 1 4 4 C 1.38236 * 119.99793 * 89.99988 * 3 2 1 5 5 C 1.38239 * 119.99753 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99850 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.99926 * 179.97438 * 6 5 4 8 8 H 1.09005 * 110.27697 * 337.90730 * 7 6 5 9 9 C 1.54946 * 110.31204 * 99.99580 * 7 6 5 10 10 C 1.55307 * 100.93989 * 155.45758 * 9 7 6 11 11 C 1.54373 * 102.25551 * 325.86944 * 10 9 7 12 12 C 1.53004 * 109.83244 * 140.96156 * 11 10 9 13 13 C 1.50701 * 109.83079 * 261.84107 * 11 10 9 14 14 H 1.07990 * 120.00318 * 354.36131 * 13 11 10 15 15 C 1.37882 * 119.99750 * 174.35381 * 13 11 10 16 16 N 1.31512 * 119.99934 * 159.23858 * 15 13 11 17 17 Si 1.86801 * 120.00095 * 339.23262 * 15 13 11 18 18 H 1.48506 * 109.46983 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47002 * 60.00376 * 17 15 13 20 20 H 1.48497 * 109.47541 * 299.99948 * 17 15 13 21 21 O 1.43236 * 107.58924 * 21.35634 * 11 10 9 22 22 C 1.38233 * 119.99695 * 0.25249 * 6 5 4 23 23 C 1.38229 * 119.99995 * 269.97336 * 3 2 1 24 24 H 1.08996 * 109.47114 * 300.00374 * 1 2 3 25 25 H 1.08999 * 109.46884 * 60.00301 * 1 2 3 26 26 H 1.08995 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47114 * 239.99626 * 2 1 3 28 28 H 1.09006 * 109.46362 * 120.00067 * 2 1 3 29 29 H 1.07998 * 120.00109 * 359.97156 * 4 3 2 30 30 H 1.08000 * 120.00068 * 179.97438 * 5 4 3 31 31 H 1.08997 * 111.12204 * 37.54083 * 9 7 6 32 32 H 1.08998 * 111.16250 * 273.39587 * 9 7 6 33 33 H 1.09001 * 110.84761 * 207.67414 * 10 9 7 34 34 H 1.09005 * 110.84621 * 84.06181 * 10 9 7 35 35 H 1.08998 * 109.47414 * 174.49781 * 12 11 10 36 36 H 1.09002 * 109.46603 * 294.50082 * 12 11 10 37 37 H 1.08999 * 109.47321 * 54.49485 * 12 11 10 38 38 H 0.97003 * 120.00054 * 354.90888 * 16 15 13 39 39 H 1.08004 * 119.99692 * 179.73208 * 22 6 5 40 40 H 1.08004 * 119.99901 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1972 6 6 2.9545 4.0272 -0.0001 7 6 3.4568 5.4480 -0.0001 8 1 3.2201 5.9323 0.9473 9 6 4.9853 5.4780 -0.2523 10 6 5.1589 6.9049 -0.8405 11 6 3.8453 7.0966 -1.6284 12 6 3.3468 8.5339 -1.4646 13 6 4.0763 6.7991 -3.0876 14 1 5.0740 6.5915 -3.4450 15 6 3.0138 6.7919 -3.9663 16 7 3.2256 6.9423 -5.2555 17 14 1.2734 6.5682 -3.3256 18 1 0.3194 6.5979 -4.4633 19 1 0.9492 7.6663 -2.3798 20 1 1.1678 5.2635 -2.6243 21 8 2.8818 6.1822 -1.0927 22 6 2.7186 3.3774 -1.1971 23 6 2.2633 2.0722 -1.1971 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0823 1.5635 2.1325 30 1 2.9037 3.8848 2.1325 31 1 5.2792 4.7168 -0.9750 32 1 5.5401 5.3669 0.6793 33 1 6.0206 6.9477 -1.5066 34 1 5.2454 7.6447 -0.0446 35 1 2.4749 8.6907 -2.0997 36 1 3.0740 8.7073 -0.4236 37 1 4.1363 9.2275 -1.7537 38 1 4.1194 7.1319 -5.5813 39 1 2.8944 3.8880 -2.1325 40 1 2.0833 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310409086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:41 Heat of formation + Delta-G solvation = -54.955528 kcal Electronic energy + Delta-G solvation = -19968.331881 eV Core-core repulsion = 17132.438592 eV Total energy + Delta-G solvation = -2835.893289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99310 -39.68985 -35.64118 -34.69677 -32.98576 -32.44790 -31.75721 -30.02965 -27.07319 -26.26249 -24.15669 -23.60140 -22.59958 -21.32261 -21.04761 -19.64898 -17.56231 -17.33615 -16.24843 -15.99566 -15.86443 -15.54723 -14.90668 -14.70541 -14.58053 -14.42857 -14.23846 -14.08082 -13.98208 -13.63954 -13.39265 -12.84666 -12.73054 -12.54431 -12.15986 -12.09809 -12.08282 -11.82948 -11.78273 -11.64003 -11.56535 -11.31986 -11.01037 -10.52586 -10.09997 -9.76264 -9.32767 -8.70597 -6.42588 0.43016 0.55719 1.50087 1.55521 1.83108 2.50851 2.79568 3.00298 3.43009 3.77210 3.91249 3.96515 4.01044 4.13867 4.21835 4.29936 4.46128 4.52329 4.54884 4.63592 4.70138 4.75874 4.75998 4.76529 4.84808 4.95252 5.05959 5.09211 5.11881 5.14736 5.20166 5.23003 5.33851 5.40827 5.56994 5.59679 5.76683 5.84345 5.98454 6.09200 6.17741 6.38894 6.80286 7.36869 8.61530 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.007026 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.910154 B = 3983.969265 C = 4689.027888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.101 4.101 7 C 0.114 3.886 8 H 0.091 0.909 9 C -0.127 4.127 10 C -0.129 4.129 11 C 0.187 3.813 12 C -0.142 4.142 13 C -0.599 4.599 14 H 0.025 0.975 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 1.098 2.902 18 H -0.318 1.318 19 H -0.259 1.259 20 H -0.267 1.267 21 O -0.398 6.398 22 C -0.113 4.113 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -10.566 17.082 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.101 4.101 7 C 0.057 3.943 8 H 0.108 0.892 9 C -0.164 4.164 10 C -0.166 4.166 11 C 0.149 3.851 12 C -0.200 4.200 13 C -0.636 4.636 14 H 0.043 0.957 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.926 3.074 18 H -0.248 1.248 19 H -0.185 1.185 20 H -0.193 1.193 21 O -0.319 6.319 22 C -0.132 4.132 23 C -0.156 4.156 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.760 -10.738 16.539 20.074 hybrid contribution 2.188 0.540 -0.760 2.379 sum -1.572 -10.197 15.779 18.853 Atomic orbital electron populations 1.21741 0.94327 1.02474 1.01701 1.20575 0.96449 0.90977 1.03737 1.20202 0.98525 0.97489 0.92566 1.21278 0.99717 0.94478 0.98278 1.21198 0.98994 0.95487 0.97010 1.20035 1.00694 0.95466 0.93907 1.21862 0.92374 0.88841 0.91256 0.89172 1.23080 0.95376 0.96582 1.01382 1.22993 0.97697 0.97051 0.98884 1.20118 0.86225 0.87082 0.91649 1.22203 1.00659 0.96879 1.00251 1.22231 0.94174 1.53399 0.93799 0.95666 1.26808 1.07950 0.91308 0.93538 1.70992 1.24141 1.45744 1.16128 0.83308 0.71337 0.79519 0.73276 1.24775 1.18476 1.19340 1.88229 1.40031 1.54939 1.48746 1.21083 0.98870 0.95057 0.98154 1.21163 1.01216 0.94401 0.98811 0.92382 0.94056 0.90648 0.91001 0.89051 0.82895 0.83360 0.93173 0.87707 0.92573 0.89527 0.94625 0.92119 0.92356 0.93545 0.89134 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.90 71.98 0.71 -1.82 16 2 C -0.08 -1.49 6.06 29.85 0.18 -1.31 16 3 C -0.09 -2.27 5.13 -19.87 -0.10 -2.37 16 4 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 5 C -0.11 -2.89 9.69 22.27 0.22 -2.67 16 6 C -0.10 -3.52 5.03 -19.87 -0.10 -3.62 16 7 C 0.11 4.11 3.64 30.51 0.11 4.22 16 8 H 0.09 2.73 8.06 -2.38 -0.02 2.72 16 9 C -0.13 -4.35 6.56 32.05 0.21 -4.14 16 10 C -0.13 -4.92 6.08 31.85 0.19 -4.73 16 11 C 0.19 8.77 0.78 -11.07 -0.01 8.76 16 12 C -0.14 -6.16 8.44 71.98 0.61 -5.55 16 13 C -0.60 -34.56 8.62 25.60 0.22 -34.34 16 14 H 0.03 1.59 7.70 -2.92 -0.02 1.56 16 15 C 0.00 0.27 5.25 84.66 0.44 0.72 16 16 N -0.93 -60.39 13.70 21.45 0.29 -60.10 16 17 Si 1.10 57.67 24.80 68.60 1.70 59.37 16 18 H -0.32 -17.02 7.11 99.48 0.71 -16.31 16 19 H -0.26 -12.65 5.90 99.48 0.59 -12.06 16 20 H -0.27 -13.75 6.25 99.48 0.62 -13.13 16 21 O -0.40 -18.25 5.96 -148.98 -0.89 -19.14 16 22 C -0.11 -4.50 9.14 22.27 0.20 -4.30 16 23 C -0.14 -4.55 9.70 22.27 0.22 -4.33 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 28 H 0.09 1.31 8.09 -2.38 -0.02 1.29 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 32 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 33 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16 34 H 0.09 2.74 7.85 -2.38 -0.02 2.72 16 35 H 0.03 1.67 5.11 -2.39 -0.01 1.65 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.26 16.50 8.73 -92.71 -0.81 15.69 16 39 H 0.09 4.37 7.20 -2.91 -0.02 4.35 16 40 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -70.08 316.92 5.18 -64.90 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.75 Total: 13.05 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 3.32 Total: -58.08 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.29 Total: -60.10 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.89 Total: -19.14 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.70 Total: 59.37 kcal Total: -70.08 5.18 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.947 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds