Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38231 * 119.99547 * 179.80645 * 4 3 2 6 6 C 1.38242 * 120.00367 * 0.42205 * 5 4 3 7 7 C 1.50697 * 120.00024 * 179.78894 * 6 5 4 8 8 H 1.09004 * 110.27126 * 207.11131 * 7 6 5 9 9 C 1.54945 * 110.30931 * 85.02057 * 7 6 5 10 10 C 1.55303 * 100.94024 * 204.63791 * 9 7 6 11 11 C 1.54374 * 102.25441 * 34.13268 * 10 9 7 12 12 C 1.52999 * 109.82952 * 98.15676 * 11 10 9 13 13 C 1.50700 * 109.83529 * 219.12901 * 11 10 9 14 14 H 1.08008 * 119.99362 * 0.02562 * 13 11 10 15 15 C 1.37871 * 120.00594 * 180.02562 * 13 11 10 16 16 N 1.31513 * 119.99844 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00210 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47392 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47297 * 120.00035 * 17 15 13 20 20 H 1.48500 * 109.46822 * 239.99613 * 17 15 13 21 21 O 1.43237 * 107.59063 * 338.64159 * 11 10 9 22 22 C 1.38234 * 119.99671 * 359.80713 * 6 5 4 23 23 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 29 29 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00052 * 180.20447 * 5 4 3 31 31 H 1.08995 * 111.12569 * 322.56020 * 9 7 6 32 32 H 1.09002 * 111.12263 * 86.71957 * 9 7 6 33 33 H 1.08996 * 110.84700 * 152.32785 * 10 9 7 34 34 H 1.09007 * 110.85106 * 275.74045 * 10 9 7 35 35 H 1.09001 * 109.47304 * 60.00164 * 12 11 10 36 36 H 1.09006 * 109.47267 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47490 * 299.99810 * 12 11 10 38 38 H 0.97005 * 120.00342 * 180.02562 * 16 15 13 39 39 H 1.07994 * 119.99943 * 179.97438 * 22 6 5 40 40 H 1.08004 * 119.99828 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7251 3.3751 -1.1972 6 6 2.9547 4.0272 -0.0001 7 6 3.4574 5.4478 -0.0002 8 1 4.0219 5.6487 0.9104 9 6 2.2722 6.4377 -0.1277 10 6 2.9847 7.6729 -0.7431 11 6 4.0568 7.0191 -1.6410 12 6 3.5632 6.9721 -3.0884 13 6 5.3394 7.8062 -1.5619 14 1 5.3957 8.6854 -0.9371 15 6 6.4410 7.4042 -2.2870 16 7 6.3726 6.3333 -3.0474 17 14 8.0310 8.3796 -2.1883 18 1 7.8486 9.5320 -1.2697 19 1 9.1171 7.5054 -1.6770 20 1 8.3912 8.8771 -3.5404 21 8 4.2730 5.6881 -1.1580 22 6 2.7234 3.3759 1.1971 23 6 2.2627 2.0726 1.1971 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5597 -2.1324 30 1 2.9062 3.8839 -2.1326 31 1 1.5071 6.0499 -0.8003 32 1 1.8506 6.6737 0.8494 33 1 2.2894 8.2654 -1.3376 34 1 3.4448 8.2827 0.0345 35 1 3.3690 7.9857 -3.4392 36 1 4.3240 6.5092 -3.7170 37 1 2.6447 6.3875 -3.1404 38 1 7.1477 6.0502 -3.5573 39 1 2.9031 3.8851 2.1323 40 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310409088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = -37.537065 kcal Electronic energy + Delta-G solvation = -19638.774903 eV Core-core repulsion = 16803.636935 eV Total energy + Delta-G solvation = -2835.137968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43044 -37.99529 -34.27797 -32.76872 -31.02956 -30.54280 -30.36807 -28.36445 -25.32803 -24.85057 -22.87388 -22.32101 -21.15523 -19.87012 -19.30719 -16.42653 -16.08265 -15.69348 -14.96656 -14.71984 -14.35270 -13.80792 -13.48839 -13.46667 -13.20046 -12.95416 -12.59994 -12.16634 -12.12391 -11.91551 -11.64357 -11.16511 -11.11588 -11.02082 -10.92753 -10.76479 -10.62612 -10.44178 -10.34185 -10.10091 -9.91441 -9.50845 -9.08295 -8.51651 -8.46134 -8.17249 -7.76195 -5.92028 -4.08564 1.70678 1.81818 3.31030 3.39528 3.42545 4.11179 4.44784 4.86895 4.94756 5.01547 5.32182 5.32804 5.36680 5.43760 5.53315 5.55675 5.60026 5.77937 5.80558 5.82902 5.88863 6.12557 6.14642 6.24777 6.27625 6.33899 6.42572 6.52701 6.58932 6.69335 6.82124 6.86982 6.92999 6.97988 7.11963 7.19945 7.42239 7.45393 7.81631 8.12701 8.39791 8.66562 9.07843 9.62944 11.09640 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.004973 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.169077 B = 5628.695681 C = 5858.143654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.071 4.071 7 C 0.112 3.888 8 H 0.061 0.939 9 C -0.145 4.145 10 C -0.141 4.141 11 C 0.227 3.773 12 C -0.138 4.138 13 C -0.534 4.534 14 H 0.058 0.942 15 C 0.081 3.919 16 N -0.860 5.860 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 O -0.344 6.344 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.090 0.910 37 H 0.011 0.989 38 H 0.258 0.742 39 H 0.117 0.883 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 -8.314 5.673 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.072 4.072 7 C 0.054 3.946 8 H 0.078 0.922 9 C -0.183 4.183 10 C -0.179 4.179 11 C 0.190 3.810 12 C -0.196 4.196 13 C -0.572 4.572 14 H 0.076 0.924 15 C -0.124 4.124 16 N -0.496 5.496 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 O -0.263 6.263 22 C -0.135 4.135 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.938 -8.568 5.440 14.204 hybrid contribution 0.837 0.678 0.187 1.093 sum -9.101 -7.889 5.627 13.294 Atomic orbital electron populations 1.21743 0.95119 1.01202 1.02196 1.20484 0.95863 0.93163 1.02374 1.19779 1.00591 0.95953 0.93396 1.21004 1.00792 0.95158 0.97109 1.21133 0.96324 0.94026 0.98906 1.20141 0.97590 0.96346 0.93080 1.21554 0.90875 0.89359 0.92858 0.92163 1.23217 0.97813 0.96808 1.00414 1.23232 0.98185 0.96752 0.99702 1.19656 0.92019 0.79593 0.89708 1.21979 0.98866 0.98832 0.99932 1.21322 0.96609 1.11071 1.28182 0.92350 1.24991 0.98521 0.94428 0.94437 1.69957 1.29490 1.22912 1.27263 0.86648 0.83955 0.80181 0.77791 1.19791 1.20948 1.20991 1.88780 1.62211 1.34071 1.41251 1.20905 1.00439 0.94677 0.97460 1.20827 1.01494 0.94889 0.97058 0.92802 0.92571 0.92694 0.91479 0.91347 0.86644 0.85109 0.91546 0.91858 0.92139 0.91722 0.94602 0.89137 0.96999 0.93167 0.86511 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.08 -0.88 6.07 -27.88 -0.17 -1.05 16 3 C -0.10 -1.36 5.13 -104.62 -0.54 -1.90 16 4 C -0.12 -1.92 9.70 -39.58 -0.38 -2.30 16 5 C -0.09 -1.59 9.37 -39.58 -0.37 -1.96 16 6 C -0.07 -1.33 5.06 -104.62 -0.53 -1.86 16 7 C 0.11 2.33 3.65 -26.86 -0.10 2.23 16 8 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 9 C -0.14 -2.67 6.56 -24.48 -0.16 -2.83 16 10 C -0.14 -2.93 6.07 -24.79 -0.15 -3.09 16 11 C 0.23 5.68 0.82 -91.05 -0.07 5.61 16 12 C -0.14 -3.36 8.51 37.16 0.32 -3.05 16 13 C -0.53 -14.74 8.23 -34.44 -0.28 -15.03 16 14 H 0.06 1.59 7.52 -52.48 -0.39 1.20 16 15 C 0.08 2.27 5.26 -17.82 -0.09 2.17 16 16 N -0.86 -24.79 10.92 55.43 0.61 -24.18 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 O -0.34 -8.78 8.94 -35.23 -0.31 -9.10 16 22 C -0.12 -1.86 9.71 -39.58 -0.38 -2.24 16 23 C -0.12 -1.76 9.70 -39.58 -0.38 -2.15 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.13 2.65 7.54 -52.48 -0.40 2.25 16 31 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.17 7.82 -51.93 -0.41 0.76 16 34 H 0.06 1.34 7.66 -51.92 -0.40 0.94 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -29.63 324.63 -9.30 -38.92 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.52 Total: 1.62 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.94 Total: -28.45 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.61 Total: -24.18 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.31 Total: -9.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.63 -9.30 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.387 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds