Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38231 * 119.99547 * 179.80645 * 4 3 2 6 6 C 1.38242 * 120.00367 * 0.42205 * 5 4 3 7 7 C 1.50697 * 120.00024 * 179.78894 * 6 5 4 8 8 H 1.09004 * 110.27126 * 207.11131 * 7 6 5 9 9 C 1.54945 * 110.30931 * 85.02057 * 7 6 5 10 10 C 1.55303 * 100.94024 * 204.63791 * 9 7 6 11 11 C 1.54374 * 102.25441 * 34.13268 * 10 9 7 12 12 C 1.52999 * 109.82952 * 98.15676 * 11 10 9 13 13 C 1.50700 * 109.83529 * 219.12901 * 11 10 9 14 14 H 1.08008 * 119.99362 * 0.02562 * 13 11 10 15 15 C 1.37871 * 120.00594 * 180.02562 * 13 11 10 16 16 N 1.31513 * 119.99844 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00210 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47392 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47297 * 120.00035 * 17 15 13 20 20 H 1.48500 * 109.46822 * 239.99613 * 17 15 13 21 21 O 1.43237 * 107.59063 * 338.64159 * 11 10 9 22 22 C 1.38234 * 119.99671 * 359.80713 * 6 5 4 23 23 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 29 29 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.00052 * 180.20447 * 5 4 3 31 31 H 1.08995 * 111.12569 * 322.56020 * 9 7 6 32 32 H 1.09002 * 111.12263 * 86.71957 * 9 7 6 33 33 H 1.08996 * 110.84700 * 152.32785 * 10 9 7 34 34 H 1.09007 * 110.85106 * 275.74045 * 10 9 7 35 35 H 1.09001 * 109.47304 * 60.00164 * 12 11 10 36 36 H 1.09006 * 109.47267 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47490 * 299.99810 * 12 11 10 38 38 H 0.97005 * 120.00342 * 180.02562 * 16 15 13 39 39 H 1.07994 * 119.99943 * 179.97438 * 22 6 5 40 40 H 1.08004 * 119.99828 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7251 3.3751 -1.1972 6 6 2.9547 4.0272 -0.0001 7 6 3.4574 5.4478 -0.0002 8 1 4.0219 5.6487 0.9104 9 6 2.2722 6.4377 -0.1277 10 6 2.9847 7.6729 -0.7431 11 6 4.0568 7.0191 -1.6410 12 6 3.5632 6.9721 -3.0884 13 6 5.3394 7.8062 -1.5619 14 1 5.3957 8.6854 -0.9371 15 6 6.4410 7.4042 -2.2870 16 7 6.3726 6.3333 -3.0474 17 14 8.0310 8.3796 -2.1883 18 1 7.8486 9.5320 -1.2697 19 1 9.1171 7.5054 -1.6770 20 1 8.3912 8.8771 -3.5404 21 8 4.2730 5.6881 -1.1580 22 6 2.7234 3.3759 1.1971 23 6 2.2627 2.0726 1.1971 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5597 -2.1324 30 1 2.9062 3.8839 -2.1326 31 1 1.5071 6.0499 -0.8003 32 1 1.8506 6.6737 0.8494 33 1 2.2894 8.2654 -1.3376 34 1 3.4448 8.2827 0.0345 35 1 3.3690 7.9857 -3.4392 36 1 4.3240 6.5092 -3.7170 37 1 2.6447 6.3875 -3.1404 38 1 7.1477 6.0502 -3.5573 39 1 2.9031 3.8851 2.1323 40 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310409088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = -52.067275 kcal Electronic energy + Delta-G solvation = -19639.404980 eV Core-core repulsion = 16803.636935 eV Total energy + Delta-G solvation = -2835.768045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84309 -39.52609 -35.58140 -34.53296 -32.78319 -31.99917 -31.69807 -29.79007 -27.34423 -26.33803 -24.13710 -23.56687 -22.51276 -21.28892 -21.06496 -18.43952 -17.41440 -17.20707 -16.56312 -16.13267 -15.78511 -15.43054 -14.89180 -14.53237 -14.38748 -14.31225 -14.00025 -13.95045 -13.69496 -13.17626 -13.13069 -12.87882 -12.80038 -12.57706 -12.31856 -12.20912 -12.15590 -12.02300 -11.86045 -11.59753 -11.42079 -11.26877 -10.95070 -10.56688 -9.82841 -9.75344 -9.26834 -8.01418 -6.25362 0.46861 0.57468 1.39227 1.41403 1.52051 2.43316 2.84420 3.14010 3.60759 3.85866 3.95054 4.00238 4.03120 4.21236 4.27516 4.36671 4.53491 4.57717 4.63011 4.67668 4.76043 4.78904 4.85663 4.93462 4.97648 5.09805 5.11439 5.12872 5.17585 5.21774 5.29121 5.30029 5.43379 5.48949 5.60870 5.68360 5.77597 5.89983 6.11960 6.19572 6.35246 6.68219 7.14997 7.51077 8.98862 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.004973 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.169077 B = 5628.695681 C = 5858.143654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.128 4.128 5 C -0.110 4.110 6 C -0.095 4.095 7 C 0.104 3.896 8 H 0.054 0.946 9 C -0.129 4.129 10 C -0.137 4.137 11 C 0.212 3.788 12 C -0.129 4.129 13 C -0.554 4.554 14 H 0.054 0.946 15 C 0.032 3.968 16 N -0.890 5.890 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.278 1.278 21 O -0.378 6.378 22 C -0.119 4.119 23 C -0.120 4.120 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.257 0.743 39 H 0.135 0.865 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 -9.419 7.483 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.146 4.146 5 C -0.129 4.129 6 C -0.095 4.095 7 C 0.046 3.954 8 H 0.072 0.928 9 C -0.166 4.166 10 C -0.175 4.175 11 C 0.175 3.825 12 C -0.187 4.187 13 C -0.591 4.591 14 H 0.073 0.927 15 C -0.170 4.170 16 N -0.527 5.527 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.203 1.203 21 O -0.298 6.298 22 C -0.137 4.137 23 C -0.137 4.137 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.153 0.847 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.153 -9.664 7.257 16.445 hybrid contribution 1.173 0.938 -0.346 1.541 sum -9.979 -8.726 6.911 14.950 Atomic orbital electron populations 1.21726 0.93975 1.02453 1.01862 1.20568 0.96712 0.90875 1.03608 1.20201 0.98823 0.97467 0.92596 1.21181 1.00514 0.94134 0.98795 1.20988 0.98607 0.95497 0.97764 1.20047 0.99599 0.95612 0.94272 1.21726 0.91150 0.91631 0.90906 0.92807 1.23135 0.96851 0.94730 1.01917 1.23134 0.97515 0.97597 0.99239 1.19747 0.92323 0.79811 0.90622 1.21840 0.98389 0.98941 0.99559 1.21724 0.98154 1.11342 1.27921 0.92736 1.25737 1.01644 0.95367 0.94242 1.70117 1.30107 1.24382 1.28104 0.85676 0.79983 0.78899 0.78008 1.19019 1.21101 1.20324 1.88704 1.63920 1.34105 1.43050 1.21132 1.00027 0.95506 0.97018 1.21233 0.99842 0.94128 0.98538 0.90808 0.93408 0.92570 0.89693 0.90759 0.85290 0.88332 0.91285 0.88679 0.90692 0.91851 0.94015 0.92304 0.95628 0.93406 0.84681 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.08 -1.46 6.07 29.85 0.18 -1.28 16 3 C -0.09 -2.32 5.13 -19.86 -0.10 -2.43 16 4 C -0.13 -3.94 9.70 22.27 0.22 -3.72 16 5 C -0.11 -4.19 9.37 22.27 0.21 -3.98 16 6 C -0.10 -3.54 5.06 -19.87 -0.10 -3.64 16 7 C 0.10 4.36 3.65 30.51 0.11 4.47 16 8 H 0.05 2.26 8.09 -2.38 -0.02 2.24 16 9 C -0.13 -4.63 6.56 32.05 0.21 -4.42 16 10 C -0.14 -5.66 6.07 31.85 0.19 -5.46 16 11 C 0.21 10.85 0.82 -11.07 -0.01 10.84 16 12 C -0.13 -6.49 8.51 71.98 0.61 -5.88 16 13 C -0.55 -31.20 8.23 25.60 0.21 -30.99 16 14 H 0.05 3.01 7.52 -2.91 -0.02 2.99 16 15 C 0.03 1.83 5.26 84.65 0.45 2.27 16 16 N -0.89 -53.12 10.92 21.44 0.23 -52.88 16 17 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 O -0.38 -20.00 8.94 -148.98 -1.33 -21.33 16 22 C -0.12 -3.56 9.71 22.27 0.22 -3.35 16 23 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 28 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.10 4.29 7.54 -2.91 -0.02 4.27 16 31 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.07 2.82 7.82 -2.39 -0.02 2.80 16 34 H 0.06 2.59 7.66 -2.38 -0.02 2.57 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 3.32 6.01 -2.38 -0.01 3.30 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 39 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -65.78 324.63 5.24 -60.54 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.99 Total: 18.98 kcal Atomic # 6 Polarization: -55.22 SS G_CDS: 3.32 Total: -51.90 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.23 Total: -52.88 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.33 Total: -21.33 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.78 5.24 -60.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.476 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds