Wall clock time and date at job start Mon Mar 30 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47511 * 2 1 4 4 C 1.38231 * 119.99936 * 89.99758 * 3 2 1 5 5 C 1.38233 * 119.99890 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99775 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.67758 * 337.02703 * 7 6 5 9 9 C 1.54998 * 110.61941 * 99.99881 * 7 6 5 10 10 C 1.54817 * 102.12466 * 155.53916 * 9 7 6 11 11 C 1.54100 * 104.18606 * 339.09929 * 10 9 7 12 12 C 1.52992 * 109.87950 * 238.39547 * 11 10 9 13 13 C 1.50704 * 109.87776 * 117.39617 * 11 10 9 14 14 H 1.08002 * 119.99785 * 359.97438 * 13 11 10 15 15 C 1.37873 * 119.99944 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00091 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99798 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47480 * 59.99770 * 17 15 13 19 19 H 1.48507 * 109.46890 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47247 * 299.99489 * 17 15 13 21 21 O 1.43746 * 107.29659 * 357.97343 * 11 10 9 22 22 C 1.38235 * 119.99899 * 0.27045 * 6 5 4 23 23 C 1.38234 * 119.99796 * 269.98055 * 3 2 1 24 24 H 1.09002 * 109.47189 * 300.00475 * 1 2 3 25 25 H 1.09000 * 109.47136 * 60.00295 * 1 2 3 26 26 H 1.09004 * 109.47448 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47547 * 239.99909 * 2 1 3 28 28 H 1.08999 * 109.47303 * 120.00228 * 2 1 3 29 29 H 1.07997 * 120.00055 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.00397 * 179.97438 * 5 4 3 31 31 H 1.09002 * 110.90913 * 37.32131 * 9 7 6 32 32 H 1.08997 * 110.90321 * 273.75248 * 9 7 6 33 33 H 1.08991 * 110.48506 * 97.77523 * 10 9 7 34 34 H 1.08995 * 110.48134 * 220.29142 * 10 9 7 35 35 H 1.08999 * 109.47436 * 60.00000 * 12 11 10 36 36 H 1.09005 * 109.47578 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47518 * 300.00178 * 12 11 10 38 38 H 0.97000 * 119.99490 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00237 * 179.73250 * 22 6 5 40 40 H 1.08006 * 120.00263 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9556 4.0268 -0.0001 7 6 3.4591 5.4471 0.0000 8 1 3.2121 5.9430 0.9387 9 6 4.9882 5.4842 -0.2512 10 6 5.1871 6.9034 -0.8371 11 6 3.7899 7.2981 -1.3535 12 6 3.8567 7.6072 -2.8504 13 6 3.2884 8.5049 -0.6031 14 1 3.8978 8.9532 0.1677 15 6 2.0512 9.0361 -0.8999 16 7 1.3089 8.4900 -1.8382 17 14 1.4299 10.5325 0.0298 18 1 2.3659 11.6668 -0.1756 19 1 0.0836 10.9048 -0.4746 20 1 1.3461 10.2158 1.4782 21 8 2.9167 6.1802 -1.1207 22 6 2.7204 3.3768 -1.1972 23 6 2.2632 2.0723 -1.1972 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0823 1.5635 2.1324 30 1 2.9037 3.8848 2.1323 31 1 5.2827 4.7211 -0.9717 32 1 5.5386 5.3682 0.6824 33 1 5.5160 7.5939 -0.0607 34 1 5.9063 6.8806 -1.6558 35 1 4.2030 6.7249 -3.3886 36 1 2.8654 7.8850 -3.2086 37 1 4.5491 8.4316 -3.0206 38 1 0.4387 8.8640 -2.0472 39 1 2.8971 3.8871 -2.1325 40 1 2.0838 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310409090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:47 Heat of formation + Delta-G solvation = -37.356552 kcal Electronic energy + Delta-G solvation = -19624.877506 eV Core-core repulsion = 16789.747366 eV Total energy + Delta-G solvation = -2835.130140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39719 -37.96236 -34.28008 -32.71615 -30.93937 -30.54238 -30.42920 -28.40747 -25.23359 -24.90723 -22.83320 -22.34633 -21.10990 -19.82433 -19.30337 -16.44995 -16.03884 -15.63907 -14.96560 -14.68889 -14.32604 -13.79136 -13.51516 -13.44256 -13.09788 -12.93908 -12.61090 -12.48578 -12.26207 -11.69862 -11.41479 -11.17241 -11.12518 -10.95741 -10.87775 -10.76905 -10.64301 -10.48888 -10.35319 -10.11230 -9.82944 -9.43292 -9.14191 -8.52817 -8.45284 -8.16138 -7.83209 -5.91380 -4.09052 1.69855 1.80336 3.32577 3.37807 3.39726 4.10246 4.44180 4.88148 4.95886 5.03197 5.32880 5.33940 5.37784 5.43317 5.57101 5.60135 5.64497 5.79287 5.82438 5.87841 5.90056 6.11470 6.17917 6.25932 6.32951 6.37266 6.43867 6.55213 6.64393 6.73657 6.84393 6.89943 6.93796 6.96715 7.12375 7.18906 7.40463 7.49840 7.81172 8.07927 8.38314 8.62805 9.00589 9.62994 11.09708 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.005309 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.762695 B = 5273.180457 C = 5639.820049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.124 4.124 5 C -0.114 4.114 6 C -0.065 4.065 7 C 0.116 3.884 8 H 0.066 0.934 9 C -0.142 4.142 10 C -0.143 4.143 11 C 0.224 3.776 12 C -0.130 4.130 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.082 3.918 16 N -0.860 5.860 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.346 6.346 22 C -0.088 4.088 23 C -0.123 4.123 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.128 0.872 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -13.218 3.113 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.142 4.142 5 C -0.132 4.132 6 C -0.065 4.065 7 C 0.057 3.943 8 H 0.084 0.916 9 C -0.180 4.180 10 C -0.180 4.180 11 C 0.187 3.813 12 C -0.187 4.187 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.123 4.123 16 N -0.496 5.496 17 Si 0.713 3.287 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 O -0.266 6.266 22 C -0.106 4.106 23 C -0.141 4.141 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.021 -13.245 2.874 13.703 hybrid contribution -0.225 1.003 0.714 1.252 sum 1.796 -12.242 3.588 12.883 Atomic orbital electron populations 1.21751 0.95031 1.01197 1.02427 1.20479 0.95987 0.93076 1.02234 1.19780 1.00490 0.96032 0.93387 1.20839 1.01280 0.94938 0.97102 1.20941 0.99908 0.94807 0.97563 1.19971 0.97930 0.95522 0.93090 1.21605 0.91110 0.87836 0.93702 0.91620 1.23074 0.96557 0.98143 1.00199 1.23096 1.00233 0.94861 0.99855 1.19618 0.83459 0.85154 0.93073 1.21777 1.03505 0.97243 0.96191 1.21413 1.03062 1.12616 1.21070 0.92670 1.24978 0.96601 0.96215 0.94511 1.69939 1.10695 1.39358 1.29644 0.86785 0.78022 0.83413 0.80441 1.20246 1.21236 1.20273 1.89069 1.50313 1.40566 1.46630 1.21071 0.97277 0.93574 0.98677 1.20986 1.00923 0.95107 0.97116 0.92589 0.92471 0.92804 0.91426 0.91510 0.86714 0.86362 0.91943 0.92085 0.91780 0.92797 0.96762 0.89120 0.94351 0.93053 0.85411 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.15 0.37 -1.12 16 2 C -0.08 -0.86 6.06 -27.89 -0.17 -1.03 16 3 C -0.10 -1.35 5.13 -104.62 -0.54 -1.89 16 4 C -0.12 -1.76 9.70 -39.59 -0.38 -2.15 16 5 C -0.11 -1.86 9.70 -39.58 -0.38 -2.24 16 6 C -0.06 -1.22 5.06 -104.62 -0.53 -1.75 16 7 C 0.12 2.47 3.49 -26.83 -0.09 2.38 16 8 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 9 C -0.14 -2.67 6.57 -24.72 -0.16 -2.84 16 10 C -0.14 -3.00 6.26 -25.20 -0.16 -3.15 16 11 C 0.22 5.62 0.74 -91.20 -0.07 5.56 16 12 C -0.13 -3.17 8.45 37.15 0.31 -2.86 16 13 C -0.54 -14.92 8.19 -34.44 -0.28 -15.20 16 14 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 15 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 16 N -0.86 -24.85 10.93 55.43 0.61 -24.24 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 O -0.35 -8.87 9.29 -35.23 -0.33 -9.20 16 22 C -0.09 -1.59 9.38 -39.58 -0.37 -1.96 16 23 C -0.12 -1.88 9.70 -39.58 -0.38 -2.27 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.33 7.39 -51.93 -0.38 0.95 16 34 H 0.05 1.04 7.70 -51.93 -0.40 0.64 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 2.46 6.00 -51.93 -0.31 2.15 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 2.44 7.64 -52.49 -0.40 2.04 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -29.58 324.38 -9.29 -38.87 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.50 Total: 1.72 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -2.93 Total: -28.33 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.61 Total: -24.24 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.33 Total: -9.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.58 -9.29 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.516 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds