Wall clock time and date at job start Mon Mar 30 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47511 * 2 1 4 4 C 1.38231 * 119.99936 * 89.99758 * 3 2 1 5 5 C 1.38233 * 119.99890 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99775 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.67758 * 337.02703 * 7 6 5 9 9 C 1.54998 * 110.61941 * 99.99881 * 7 6 5 10 10 C 1.54817 * 102.12466 * 155.53916 * 9 7 6 11 11 C 1.54100 * 104.18606 * 339.09929 * 10 9 7 12 12 C 1.52992 * 109.87950 * 238.39547 * 11 10 9 13 13 C 1.50704 * 109.87776 * 117.39617 * 11 10 9 14 14 H 1.08002 * 119.99785 * 359.97438 * 13 11 10 15 15 C 1.37873 * 119.99944 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00091 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99798 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47480 * 59.99770 * 17 15 13 19 19 H 1.48507 * 109.46890 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47247 * 299.99489 * 17 15 13 21 21 O 1.43746 * 107.29659 * 357.97343 * 11 10 9 22 22 C 1.38235 * 119.99899 * 0.27045 * 6 5 4 23 23 C 1.38234 * 119.99796 * 269.98055 * 3 2 1 24 24 H 1.09002 * 109.47189 * 300.00475 * 1 2 3 25 25 H 1.09000 * 109.47136 * 60.00295 * 1 2 3 26 26 H 1.09004 * 109.47448 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47547 * 239.99909 * 2 1 3 28 28 H 1.08999 * 109.47303 * 120.00228 * 2 1 3 29 29 H 1.07997 * 120.00055 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.00397 * 179.97438 * 5 4 3 31 31 H 1.09002 * 110.90913 * 37.32131 * 9 7 6 32 32 H 1.08997 * 110.90321 * 273.75248 * 9 7 6 33 33 H 1.08991 * 110.48506 * 97.77523 * 10 9 7 34 34 H 1.08995 * 110.48134 * 220.29142 * 10 9 7 35 35 H 1.08999 * 109.47436 * 60.00000 * 12 11 10 36 36 H 1.09005 * 109.47578 * 179.97438 * 12 11 10 37 37 H 1.09000 * 109.47518 * 300.00178 * 12 11 10 38 38 H 0.97000 * 119.99490 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00237 * 179.73250 * 22 6 5 40 40 H 1.08006 * 120.00263 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9556 4.0268 -0.0001 7 6 3.4591 5.4471 0.0000 8 1 3.2121 5.9430 0.9387 9 6 4.9882 5.4842 -0.2512 10 6 5.1871 6.9034 -0.8371 11 6 3.7899 7.2981 -1.3535 12 6 3.8567 7.6072 -2.8504 13 6 3.2884 8.5049 -0.6031 14 1 3.8978 8.9532 0.1677 15 6 2.0512 9.0361 -0.8999 16 7 1.3089 8.4900 -1.8382 17 14 1.4299 10.5325 0.0298 18 1 2.3659 11.6668 -0.1756 19 1 0.0836 10.9048 -0.4746 20 1 1.3461 10.2158 1.4782 21 8 2.9167 6.1802 -1.1207 22 6 2.7204 3.3768 -1.1972 23 6 2.2632 2.0723 -1.1972 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0823 1.5635 2.1324 30 1 2.9037 3.8848 2.1323 31 1 5.2827 4.7211 -0.9717 32 1 5.5386 5.3682 0.6824 33 1 5.5160 7.5939 -0.0607 34 1 5.9063 6.8806 -1.6558 35 1 4.2030 6.7249 -3.3886 36 1 2.8654 7.8850 -3.2086 37 1 4.5491 8.4316 -3.0206 38 1 0.4387 8.8640 -2.0472 39 1 2.8971 3.8871 -2.1325 40 1 2.0838 1.5629 -2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310409090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:46 Heat of formation + Delta-G solvation = -51.830275 kcal Electronic energy + Delta-G solvation = -19625.505134 eV Core-core repulsion = 16789.747366 eV Total energy + Delta-G solvation = -2835.757768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80113 -39.52458 -35.57338 -34.50676 -32.71532 -32.02897 -31.74189 -29.83504 -27.30264 -26.35793 -24.10314 -23.58967 -22.49849 -21.22638 -21.10049 -18.46897 -17.36742 -17.13145 -16.59808 -16.15014 -15.72621 -15.36469 -14.99513 -14.57963 -14.41869 -14.28372 -14.10856 -13.89135 -13.65418 -13.33968 -13.06908 -12.81955 -12.73270 -12.51787 -12.36690 -12.24961 -12.17182 -12.03810 -11.76406 -11.60453 -11.42031 -11.19591 -11.01351 -10.56388 -9.88955 -9.76048 -9.30334 -8.01064 -6.25670 0.45638 0.56602 1.40165 1.40957 1.48383 2.42584 2.84293 3.15699 3.57739 3.88109 3.98178 4.01739 4.05670 4.22195 4.30348 4.36136 4.52793 4.56921 4.64822 4.67355 4.76076 4.80879 4.86853 4.95405 5.02339 5.09328 5.11131 5.11853 5.16463 5.21202 5.28912 5.34110 5.42956 5.50674 5.60261 5.67008 5.76621 5.88964 6.07698 6.18464 6.32689 6.69233 7.00789 7.50504 8.98392 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.005309 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.762695 B = 5273.180457 C = 5639.820049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.092 4.092 7 C 0.111 3.889 8 H 0.046 0.954 9 C -0.128 4.128 10 C -0.139 4.139 11 C 0.209 3.791 12 C -0.124 4.124 13 C -0.559 4.559 14 H 0.052 0.948 15 C 0.033 3.967 16 N -0.890 5.890 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.275 1.275 21 O -0.377 6.377 22 C -0.109 4.109 23 C -0.126 4.126 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.257 0.743 39 H 0.105 0.895 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -15.157 4.441 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.092 4.092 7 C 0.053 3.947 8 H 0.064 0.936 9 C -0.166 4.166 10 C -0.177 4.177 11 C 0.171 3.829 12 C -0.181 4.181 13 C -0.597 4.597 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.528 5.528 17 Si 0.772 3.228 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.200 1.200 21 O -0.297 6.297 22 C -0.127 4.127 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.390 -15.184 4.208 15.937 hybrid contribution -0.354 1.520 0.313 1.592 sum 2.036 -13.664 4.521 14.536 Atomic orbital electron populations 1.21751 0.94571 1.02436 1.01612 1.20560 0.96199 0.90840 1.03925 1.20218 0.98631 0.97602 0.92588 1.21219 0.99743 0.94079 0.98694 1.21133 0.99919 0.95835 0.97025 1.19878 1.00340 0.94480 0.94472 1.21697 0.92739 0.88820 0.91466 0.93644 1.23000 0.95163 0.96924 1.01494 1.23000 0.98188 0.96090 1.00383 1.19741 0.85489 0.84728 0.92953 1.21676 1.01870 0.98054 0.96527 1.21798 1.03261 1.13630 1.21033 0.92975 1.25713 0.96940 0.98890 0.95342 1.70100 1.10827 1.40764 1.31061 0.85828 0.77531 0.80402 0.79086 1.19241 1.21076 1.20034 1.89011 1.51520 1.40959 1.48191 1.20993 0.99129 0.94981 0.97597 1.21212 1.00261 0.94069 0.98851 0.93072 0.93670 0.90592 0.90149 0.89499 0.83516 0.85257 0.91025 0.89519 0.91860 0.91192 0.95289 0.92201 0.93612 0.93385 0.87701 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.08 -1.37 6.06 29.85 0.18 -1.19 16 3 C -0.09 -2.28 5.13 -19.87 -0.10 -2.38 16 4 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 5 C -0.12 -3.80 9.70 22.27 0.22 -3.58 16 6 C -0.09 -3.46 5.06 -19.87 -0.10 -3.56 16 7 C 0.11 4.81 3.49 30.53 0.11 4.92 16 8 H 0.05 2.09 8.08 -2.39 -0.02 2.07 16 9 C -0.13 -4.74 6.57 31.90 0.21 -4.53 16 10 C -0.14 -5.78 6.26 31.59 0.20 -5.58 16 11 C 0.21 10.65 0.74 -11.17 -0.01 10.65 16 12 C -0.12 -6.19 8.45 71.98 0.61 -5.59 16 13 C -0.56 -31.29 8.19 25.60 0.21 -31.08 16 14 H 0.05 2.85 7.33 -2.91 -0.02 2.83 16 15 C 0.03 1.88 5.26 84.65 0.45 2.33 16 16 N -0.89 -53.08 10.93 21.45 0.23 -52.85 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 O -0.38 -19.96 9.29 -148.98 -1.38 -21.34 16 22 C -0.11 -3.99 9.38 22.27 0.21 -3.78 16 23 C -0.13 -3.70 9.70 22.27 0.22 -3.49 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.25 8.09 -2.38 -0.02 1.23 16 28 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.07 2.50 8.05 -2.39 -0.02 2.49 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.06 2.60 7.39 -2.39 -0.02 2.58 16 34 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 3.37 6.00 -2.38 -0.01 3.35 16 37 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.10 4.22 7.64 -2.91 -0.02 4.20 16 40 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.24 324.38 5.19 -60.06 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.99 Total: 19.25 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.32 Total: -51.54 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.23 Total: -52.85 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.38 Total: -21.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.24 5.19 -60.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.225 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds