Wall clock time and date at job start Mon Mar 30 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47291 * 2 1 4 4 C 1.38253 * 120.00055 * 265.21109 * 3 2 1 5 5 C 1.38209 * 120.00182 * 180.22821 * 4 3 2 6 6 C 1.38261 * 120.00125 * 359.81412 * 5 4 3 7 7 C 1.38208 * 119.99628 * 359.97286 * 6 5 4 8 8 C 1.38212 * 120.00114 * 84.99550 * 3 2 1 9 9 C 1.50701 * 119.99837 * 0.02562 * 8 3 2 10 10 H 1.08998 * 110.67458 * 321.75497 * 9 8 3 11 11 C 1.54991 * 110.62030 * 84.72570 * 9 8 3 12 12 C 1.54817 * 102.09285 * 155.52363 * 11 9 8 13 13 C 1.54096 * 104.18822 * 339.11830 * 12 11 9 14 14 C 1.52995 * 109.88300 * 117.54467 * 13 12 11 15 15 C 1.50698 * 109.87721 * 238.54829 * 13 12 11 16 16 H 1.07997 * 120.00340 * 359.97438 * 15 13 12 17 17 C 1.37884 * 120.00157 * 179.97438 * 15 13 12 18 18 N 1.31516 * 119.99703 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00157 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47015 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46906 * 120.00191 * 19 17 15 22 22 H 1.48502 * 109.46969 * 239.99908 * 19 17 15 23 23 O 1.43749 * 107.29556 * 357.96748 * 13 12 11 24 24 H 1.08998 * 109.46791 * 299.99992 * 1 2 3 25 25 H 1.08992 * 109.47013 * 59.99783 * 1 2 3 26 26 H 1.08994 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47530 * 240.00084 * 2 1 3 28 28 H 1.09005 * 109.47430 * 119.99743 * 2 1 3 29 29 H 1.08007 * 120.00239 * 0.06420 * 4 3 2 30 30 H 1.08002 * 120.00048 * 179.83535 * 5 4 3 31 31 H 1.07999 * 120.00058 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.00267 * 179.97438 * 7 6 5 33 33 H 1.08996 * 110.90945 * 37.32303 * 11 9 8 34 34 H 1.09004 * 110.90588 * 273.71569 * 11 9 8 35 35 H 1.09004 * 110.48829 * 97.79579 * 12 11 9 36 36 H 1.08996 * 110.48865 * 220.43897 * 12 11 9 37 37 H 1.09003 * 109.46762 * 59.99703 * 14 13 12 38 38 H 1.09001 * 109.47647 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.47094 * 300.00382 * 14 13 12 40 40 H 0.96996 * 119.99749 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3571 2.0392 -1.1931 5 6 2.8223 3.3407 -1.1928 6 6 2.9594 4.0255 0.0005 7 6 2.6306 3.4088 1.1928 8 6 2.1643 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 1 0.9238 0.8065 2.3707 11 6 3.0006 0.6009 3.0227 12 6 2.7100 0.5482 4.5425 13 6 1.7642 1.7398 4.7878 14 6 0.4134 1.2353 5.2990 15 6 2.3747 2.6795 5.7954 16 1 3.3407 2.4578 6.2245 17 6 1.7001 3.8223 6.1694 18 7 0.5240 4.0926 5.6464 19 14 2.4565 4.9868 7.4189 20 1 3.7750 4.4590 7.8526 21 1 2.6372 6.3254 6.8020 22 1 1.5582 5.1014 8.5959 23 8 1.5931 2.4154 3.5305 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.2497 1.5045 -2.1253 30 1 3.0785 3.8229 -2.1246 31 1 3.3233 5.0424 0.0008 32 1 2.7380 3.9435 2.1250 33 1 3.9459 1.1060 2.8248 34 1 2.9981 -0.4002 2.5914 35 1 2.2189 -0.3890 4.8047 36 1 3.6317 0.6691 5.1116 37 1 0.5581 0.6927 6.2332 38 1 -0.2499 2.0831 5.4706 39 1 -0.0304 0.5705 4.5578 40 1 0.0493 4.8963 5.9098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310435321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:52 Heat of formation + Delta-G solvation = -49.694389 kcal Electronic energy + Delta-G solvation = -20208.584489 eV Core-core repulsion = 17372.919340 eV Total energy + Delta-G solvation = -2835.665149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00566 -39.41815 -35.30172 -34.86662 -32.80309 -32.58345 -30.62489 -30.02628 -27.46852 -26.36743 -24.70917 -23.37269 -22.03094 -21.21976 -21.04727 -18.73867 -17.35803 -17.21045 -16.59691 -16.07023 -15.62455 -15.36890 -14.94779 -14.69808 -14.46998 -14.32265 -14.15705 -13.98043 -13.66341 -13.20424 -12.91626 -12.83686 -12.81734 -12.53097 -12.43322 -12.31252 -12.07649 -11.88490 -11.87789 -11.60225 -11.40204 -11.18912 -10.94401 -10.59791 -9.92525 -9.60340 -9.35270 -8.04195 -6.26784 0.49466 0.57373 1.38069 1.40341 1.51036 2.41810 2.88300 3.10048 3.59803 3.90400 3.96101 4.04002 4.10262 4.21510 4.28646 4.37050 4.43107 4.55742 4.62394 4.74167 4.75210 4.80095 4.83858 4.89744 5.01328 5.05559 5.09347 5.15520 5.20791 5.21778 5.24657 5.38826 5.41388 5.44970 5.65226 5.66562 5.73335 5.91381 6.13031 6.21342 6.35276 6.62661 7.09155 7.47587 8.96846 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.006734 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.639290 B = 4156.841345 C = 4785.942001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.137 4.137 7 C -0.119 4.119 8 C -0.087 4.087 9 C 0.100 3.900 10 H 0.064 0.936 11 C -0.128 4.128 12 C -0.138 4.138 13 C 0.210 3.790 14 C -0.141 4.141 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.032 3.968 18 N -0.889 5.889 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.276 1.276 23 O -0.373 6.373 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.026 0.974 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -7.322 -13.323 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.155 4.155 7 C -0.137 4.137 8 C -0.087 4.087 9 C 0.042 3.958 10 H 0.081 0.919 11 C -0.165 4.165 12 C -0.176 4.176 13 C 0.173 3.827 14 C -0.199 4.199 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.171 4.171 18 N -0.526 5.526 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.202 1.202 23 O -0.293 6.293 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.148 0.852 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.639 -6.983 -13.330 15.278 hybrid contribution 0.193 0.975 1.273 1.615 sum 2.832 -6.009 -12.057 13.765 Atomic orbital electron populations 1.21741 0.94677 1.02479 1.01397 1.20639 0.96294 0.91502 1.03813 1.19933 0.99276 0.97335 0.91874 1.21306 0.99587 0.95348 0.97643 1.21428 0.99361 0.95009 0.98080 1.21328 1.01176 1.00604 0.92435 1.21060 0.98927 0.95370 0.98343 1.19760 0.99937 0.94779 0.94192 1.21891 0.96151 0.90242 0.87517 0.91881 1.22991 0.97861 1.00433 0.95251 1.22997 1.00028 0.98774 0.95797 1.19746 0.91293 0.89257 0.82442 1.22038 1.00086 0.99575 0.98187 1.21486 1.04642 1.08297 1.23474 0.92650 1.25751 0.95027 0.99038 0.97244 1.70116 1.14009 1.25580 1.42892 0.85670 0.78939 0.78843 0.79126 1.19079 1.21073 1.20198 1.89208 1.91714 1.33255 1.15091 0.94913 0.92031 0.90495 0.88463 0.91221 0.82958 0.83143 0.85241 0.88794 0.92351 0.88702 0.90914 0.92143 0.94068 0.92283 0.95458 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.75 71.98 0.70 -2.63 16 2 C -0.09 -1.98 5.40 29.85 0.16 -1.81 16 3 C -0.08 -2.46 5.13 -19.87 -0.10 -2.56 16 4 C -0.12 -2.97 9.68 22.27 0.22 -2.75 16 5 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 6 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 7 C -0.12 -4.74 9.39 22.27 0.21 -4.53 16 8 C -0.09 -3.26 5.13 -19.86 -0.10 -3.36 16 9 C 0.10 4.13 2.70 30.53 0.08 4.21 16 10 H 0.06 2.53 5.87 -2.39 -0.01 2.51 16 11 C -0.13 -4.71 6.32 31.90 0.20 -4.51 16 12 C -0.14 -5.76 6.26 31.59 0.20 -5.56 16 13 C 0.21 10.76 0.74 -11.17 -0.01 10.75 16 14 C -0.14 -7.03 8.39 71.98 0.60 -6.43 16 15 C -0.54 -30.63 8.26 25.60 0.21 -30.42 16 16 H 0.06 3.09 7.33 -2.91 -0.02 3.07 16 17 C 0.03 1.80 5.26 84.66 0.45 2.24 16 18 N -0.89 -52.93 10.93 21.45 0.23 -52.69 16 19 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 O -0.37 -19.75 8.87 -148.98 -1.32 -21.08 16 24 H 0.03 0.93 6.78 -2.39 -0.02 0.91 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.67 8.05 -2.39 -0.02 1.65 16 28 H 0.07 1.67 5.81 -2.38 -0.01 1.66 16 29 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.09 4.47 7.27 -2.91 -0.02 4.45 16 33 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.09 2.78 7.02 -2.38 -0.02 2.77 16 35 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 36 H 0.06 2.54 7.40 -2.39 -0.02 2.52 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 3.32 6.00 -2.39 -0.01 3.31 16 39 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -66.46 315.47 5.21 -61.25 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.01 Total: 20.12 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 3.27 Total: -54.29 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.23 Total: -52.69 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.32 Total: -21.08 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.46 5.21 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.554 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds