Wall clock time and date at job start Mon Mar 30 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46590 * 2 1 4 4 C 1.38250 * 120.00406 * 268.71860 * 3 2 1 5 5 C 1.38209 * 120.00335 * 180.27814 * 4 3 2 6 6 C 1.38258 * 119.99842 * 359.74388 * 5 4 3 7 7 C 1.38219 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.38215 * 119.99544 * 88.49290 * 3 2 1 9 9 C 1.50696 * 120.00398 * 359.97438 * 8 3 2 10 10 H 1.08997 * 110.35555 * 30.98363 * 9 8 3 11 11 C 1.54954 * 110.30875 * 268.84176 * 9 8 3 12 12 C 1.55305 * 100.94139 * 204.63799 * 11 9 8 13 13 C 1.54381 * 102.25469 * 34.13167 * 12 11 9 14 14 C 1.53003 * 109.83002 * 98.24431 * 13 12 11 15 15 C 1.50701 * 109.83420 * 219.13189 * 13 12 11 16 16 H 1.07994 * 119.99887 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99944 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99679 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 120.00212 * 359.97438 * 17 15 13 20 20 H 1.48494 * 109.46995 * 90.00413 * 19 17 15 21 21 H 1.48495 * 109.47148 * 210.00636 * 19 17 15 22 22 H 1.48500 * 109.46995 * 330.00265 * 19 17 15 23 23 O 1.43240 * 107.59064 * 338.64427 * 13 12 11 24 24 H 1.09007 * 109.46507 * 186.67962 * 1 2 3 25 25 H 1.08995 * 109.47526 * 306.67144 * 1 2 3 26 26 H 1.08997 * 109.47448 * 66.67776 * 1 2 3 27 27 H 1.09002 * 109.47156 * 240.00712 * 2 1 3 28 28 H 1.08995 * 109.47608 * 119.99978 * 2 1 3 29 29 H 1.08003 * 120.00121 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00367 * 179.72907 * 5 4 3 31 31 H 1.07995 * 119.99952 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.99999 * 179.97438 * 7 6 5 33 33 H 1.08997 * 111.12466 * 86.71829 * 11 9 8 34 34 H 1.09000 * 111.12412 * 322.55727 * 11 9 8 35 35 H 1.09000 * 110.84991 * 275.94235 * 12 11 9 36 36 H 1.08998 * 110.84779 * 152.32458 * 12 11 9 37 37 H 1.09000 * 109.46715 * 60.00837 * 14 13 12 38 38 H 1.09004 * 109.46797 * 179.97438 * 14 13 12 39 39 H 1.08999 * 109.47370 * 300.00637 * 14 13 12 40 40 H 0.97000 * 119.99313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2878 2.0638 -1.1969 5 6 2.7539 3.3650 -1.1968 6 6 2.9594 4.0255 0.0003 7 6 2.6993 3.3844 1.1969 8 6 2.2328 2.0829 1.1966 9 6 1.9488 1.3841 2.5012 10 1 2.1309 0.3137 2.4055 11 6 0.4864 1.6434 2.9429 12 6 0.6015 1.4389 4.4782 13 6 2.0190 1.9738 4.7746 14 6 1.9341 3.4126 5.2880 15 6 2.6893 1.1021 5.8051 16 1 2.1665 0.2505 6.2144 17 6 3.9698 1.3926 6.2260 18 7 4.5545 0.6321 7.1257 19 14 4.8739 2.8662 5.5185 20 1 4.5952 4.0641 6.3506 21 1 6.3340 2.5955 5.5138 22 1 4.4113 3.1102 4.1287 23 8 2.7608 1.9362 3.5497 24 1 -0.3632 -1.0208 0.1195 25 1 -0.3634 0.6137 0.8242 26 1 -0.3634 0.4068 -0.9437 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.1272 1.5479 -2.1321 30 1 2.9577 3.8657 -2.1317 31 1 3.3240 5.0420 0.0004 32 1 2.8603 3.9002 2.1319 33 1 -0.1929 0.9153 2.4995 34 1 0.1785 2.6613 2.7042 35 1 0.5238 0.3827 4.7358 36 1 -0.1520 2.0243 5.0050 37 1 1.3413 3.4376 6.2024 38 1 2.9376 3.7841 5.4957 39 1 1.4628 4.0409 4.5322 40 1 5.4554 0.8363 7.4216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310435323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:55 Heat of formation + Delta-G solvation = -23.059794 kcal Electronic energy + Delta-G solvation = -20363.777619 eV Core-core repulsion = 17529.267433 eV Total energy + Delta-G solvation = -2834.510186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83743 -38.13630 -34.20316 -33.06845 -31.46927 -31.26946 -29.60783 -29.13389 -25.46848 -24.78545 -23.72174 -22.17574 -21.20127 -19.83630 -19.37810 -16.58794 -16.48090 -16.24256 -15.09075 -14.92351 -14.33173 -13.83010 -13.74808 -13.48476 -13.46400 -12.86991 -12.62087 -12.44719 -12.21164 -12.15453 -11.97023 -11.66787 -11.45744 -11.40678 -11.01819 -10.85482 -10.62228 -10.34349 -10.30760 -9.95304 -9.89822 -9.58577 -8.95413 -8.54047 -8.52649 -8.39875 -8.06676 -6.07585 -4.15105 1.58159 1.66266 3.37860 3.48902 3.70440 3.98494 4.54768 4.71086 4.90835 5.00661 5.17858 5.24846 5.26860 5.38131 5.40553 5.47207 5.55617 5.63591 5.69323 5.74759 5.92954 5.98001 6.07745 6.14702 6.16961 6.19704 6.27400 6.37769 6.40747 6.45982 6.51712 6.61282 6.70900 6.72349 6.81930 6.82377 7.04785 7.27391 7.32408 7.71589 8.29320 8.50783 8.93149 9.58346 11.03367 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.007517 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.416847 B = 3723.937112 C = 4256.184029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.079 4.079 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.070 4.070 9 C 0.113 3.887 10 H 0.072 0.928 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.192 3.808 14 C -0.147 4.147 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.084 3.916 18 N -0.895 5.895 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.224 1.224 23 O -0.365 6.365 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 3.428 -15.024 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.111 4.111 8 C -0.070 4.070 9 C 0.055 3.945 10 H 0.090 0.910 11 C -0.185 4.185 12 C -0.166 4.166 13 C 0.154 3.846 14 C -0.204 4.204 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.120 4.120 18 N -0.532 5.532 19 Si 0.711 3.289 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.147 1.147 23 O -0.286 6.286 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.102 3.458 -14.939 16.899 hybrid contribution 0.529 0.721 -0.182 0.913 sum -6.573 4.179 -15.121 17.009 Atomic orbital electron populations 1.21883 0.94888 1.01810 1.02254 1.20592 0.96165 0.92966 1.02987 1.19662 0.99702 0.96069 0.92458 1.20877 1.01171 0.95121 0.97020 1.21017 1.00781 0.95109 0.97685 1.21120 1.01295 0.99841 0.92632 1.21123 0.97153 0.94552 0.98257 1.19948 0.98400 0.94404 0.94239 1.21640 0.90299 0.96356 0.86222 0.91026 1.23331 0.96440 1.01488 0.97240 1.23038 0.98233 1.01926 0.93406 1.20070 0.88415 0.92499 0.83591 1.22299 1.00654 0.97578 0.99889 1.21147 1.00593 1.13582 1.20699 0.90606 1.25023 0.97112 0.96494 0.93345 1.69930 1.14304 1.38714 1.30248 0.87006 0.77404 0.81934 0.82508 1.21715 1.23180 1.14727 1.88817 1.38376 1.83239 1.18179 0.92516 0.91702 0.92955 0.91414 0.90293 0.86606 0.86708 0.86580 0.85399 0.90895 0.91460 0.90904 0.91686 0.92119 0.93586 0.94819 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.90 37.16 0.37 -1.30 16 2 C -0.09 -1.13 5.63 -27.88 -0.16 -1.29 16 3 C -0.08 -1.16 5.13 -104.62 -0.54 -1.70 16 4 C -0.12 -1.63 9.70 -39.59 -0.38 -2.02 16 5 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 6 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 7 C -0.09 -1.59 9.37 -39.58 -0.37 -1.96 16 8 C -0.07 -1.20 5.08 -104.62 -0.53 -1.73 16 9 C 0.11 2.14 3.22 -26.85 -0.09 2.05 16 10 H 0.07 1.37 6.07 -51.93 -0.32 1.06 16 11 C -0.15 -2.45 6.09 -24.48 -0.15 -2.60 16 12 C -0.13 -2.47 6.07 -24.79 -0.15 -2.62 16 13 C 0.19 4.45 0.78 -91.05 -0.07 4.38 16 14 C -0.15 -3.19 8.22 37.16 0.31 -2.89 16 15 C -0.52 -14.66 8.83 -34.44 -0.30 -14.96 16 16 H 0.08 2.28 7.76 -52.49 -0.41 1.87 16 17 C 0.08 2.46 5.45 -17.82 -0.10 2.36 16 18 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 22.73 23.91 -169.99 -4.07 18.67 16 20 H -0.29 -7.27 6.87 56.52 0.39 -6.88 16 21 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 22 H -0.22 -5.59 5.38 56.52 0.30 -5.29 16 23 O -0.37 -8.49 6.36 -35.23 -0.22 -8.71 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.06 0.77 5.22 -51.93 -0.27 0.50 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.08 1.08 6.04 -51.93 -0.31 0.76 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 2.36 7.43 -52.49 -0.39 1.97 16 33 H 0.07 1.04 5.87 -51.93 -0.30 0.73 16 34 H 0.07 1.08 8.05 -51.93 -0.42 0.67 16 35 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 36 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.07 3.18 -51.93 -0.17 0.90 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -31.06 305.36 -7.89 -38.95 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.01 Total: 2.01 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -2.96 Total: -28.63 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.22 Total: -8.71 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.07 Total: 18.67 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.06 -7.89 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.891 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds