Wall clock time and date at job start Mon Mar 30 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46590 * 2 1 4 4 C 1.38250 * 120.00406 * 268.71860 * 3 2 1 5 5 C 1.38209 * 120.00335 * 180.27814 * 4 3 2 6 6 C 1.38258 * 119.99842 * 359.74388 * 5 4 3 7 7 C 1.38219 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.38215 * 119.99544 * 88.49290 * 3 2 1 9 9 C 1.50696 * 120.00398 * 359.97438 * 8 3 2 10 10 H 1.08997 * 110.35555 * 30.98363 * 9 8 3 11 11 C 1.54954 * 110.30875 * 268.84176 * 9 8 3 12 12 C 1.55305 * 100.94139 * 204.63799 * 11 9 8 13 13 C 1.54381 * 102.25469 * 34.13167 * 12 11 9 14 14 C 1.53003 * 109.83002 * 98.24431 * 13 12 11 15 15 C 1.50701 * 109.83420 * 219.13189 * 13 12 11 16 16 H 1.07994 * 119.99887 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99944 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99679 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 120.00212 * 359.97438 * 17 15 13 20 20 H 1.48494 * 109.46995 * 90.00413 * 19 17 15 21 21 H 1.48495 * 109.47148 * 210.00636 * 19 17 15 22 22 H 1.48500 * 109.46995 * 330.00265 * 19 17 15 23 23 O 1.43240 * 107.59064 * 338.64427 * 13 12 11 24 24 H 1.09007 * 109.46507 * 186.67962 * 1 2 3 25 25 H 1.08995 * 109.47526 * 306.67144 * 1 2 3 26 26 H 1.08997 * 109.47448 * 66.67776 * 1 2 3 27 27 H 1.09002 * 109.47156 * 240.00712 * 2 1 3 28 28 H 1.08995 * 109.47608 * 119.99978 * 2 1 3 29 29 H 1.08003 * 120.00121 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00367 * 179.72907 * 5 4 3 31 31 H 1.07995 * 119.99952 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.99999 * 179.97438 * 7 6 5 33 33 H 1.08997 * 111.12466 * 86.71829 * 11 9 8 34 34 H 1.09000 * 111.12412 * 322.55727 * 11 9 8 35 35 H 1.09000 * 110.84991 * 275.94235 * 12 11 9 36 36 H 1.08998 * 110.84779 * 152.32458 * 12 11 9 37 37 H 1.09000 * 109.46715 * 60.00837 * 14 13 12 38 38 H 1.09004 * 109.46797 * 179.97438 * 14 13 12 39 39 H 1.08999 * 109.47370 * 300.00637 * 14 13 12 40 40 H 0.97000 * 119.99313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2878 2.0638 -1.1969 5 6 2.7539 3.3650 -1.1968 6 6 2.9594 4.0255 0.0003 7 6 2.6993 3.3844 1.1969 8 6 2.2328 2.0829 1.1966 9 6 1.9488 1.3841 2.5012 10 1 2.1309 0.3137 2.4055 11 6 0.4864 1.6434 2.9429 12 6 0.6015 1.4389 4.4782 13 6 2.0190 1.9738 4.7746 14 6 1.9341 3.4126 5.2880 15 6 2.6893 1.1021 5.8051 16 1 2.1665 0.2505 6.2144 17 6 3.9698 1.3926 6.2260 18 7 4.5545 0.6321 7.1257 19 14 4.8739 2.8662 5.5185 20 1 4.5952 4.0641 6.3506 21 1 6.3340 2.5955 5.5138 22 1 4.4113 3.1102 4.1287 23 8 2.7608 1.9362 3.5497 24 1 -0.3632 -1.0208 0.1195 25 1 -0.3634 0.6137 0.8242 26 1 -0.3634 0.4068 -0.9437 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.1272 1.5479 -2.1321 30 1 2.9577 3.8657 -2.1317 31 1 3.3240 5.0420 0.0004 32 1 2.8603 3.9002 2.1319 33 1 -0.1929 0.9153 2.4995 34 1 0.1785 2.6613 2.7042 35 1 0.5238 0.3827 4.7358 36 1 -0.1520 2.0243 5.0050 37 1 1.3413 3.4376 6.2024 38 1 2.9376 3.7841 5.4957 39 1 1.4628 4.0409 4.5322 40 1 5.4554 0.8363 7.4216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310435323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:54 Heat of formation + Delta-G solvation = -40.738038 kcal Electronic energy + Delta-G solvation = -20364.544205 eV Core-core repulsion = 17529.267433 eV Total energy + Delta-G solvation = -2835.276773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16645 -39.56846 -35.34752 -34.89377 -33.22297 -32.79820 -30.99758 -30.20145 -27.29696 -26.48949 -24.70366 -23.57414 -22.40853 -21.17292 -21.01987 -18.66709 -17.79294 -17.59757 -16.73139 -16.21199 -15.79528 -15.27896 -15.04040 -14.74366 -14.71925 -14.40119 -14.16054 -14.11502 -13.78327 -13.56895 -13.28197 -12.95834 -12.85367 -12.61761 -12.48100 -12.34284 -12.09537 -11.91058 -11.73900 -11.57066 -11.41830 -11.22558 -10.81895 -10.72912 -10.05590 -9.60446 -9.40100 -8.34363 -6.43795 0.48072 0.55041 1.29238 1.38358 1.64380 2.39200 2.82826 2.99140 3.41737 3.78805 3.88883 3.95100 4.02462 4.18134 4.27546 4.34481 4.36904 4.49369 4.53631 4.56042 4.63923 4.72374 4.78186 4.81233 4.85477 4.94675 5.02579 5.10471 5.13206 5.17055 5.20892 5.27404 5.29355 5.49077 5.58115 5.64611 5.65816 5.69796 5.88022 6.18053 6.21015 6.56034 6.78670 7.33932 8.80401 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.007517 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.416847 B = 3723.937112 C = 4256.184029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.093 4.093 9 C 0.107 3.893 10 H 0.060 0.940 11 C -0.129 4.129 12 C -0.127 4.127 13 C 0.185 3.815 14 C -0.146 4.146 15 C -0.524 4.524 16 H 0.039 0.961 17 C 0.030 3.970 18 N -0.943 5.943 19 Si 0.939 3.061 20 H -0.277 1.277 21 H -0.314 1.314 22 H -0.213 1.213 23 O -0.389 6.389 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 4.818 -18.447 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.084 4.084 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.153 4.153 7 C -0.136 4.136 8 C -0.093 4.093 9 C 0.049 3.951 10 H 0.078 0.922 11 C -0.167 4.167 12 C -0.165 4.165 13 C 0.147 3.853 14 C -0.203 4.203 15 C -0.561 4.561 16 H 0.057 0.943 17 C -0.169 4.169 18 N -0.583 5.583 19 Si 0.768 3.232 20 H -0.205 1.205 21 H -0.243 1.243 22 H -0.136 1.136 23 O -0.310 6.310 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.427 4.854 -18.373 20.788 hybrid contribution 0.888 0.199 0.800 1.212 sum -7.539 5.053 -17.573 19.778 Atomic orbital electron populations 1.21856 0.93544 1.02516 1.02553 1.20639 0.97311 0.91816 1.03027 1.19902 0.99383 0.96888 0.92195 1.21267 0.99835 0.95317 0.97528 1.21432 0.99004 0.95038 0.98412 1.21361 1.00911 1.00793 0.92244 1.21087 0.99021 0.94923 0.98575 1.19842 1.00647 0.94783 0.94004 1.21779 0.91135 0.95870 0.86297 0.92210 1.23259 0.95626 1.02930 0.94842 1.22978 0.96419 1.01245 0.95864 1.20028 0.89857 0.92701 0.82693 1.22237 1.00120 0.96805 1.01090 1.21534 1.00350 1.12839 1.21407 0.94276 1.25797 0.98216 0.99088 0.93800 1.70062 1.14854 1.40951 1.32482 0.86097 0.75344 0.79269 0.82507 1.20461 1.24289 1.13645 1.88705 1.39942 1.83505 1.18843 0.91317 0.92726 0.91573 0.89456 0.92183 0.83537 0.83353 0.84696 0.87595 0.88265 0.90334 0.92267 0.89605 0.91442 0.95188 0.91825 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.90 71.98 0.71 -2.10 16 2 C -0.09 -2.07 5.63 29.85 0.17 -1.90 16 3 C -0.08 -2.25 5.13 -19.87 -0.10 -2.35 16 4 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 5 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 6 C -0.14 -3.53 10.05 22.27 0.22 -3.31 16 7 C -0.12 -3.89 9.37 22.27 0.21 -3.68 16 8 C -0.09 -3.06 5.08 -19.87 -0.10 -3.16 16 9 C 0.11 3.98 3.22 30.51 0.10 4.08 16 10 H 0.06 2.33 6.07 -2.39 -0.01 2.32 16 11 C -0.13 -4.08 6.09 32.05 0.20 -3.89 16 12 C -0.13 -4.82 6.07 31.85 0.19 -4.62 16 13 C 0.19 8.60 0.78 -11.07 -0.01 8.59 16 14 C -0.15 -6.15 8.22 71.98 0.59 -5.56 16 15 C -0.52 -30.38 8.83 25.60 0.23 -30.15 16 16 H 0.04 2.48 7.76 -2.91 -0.02 2.46 16 17 C 0.03 1.79 5.45 84.65 0.46 2.25 16 18 N -0.94 -60.81 13.96 21.45 0.30 -60.51 16 19 Si 0.94 48.28 23.91 68.60 1.64 49.92 16 20 H -0.28 -13.56 6.87 99.48 0.68 -12.87 16 21 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 22 H -0.21 -10.53 5.38 99.48 0.54 -10.00 16 23 O -0.39 -18.10 6.36 -148.98 -0.95 -19.04 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.05 1.14 5.22 -2.39 -0.01 1.13 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 28 H 0.06 1.59 6.04 -2.39 -0.01 1.57 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.11 3.87 7.43 -2.91 -0.02 3.85 16 33 H 0.10 2.60 5.87 -2.39 -0.01 2.59 16 34 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 35 H 0.06 2.36 7.65 -2.39 -0.02 2.35 16 36 H 0.09 2.85 7.82 -2.39 -0.02 2.84 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.03 1.35 3.18 -2.38 -0.01 1.34 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -69.88 305.36 5.12 -64.76 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.82 Total: 15.58 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 3.31 Total: -50.70 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.30 Total: -60.51 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.95 Total: -19.04 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.64 Total: 49.92 kcal Total: -69.88 5.12 -64.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds