Wall clock time and date at job start Mon Mar 30 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46697 * 2 1 4 4 C 1.38255 * 120.00266 * 264.99646 * 3 2 1 5 5 C 1.38212 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99650 * 0.28729 * 5 4 3 7 7 C 1.38208 * 120.00078 * 359.52112 * 6 5 4 8 8 C 1.38215 * 119.99989 * 85.02768 * 3 2 1 9 9 C 1.50706 * 119.99787 * 359.97438 * 8 3 2 10 10 H 1.08992 * 110.27753 * 325.64068 * 9 8 3 11 11 C 1.54943 * 110.30494 * 87.84197 * 9 8 3 12 12 C 1.55303 * 100.94230 * 155.35778 * 11 9 8 13 13 C 1.54378 * 102.25130 * 325.86564 * 12 11 9 14 14 C 1.53005 * 109.90396 * 261.79909 * 13 12 11 15 15 C 1.50703 * 109.82994 * 140.87276 * 13 12 11 16 16 H 1.07994 * 120.00262 * 0.40637 * 15 13 12 17 17 C 1.37885 * 119.99729 * 180.41211 * 15 13 12 18 18 N 1.31512 * 120.00047 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99826 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47133 * 90.00141 * 19 17 15 21 21 H 1.48502 * 109.47129 * 209.99902 * 19 17 15 22 22 H 1.48501 * 109.46953 * 329.99945 * 19 17 15 23 23 O 1.43227 * 107.59111 * 21.35452 * 13 12 11 24 24 H 1.09000 * 109.47454 * 299.99838 * 1 2 3 25 25 H 1.08997 * 109.47321 * 59.99926 * 1 2 3 26 26 H 1.09005 * 109.47428 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47007 * 240.00346 * 2 1 3 28 28 H 1.08997 * 109.47321 * 120.00074 * 2 1 3 29 29 H 1.07999 * 119.99759 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.99812 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.99616 * 179.72197 * 6 5 4 32 32 H 1.07998 * 119.99908 * 180.21048 * 7 6 5 33 33 H 1.09005 * 111.12235 * 273.27462 * 11 9 8 34 34 H 1.09003 * 111.13283 * 37.43796 * 11 9 8 35 35 H 1.09003 * 110.85005 * 207.66981 * 12 11 9 36 36 H 1.09004 * 111.02131 * 84.13256 * 12 11 9 37 37 H 1.09004 * 109.47156 * 179.63540 * 14 13 12 38 38 H 1.09000 * 109.46979 * 299.63012 * 14 13 12 39 39 H 1.08999 * 109.47123 * 59.63391 * 14 13 12 40 40 H 0.96994 * 119.99944 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3611 2.0379 -1.1927 5 6 2.8212 3.3411 -1.1928 6 6 2.9582 4.0259 0.0005 7 6 2.6257 3.4104 1.1925 8 6 2.1647 2.1070 1.1925 9 6 1.8064 1.4344 2.4926 10 1 0.9654 0.7563 2.3479 11 6 3.0287 0.6663 3.0554 12 6 2.6853 0.6348 4.5697 13 6 1.9666 1.9861 4.7709 14 6 2.9459 3.0183 5.3335 15 6 0.8072 1.8125 5.7178 16 1 0.5991 0.8426 6.1446 17 6 0.0119 2.8921 6.0392 18 7 0.2655 4.0734 5.5197 19 14 -1.4256 2.6768 7.2124 20 1 -0.9682 2.9154 8.6049 21 1 -2.4946 3.6488 6.8692 22 1 -1.9570 1.2950 7.0958 23 8 1.4886 2.4169 3.4912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.2576 1.5017 -2.1245 30 1 3.0777 3.8232 -2.1246 31 1 3.3220 5.0428 0.0009 32 1 2.7296 3.9465 2.1243 33 1 3.0828 -0.3416 2.6438 34 1 3.9540 1.2130 2.8738 35 1 3.5923 0.5842 5.1722 36 1 2.0202 -0.1968 4.8026 37 1 2.4331 3.9709 5.4666 38 1 3.3255 2.6726 6.2950 39 1 3.7767 3.1468 4.6397 40 1 -0.2941 4.8327 5.7455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310435325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:58 Heat of formation + Delta-G solvation = -35.104210 kcal Electronic energy + Delta-G solvation = -20222.959003 eV Core-core repulsion = 17387.926532 eV Total energy + Delta-G solvation = -2835.032471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60652 -37.81887 -34.04119 -33.04312 -31.13574 -30.95912 -29.27942 -28.61024 -25.30724 -24.68461 -23.54649 -22.00757 -20.74010 -19.82297 -19.29908 -16.43403 -16.22155 -15.86170 -14.89906 -14.62513 -14.22157 -13.76298 -13.47456 -13.30274 -13.22508 -12.84889 -12.54594 -12.14087 -11.89419 -11.73153 -11.66655 -11.20984 -11.12062 -10.97054 -10.88771 -10.74261 -10.58564 -10.43622 -10.27284 -10.04850 -9.92266 -9.50804 -9.07026 -8.46250 -8.37283 -8.21855 -7.76005 -5.92083 -4.08377 1.72909 1.82944 3.31366 3.38874 3.41434 4.14186 4.44553 4.90178 5.06734 5.14794 5.32896 5.39254 5.44686 5.51248 5.57302 5.58818 5.70207 5.81574 5.83865 5.97344 6.05295 6.15324 6.25828 6.33311 6.34578 6.42521 6.50048 6.56234 6.60695 6.71006 6.83087 6.87715 6.93582 7.01171 7.11803 7.20327 7.43939 7.46587 7.81597 8.12112 8.39717 8.66657 9.07988 9.62920 11.09688 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.006437 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.115040 B = 4348.551671 C = 4534.452885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.131 4.131 7 C -0.087 4.087 8 C -0.067 4.067 9 C 0.112 3.888 10 H 0.066 0.934 11 C -0.145 4.145 12 C -0.141 4.141 13 C 0.228 3.772 14 C -0.139 4.139 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.082 3.918 18 N -0.859 5.859 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.344 6.344 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.011 0.989 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -4.725 -10.619 12.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.067 4.067 9 C 0.053 3.947 10 H 0.083 0.917 11 C -0.183 4.183 12 C -0.179 4.179 13 C 0.191 3.809 14 C -0.196 4.196 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.124 4.124 18 N -0.496 5.496 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 O -0.263 6.263 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.556 -4.336 -10.648 12.367 hybrid contribution -0.708 -0.183 0.603 0.948 sum 3.848 -4.519 -10.045 11.667 Atomic orbital electron populations 1.21770 0.94806 1.01428 1.02615 1.20546 0.96307 0.92995 1.02412 1.19653 0.99821 0.96207 0.92577 1.20845 1.01453 0.95300 0.96909 1.20999 1.01239 0.94936 0.97669 1.21133 1.01320 0.99734 0.92720 1.21189 0.96280 0.94522 0.98544 1.20010 0.97779 0.94659 0.94270 1.21590 0.95063 0.90698 0.87321 0.91673 1.23209 0.98400 0.99532 0.97141 1.23229 0.99975 1.00929 0.93740 1.19638 0.91625 0.87688 0.81932 1.21981 0.96582 1.03830 0.97248 1.21277 1.13966 0.95281 1.26694 0.92428 1.24988 0.97025 0.95258 0.95081 1.69945 1.37965 0.99719 1.41946 0.86715 0.82642 0.78039 0.81226 1.20661 1.21184 1.19924 1.88762 1.79445 1.41641 1.16485 0.91722 0.92866 0.92678 0.91636 0.90800 0.86805 0.86871 0.86622 0.84831 0.91875 0.91564 0.92158 0.91704 0.89189 0.94600 0.96989 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.72 37.16 0.36 -1.62 16 2 C -0.09 -1.15 5.38 -27.88 -0.15 -1.30 16 3 C -0.08 -1.31 5.13 -104.62 -0.54 -1.84 16 4 C -0.13 -1.81 9.68 -39.58 -0.38 -2.19 16 5 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 6 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 7 C -0.09 -1.64 9.37 -39.59 -0.37 -2.01 16 8 C -0.07 -1.25 5.09 -104.62 -0.53 -1.78 16 9 C 0.11 2.29 2.88 -26.85 -0.08 2.21 16 10 H 0.07 1.34 5.67 -51.93 -0.29 1.04 16 11 C -0.15 -2.66 6.35 -24.48 -0.16 -2.82 16 12 C -0.14 -2.92 6.08 -24.79 -0.15 -3.07 16 13 C 0.23 5.66 0.82 -91.05 -0.07 5.59 16 14 C -0.14 -3.36 8.51 37.16 0.32 -3.05 16 15 C -0.53 -14.64 8.22 -34.44 -0.28 -14.93 16 16 H 0.06 1.56 7.52 -52.49 -0.39 1.16 16 17 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 18 N -0.86 -24.63 10.92 55.43 0.61 -24.02 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 O -0.34 -8.69 8.71 -35.23 -0.31 -9.00 16 24 H 0.06 1.01 6.84 -51.93 -0.35 0.65 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 28 H 0.07 1.01 6.05 -51.93 -0.31 0.70 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.13 2.77 7.35 -52.49 -0.39 2.38 16 33 H 0.06 0.99 7.29 -51.93 -0.38 0.61 16 34 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.06 1.16 7.83 -51.93 -0.41 0.75 16 36 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 37 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -29.33 316.48 -9.05 -38.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.17 Total: 2.99 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -2.93 Total: -29.33 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.61 Total: -24.02 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.31 Total: -9.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.33 -9.05 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.272 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds