Wall clock time and date at job start Mon Mar 30 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46697 * 2 1 4 4 C 1.38255 * 120.00266 * 264.99646 * 3 2 1 5 5 C 1.38212 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99650 * 0.28729 * 5 4 3 7 7 C 1.38208 * 120.00078 * 359.52112 * 6 5 4 8 8 C 1.38215 * 119.99989 * 85.02768 * 3 2 1 9 9 C 1.50706 * 119.99787 * 359.97438 * 8 3 2 10 10 H 1.08992 * 110.27753 * 325.64068 * 9 8 3 11 11 C 1.54943 * 110.30494 * 87.84197 * 9 8 3 12 12 C 1.55303 * 100.94230 * 155.35778 * 11 9 8 13 13 C 1.54378 * 102.25130 * 325.86564 * 12 11 9 14 14 C 1.53005 * 109.90396 * 261.79909 * 13 12 11 15 15 C 1.50703 * 109.82994 * 140.87276 * 13 12 11 16 16 H 1.07994 * 120.00262 * 0.40637 * 15 13 12 17 17 C 1.37885 * 119.99729 * 180.41211 * 15 13 12 18 18 N 1.31512 * 120.00047 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99826 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47133 * 90.00141 * 19 17 15 21 21 H 1.48502 * 109.47129 * 209.99902 * 19 17 15 22 22 H 1.48501 * 109.46953 * 329.99945 * 19 17 15 23 23 O 1.43227 * 107.59111 * 21.35452 * 13 12 11 24 24 H 1.09000 * 109.47454 * 299.99838 * 1 2 3 25 25 H 1.08997 * 109.47321 * 59.99926 * 1 2 3 26 26 H 1.09005 * 109.47428 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47007 * 240.00346 * 2 1 3 28 28 H 1.08997 * 109.47321 * 120.00074 * 2 1 3 29 29 H 1.07999 * 119.99759 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.99812 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.99616 * 179.72197 * 6 5 4 32 32 H 1.07998 * 119.99908 * 180.21048 * 7 6 5 33 33 H 1.09005 * 111.12235 * 273.27462 * 11 9 8 34 34 H 1.09003 * 111.13283 * 37.43796 * 11 9 8 35 35 H 1.09003 * 110.85005 * 207.66981 * 12 11 9 36 36 H 1.09004 * 111.02131 * 84.13256 * 12 11 9 37 37 H 1.09004 * 109.47156 * 179.63540 * 14 13 12 38 38 H 1.09000 * 109.46979 * 299.63012 * 14 13 12 39 39 H 1.08999 * 109.47123 * 59.63391 * 14 13 12 40 40 H 0.96994 * 119.99944 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3611 2.0379 -1.1927 5 6 2.8212 3.3411 -1.1928 6 6 2.9582 4.0259 0.0005 7 6 2.6257 3.4104 1.1925 8 6 2.1647 2.1070 1.1925 9 6 1.8064 1.4344 2.4926 10 1 0.9654 0.7563 2.3479 11 6 3.0287 0.6663 3.0554 12 6 2.6853 0.6348 4.5697 13 6 1.9666 1.9861 4.7709 14 6 2.9459 3.0183 5.3335 15 6 0.8072 1.8125 5.7178 16 1 0.5991 0.8426 6.1446 17 6 0.0119 2.8921 6.0392 18 7 0.2655 4.0734 5.5197 19 14 -1.4256 2.6768 7.2124 20 1 -0.9682 2.9154 8.6049 21 1 -2.4946 3.6488 6.8692 22 1 -1.9570 1.2950 7.0958 23 8 1.4886 2.4169 3.4912 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.2576 1.5017 -2.1245 30 1 3.0777 3.8232 -2.1246 31 1 3.3220 5.0428 0.0009 32 1 2.7296 3.9465 2.1243 33 1 3.0828 -0.3416 2.6438 34 1 3.9540 1.2130 2.8738 35 1 3.5923 0.5842 5.1722 36 1 2.0202 -0.1968 4.8026 37 1 2.4331 3.9709 5.4666 38 1 3.3255 2.6726 6.2950 39 1 3.7767 3.1468 4.6397 40 1 -0.2941 4.8327 5.7455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310435325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:57 Heat of formation + Delta-G solvation = -49.739443 kcal Electronic energy + Delta-G solvation = -20223.593635 eV Core-core repulsion = 17387.926532 eV Total energy + Delta-G solvation = -2835.667103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00954 -39.38415 -35.30581 -34.85232 -32.83378 -32.58377 -30.66541 -30.02053 -27.33964 -26.31627 -24.69056 -23.48492 -22.07293 -21.18800 -21.09580 -18.43375 -17.54636 -17.31239 -16.59751 -16.12193 -15.69016 -15.42664 -14.82654 -14.67169 -14.46462 -14.17114 -14.05291 -13.88325 -13.63744 -13.09981 -12.94451 -12.85594 -12.77998 -12.65087 -12.46249 -12.34251 -12.20075 -12.03822 -11.79436 -11.58910 -11.38960 -11.23963 -10.92556 -10.55279 -9.84040 -9.58200 -9.32056 -8.01049 -6.24576 0.50633 0.58436 1.39671 1.40993 1.50322 2.43194 2.88454 3.13644 3.59242 3.88626 3.94859 3.99616 4.08175 4.23102 4.30653 4.36984 4.48764 4.54553 4.64450 4.67715 4.74290 4.79677 4.87590 4.91903 4.97023 5.07808 5.09550 5.14845 5.17296 5.22027 5.29129 5.33559 5.43971 5.50799 5.66380 5.69108 5.74280 5.93660 6.11720 6.22377 6.35496 6.68868 7.16451 7.51642 8.99141 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.006437 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.115040 B = 4348.551671 C = 4534.452885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.091 4.091 9 C 0.107 3.893 10 H 0.058 0.942 11 C -0.130 4.130 12 C -0.137 4.137 13 C 0.214 3.786 14 C -0.130 4.130 15 C -0.553 4.553 16 H 0.054 0.946 17 C 0.032 3.968 18 N -0.889 5.889 19 Si 0.947 3.053 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.269 1.269 23 O -0.378 6.378 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.024 0.976 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -6.320 -12.891 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.154 4.154 7 C -0.135 4.135 8 C -0.091 4.091 9 C 0.049 3.951 10 H 0.076 0.924 11 C -0.167 4.167 12 C -0.175 4.175 13 C 0.176 3.824 14 C -0.188 4.188 15 C -0.591 4.591 16 H 0.072 0.928 17 C -0.170 4.170 18 N -0.526 5.526 19 Si 0.773 3.227 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.194 1.194 23 O -0.298 6.298 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.989 -5.944 -12.915 15.067 hybrid contribution -0.829 0.323 1.223 1.512 sum 4.159 -5.622 -11.693 13.624 Atomic orbital electron populations 1.21742 0.94921 1.02379 1.01302 1.20609 0.96099 0.91711 1.03703 1.19934 0.99309 0.97312 0.92042 1.21296 0.99666 0.95421 0.97575 1.21427 0.99464 0.94924 0.98186 1.21338 1.01072 1.00632 0.92395 1.21046 0.98931 0.95118 0.98442 1.19949 0.99704 0.94977 0.94470 1.21716 0.95670 0.90202 0.87500 0.92409 1.23132 0.97425 1.00972 0.95212 1.23132 1.00050 0.98489 0.95795 1.19721 0.91250 0.89685 0.81721 1.21849 0.96723 1.02363 0.97858 1.21679 1.14969 0.95092 1.27343 0.92759 1.25733 0.99528 0.95043 0.96686 1.70109 1.38889 1.00290 1.43323 0.85754 0.79535 0.77924 0.79518 1.19733 1.21287 1.19406 1.88689 1.80120 1.43523 1.17445 0.95094 0.92050 0.90626 0.88464 0.91328 0.83152 0.83198 0.85042 0.88490 0.88695 0.91457 0.90743 0.91811 0.92323 0.94028 0.95710 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.72 71.98 0.70 -2.91 16 2 C -0.08 -2.03 5.38 29.85 0.16 -1.87 16 3 C -0.09 -2.54 5.13 -19.87 -0.10 -2.64 16 4 C -0.12 -3.00 9.68 22.27 0.22 -2.79 16 5 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 6 C -0.14 -4.17 10.05 22.27 0.22 -3.95 16 7 C -0.12 -4.52 9.37 22.27 0.21 -4.32 16 8 C -0.09 -3.39 5.09 -19.86 -0.10 -3.49 16 9 C 0.11 4.47 2.88 30.51 0.09 4.56 16 10 H 0.06 2.44 5.67 -2.39 -0.01 2.43 16 11 C -0.13 -4.68 6.35 32.05 0.20 -4.47 16 12 C -0.14 -5.64 6.08 31.85 0.19 -5.45 16 13 C 0.21 10.90 0.82 -11.07 -0.01 10.89 16 14 C -0.13 -6.54 8.51 71.98 0.61 -5.93 16 15 C -0.55 -31.09 8.22 25.60 0.21 -30.88 16 16 H 0.05 2.99 7.52 -2.91 -0.02 2.96 16 17 C 0.03 1.83 5.26 84.66 0.45 2.28 16 18 N -0.89 -53.05 10.92 21.45 0.23 -52.82 16 19 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 O -0.38 -19.95 8.71 -148.98 -1.30 -21.25 16 24 H 0.03 0.95 6.84 -2.39 -0.02 0.94 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.10 1.75 8.05 -2.39 -0.02 1.73 16 28 H 0.07 1.72 6.05 -2.39 -0.01 1.71 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.10 4.36 7.35 -2.91 -0.02 4.34 16 33 H 0.09 2.78 7.29 -2.38 -0.02 2.76 16 34 H 0.07 2.40 8.05 -2.39 -0.02 2.38 16 35 H 0.07 2.80 7.83 -2.39 -0.02 2.78 16 36 H 0.06 2.60 7.65 -2.38 -0.02 2.58 16 37 H 0.06 3.31 6.04 -2.38 -0.01 3.30 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -66.13 316.48 5.24 -60.89 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.01 Total: 20.38 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 3.27 Total: -53.79 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.23 Total: -52.82 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.30 Total: -21.25 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.13 5.24 -60.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.149 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds