Wall clock time and date at job start Mon Mar 30 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47014 * 2 1 4 4 C 1.38249 * 120.00468 * 267.75346 * 3 2 1 5 5 C 1.38210 * 120.00447 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99623 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.38218 * 119.99440 * 87.47607 * 3 2 1 9 9 C 1.50701 * 120.00191 * 0.02562 * 8 3 2 10 10 H 1.08997 * 110.55504 * 30.91583 * 9 8 3 11 11 C 1.55002 * 110.61443 * 267.86988 * 9 8 3 12 12 C 1.54816 * 102.09012 * 204.47456 * 11 9 8 13 13 C 1.54099 * 104.18626 * 20.88152 * 12 11 9 14 14 C 1.53004 * 110.00060 * 242.53423 * 13 12 11 15 15 C 1.50695 * 109.88008 * 121.45603 * 13 12 11 16 16 H 1.08007 * 119.99985 * 5.83743 * 15 13 12 17 17 C 1.37881 * 120.00152 * 185.84209 * 15 13 12 18 18 N 1.31509 * 119.99848 * 5.90947 * 17 15 13 19 19 Si 1.86798 * 119.99801 * 185.91248 * 17 15 13 20 20 H 1.48503 * 109.47082 * 94.98127 * 19 17 15 21 21 H 1.48503 * 109.46938 * 214.97840 * 19 17 15 22 22 H 1.48497 * 109.47383 * 334.97714 * 19 17 15 23 23 O 1.43741 * 107.29810 * 2.02588 * 13 12 11 24 24 H 1.08994 * 109.47024 * 306.26525 * 1 2 3 25 25 H 1.08995 * 109.47040 * 66.26903 * 1 2 3 26 26 H 1.09000 * 109.46884 * 186.26900 * 1 2 3 27 27 H 1.09009 * 109.47150 * 240.00855 * 2 1 3 28 28 H 1.08995 * 109.47432 * 120.00467 * 2 1 3 29 29 H 1.08007 * 120.00165 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00624 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.00149 * 179.97438 * 6 5 4 32 32 H 1.07997 * 120.00143 * 179.97438 * 7 6 5 33 33 H 1.09003 * 110.90714 * 322.67392 * 11 9 8 34 34 H 1.08997 * 110.90916 * 86.27850 * 11 9 8 35 35 H 1.08996 * 110.48582 * 262.20560 * 12 11 9 36 36 H 1.08995 * 110.48397 * 139.55525 * 12 11 9 37 37 H 1.08999 * 109.47178 * 181.40284 * 14 13 12 38 38 H 1.09000 * 109.46967 * 301.40506 * 14 13 12 39 39 H 1.08999 * 109.47073 * 61.40358 * 14 13 12 40 40 H 0.97007 * 119.99911 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3070 2.0570 -1.1963 5 6 2.7682 3.3599 -1.1963 6 6 2.9544 4.0273 0.0002 7 6 2.6787 3.3917 1.1962 8 6 2.2130 2.0899 1.1959 9 6 1.9081 1.3984 2.4997 10 1 2.0903 0.3270 2.4164 11 6 0.4465 1.6746 2.9353 12 6 0.5214 1.4731 4.4685 13 6 2.0164 1.6467 4.7995 14 6 2.5781 0.3472 5.3800 15 6 2.1951 2.7690 5.7891 16 1 1.3305 3.2486 6.2238 17 6 3.4625 3.1839 6.1395 18 7 4.5118 2.6819 5.5260 19 14 3.6890 4.4589 7.4857 20 1 3.9394 3.7738 8.7793 21 1 4.8461 5.3286 7.1541 22 1 2.4617 5.2879 7.5940 23 8 2.6919 1.9655 3.5715 24 1 -0.3633 0.6079 0.8285 25 1 -0.3633 0.4136 -0.9407 26 1 -0.3633 -1.0215 0.1122 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1620 1.5356 -2.1310 30 1 2.9832 3.8568 -2.1308 31 1 3.3151 5.0452 0.0003 32 1 2.8245 3.9128 2.1308 33 1 0.1542 2.6959 2.6910 34 1 -0.2369 0.9568 2.4816 35 1 0.1845 0.4724 4.7386 36 1 -0.0733 2.2286 4.9819 37 1 3.6288 0.4871 5.6341 38 1 2.0199 0.0789 6.2770 39 1 2.4856 -0.4500 4.6425 40 1 5.4035 2.9735 5.7727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310435327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:00 Heat of formation + Delta-G solvation = -31.877822 kcal Electronic energy + Delta-G solvation = -20238.554670 eV Core-core repulsion = 17403.662105 eV Total energy + Delta-G solvation = -2834.892565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58227 -37.82012 -34.04943 -32.98700 -31.15907 -30.86747 -29.18700 -28.74615 -25.49363 -24.62824 -23.59044 -21.88020 -20.94906 -19.53509 -19.28319 -16.86780 -15.98717 -15.78810 -14.82793 -14.49015 -14.11363 -13.79228 -13.58086 -13.33868 -13.08615 -12.92939 -12.56041 -12.41219 -12.02173 -11.75868 -11.54504 -11.32503 -11.26108 -10.95857 -10.85106 -10.60504 -10.42177 -10.39602 -10.29394 -10.08632 -9.78947 -9.49593 -9.00391 -8.48228 -8.34293 -8.21088 -7.87438 -5.93778 -4.07823 1.75323 1.85662 3.31097 3.38980 3.41402 4.17443 4.44298 4.92822 5.03695 5.13125 5.34621 5.38043 5.46049 5.53043 5.57175 5.67202 5.71535 5.79064 5.82743 5.88254 6.02771 6.20943 6.25196 6.27428 6.37005 6.45410 6.53154 6.59237 6.62872 6.78345 6.82849 6.86540 6.88536 7.02988 7.03520 7.21914 7.32816 7.47942 7.79477 8.01764 8.36703 8.58035 9.06448 9.61427 11.10148 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.006790 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.614194 B = 4122.510958 C = 4836.952389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.128 4.128 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.083 4.083 8 C -0.061 4.061 9 C 0.100 3.900 10 H 0.059 0.941 11 C -0.141 4.141 12 C -0.142 4.142 13 C 0.225 3.775 14 C -0.144 4.144 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.080 3.920 18 N -0.853 5.853 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.326 6.326 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.013 0.987 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -3.055 -10.793 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.101 4.101 8 C -0.061 4.061 9 C 0.041 3.959 10 H 0.077 0.923 11 C -0.179 4.179 12 C -0.179 4.179 13 C 0.188 3.812 14 C -0.202 4.202 15 C -0.565 4.565 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.488 5.488 19 Si 0.712 3.288 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 O -0.245 6.245 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.032 0.968 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.383 -2.937 -10.814 12.431 hybrid contribution 0.095 0.627 0.688 0.936 sum -5.288 -2.310 -10.126 11.655 Atomic orbital electron populations 1.21896 0.95017 1.01620 1.02382 1.20555 0.96077 0.93172 1.02625 1.19636 1.00096 0.95952 0.92605 1.20821 1.01685 0.95211 0.96862 1.20998 1.01040 0.95048 0.97656 1.21141 1.01324 0.99858 0.92641 1.21230 0.95833 0.94491 0.98550 1.19726 0.98311 0.94413 0.93682 1.21786 0.90969 0.95571 0.87573 0.92308 1.23159 0.96567 1.01272 0.96884 1.23088 1.00561 1.00204 0.94096 1.19644 0.84891 0.93351 0.83360 1.22102 1.03782 0.96312 0.97963 1.21064 0.92368 1.19276 1.23791 0.92032 1.25022 0.96221 0.95852 0.95473 1.70078 0.97947 1.41937 1.38843 0.86721 0.77858 0.81777 0.82449 1.20681 1.21209 1.19861 1.89360 1.46635 1.75176 1.13335 0.91585 0.92948 0.92723 0.91592 0.90625 0.86829 0.86886 0.86618 0.84563 0.91515 0.91872 0.93001 0.91557 0.90652 0.94470 0.96806 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.90 37.16 0.37 -1.44 16 2 C -0.09 -1.17 5.61 -27.88 -0.16 -1.32 16 3 C -0.08 -1.32 5.13 -104.62 -0.54 -1.86 16 4 C -0.13 -1.84 9.69 -39.59 -0.38 -2.23 16 5 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 6 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 7 C -0.08 -1.61 9.38 -39.58 -0.37 -1.98 16 8 C -0.06 -1.15 5.10 -104.62 -0.53 -1.69 16 9 C 0.10 2.03 3.05 -26.83 -0.08 1.95 16 10 H 0.06 1.17 6.06 -51.93 -0.31 0.86 16 11 C -0.14 -2.63 6.11 -24.72 -0.15 -2.78 16 12 C -0.14 -2.94 6.27 -25.20 -0.16 -3.10 16 13 C 0.23 5.58 0.74 -91.20 -0.07 5.51 16 14 C -0.14 -3.44 8.47 37.16 0.31 -3.13 16 15 C -0.53 -14.40 8.21 -34.44 -0.28 -14.68 16 16 H 0.06 1.66 7.36 -52.48 -0.39 1.27 16 17 C 0.08 2.22 5.21 -17.82 -0.09 2.12 16 18 N -0.85 -24.52 11.24 55.43 0.62 -23.90 16 19 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 O -0.33 -8.29 8.55 -35.23 -0.30 -8.59 16 24 H 0.07 0.86 5.16 -51.93 -0.27 0.59 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.76 8.07 -51.92 -0.42 0.35 16 28 H 0.08 1.08 6.09 -51.93 -0.32 0.76 16 29 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.14 2.97 7.42 -52.49 -0.39 2.58 16 33 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 34 H 0.06 1.00 5.80 -51.93 -0.30 0.70 16 35 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 36 H 0.07 1.38 7.41 -51.93 -0.38 0.99 16 37 H 0.07 2.01 6.67 -51.93 -0.35 1.66 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.29 8.10 -51.93 -0.42 -0.13 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -29.34 314.44 -8.93 -38.27 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.04 Total: 2.80 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -2.93 Total: -29.41 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.62 Total: -23.90 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.30 Total: -8.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.34 -8.93 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.392 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds