Wall clock time and date at job start Mon Mar 30 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47014 * 2 1 4 4 C 1.38249 * 120.00468 * 267.75346 * 3 2 1 5 5 C 1.38210 * 120.00447 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99623 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00222 * 359.97438 * 6 5 4 8 8 C 1.38218 * 119.99440 * 87.47607 * 3 2 1 9 9 C 1.50701 * 120.00191 * 0.02562 * 8 3 2 10 10 H 1.08997 * 110.55504 * 30.91583 * 9 8 3 11 11 C 1.55002 * 110.61443 * 267.86988 * 9 8 3 12 12 C 1.54816 * 102.09012 * 204.47456 * 11 9 8 13 13 C 1.54099 * 104.18626 * 20.88152 * 12 11 9 14 14 C 1.53004 * 110.00060 * 242.53423 * 13 12 11 15 15 C 1.50695 * 109.88008 * 121.45603 * 13 12 11 16 16 H 1.08007 * 119.99985 * 5.83743 * 15 13 12 17 17 C 1.37881 * 120.00152 * 185.84209 * 15 13 12 18 18 N 1.31509 * 119.99848 * 5.90947 * 17 15 13 19 19 Si 1.86798 * 119.99801 * 185.91248 * 17 15 13 20 20 H 1.48503 * 109.47082 * 94.98127 * 19 17 15 21 21 H 1.48503 * 109.46938 * 214.97840 * 19 17 15 22 22 H 1.48497 * 109.47383 * 334.97714 * 19 17 15 23 23 O 1.43741 * 107.29810 * 2.02588 * 13 12 11 24 24 H 1.08994 * 109.47024 * 306.26525 * 1 2 3 25 25 H 1.08995 * 109.47040 * 66.26903 * 1 2 3 26 26 H 1.09000 * 109.46884 * 186.26900 * 1 2 3 27 27 H 1.09009 * 109.47150 * 240.00855 * 2 1 3 28 28 H 1.08995 * 109.47432 * 120.00467 * 2 1 3 29 29 H 1.08007 * 120.00165 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00624 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.00149 * 179.97438 * 6 5 4 32 32 H 1.07997 * 120.00143 * 179.97438 * 7 6 5 33 33 H 1.09003 * 110.90714 * 322.67392 * 11 9 8 34 34 H 1.08997 * 110.90916 * 86.27850 * 11 9 8 35 35 H 1.08996 * 110.48582 * 262.20560 * 12 11 9 36 36 H 1.08995 * 110.48397 * 139.55525 * 12 11 9 37 37 H 1.08999 * 109.47178 * 181.40284 * 14 13 12 38 38 H 1.09000 * 109.46967 * 301.40506 * 14 13 12 39 39 H 1.08999 * 109.47073 * 61.40358 * 14 13 12 40 40 H 0.97007 * 119.99911 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3070 2.0570 -1.1963 5 6 2.7682 3.3599 -1.1963 6 6 2.9544 4.0273 0.0002 7 6 2.6787 3.3917 1.1962 8 6 2.2130 2.0899 1.1959 9 6 1.9081 1.3984 2.4997 10 1 2.0903 0.3270 2.4164 11 6 0.4465 1.6746 2.9353 12 6 0.5214 1.4731 4.4685 13 6 2.0164 1.6467 4.7995 14 6 2.5781 0.3472 5.3800 15 6 2.1951 2.7690 5.7891 16 1 1.3305 3.2486 6.2238 17 6 3.4625 3.1839 6.1395 18 7 4.5118 2.6819 5.5260 19 14 3.6890 4.4589 7.4857 20 1 3.9394 3.7738 8.7793 21 1 4.8461 5.3286 7.1541 22 1 2.4617 5.2879 7.5940 23 8 2.6919 1.9655 3.5715 24 1 -0.3633 0.6079 0.8285 25 1 -0.3633 0.4136 -0.9407 26 1 -0.3633 -1.0215 0.1122 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1620 1.5356 -2.1310 30 1 2.9832 3.8568 -2.1308 31 1 3.3151 5.0452 0.0003 32 1 2.8245 3.9128 2.1308 33 1 0.1542 2.6959 2.6910 34 1 -0.2369 0.9568 2.4816 35 1 0.1845 0.4724 4.7386 36 1 -0.0733 2.2286 4.9819 37 1 3.6288 0.4871 5.6341 38 1 2.0199 0.0789 6.2770 39 1 2.4856 -0.4500 4.6425 40 1 5.4035 2.9735 5.7727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310435327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:00 Heat of formation + Delta-G solvation = -46.686229 kcal Electronic energy + Delta-G solvation = -20239.196811 eV Core-core repulsion = 17403.662105 eV Total energy + Delta-G solvation = -2835.534705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99739 -39.39804 -35.28449 -34.80867 -32.82603 -32.53928 -30.56796 -30.14397 -27.42764 -26.35727 -24.67512 -23.37090 -22.27434 -21.14967 -20.85681 -18.73610 -17.38922 -17.24725 -16.56508 -16.00442 -15.57873 -15.40549 -14.89654 -14.77585 -14.47439 -14.26724 -14.14732 -13.91680 -13.53294 -13.31570 -13.09274 -12.79137 -12.69000 -12.58604 -12.52918 -12.28664 -12.02280 -11.94912 -11.73356 -11.56532 -11.48321 -11.09500 -10.84861 -10.58942 -9.88695 -9.57648 -9.37249 -8.03415 -6.23711 0.50482 0.57845 1.39358 1.40633 1.50284 2.43061 2.89282 3.14339 3.61140 3.91835 3.94666 4.02806 4.10514 4.22251 4.29284 4.37768 4.45338 4.53688 4.59808 4.74111 4.79157 4.81125 4.86337 4.89346 4.99558 5.05660 5.13075 5.17890 5.20412 5.23753 5.26151 5.34773 5.39176 5.52227 5.65789 5.68568 5.73454 5.93397 6.03132 6.21885 6.35662 6.61390 7.13580 7.49867 8.99743 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.006790 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.614194 B = 4122.510958 C = 4836.952389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.115 4.115 8 C -0.087 4.087 9 C 0.098 3.902 10 H 0.062 0.938 11 C -0.128 4.128 12 C -0.138 4.138 13 C 0.209 3.791 14 C -0.135 4.135 15 C -0.546 4.546 16 H 0.056 0.944 17 C 0.032 3.968 18 N -0.884 5.884 19 Si 0.945 3.055 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.269 1.269 23 O -0.363 6.363 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.031 0.969 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -3.816 -13.084 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.138 4.138 6 C -0.156 4.156 7 C -0.133 4.133 8 C -0.087 4.087 9 C 0.040 3.960 10 H 0.080 0.920 11 C -0.165 4.165 12 C -0.176 4.176 13 C 0.171 3.829 14 C -0.193 4.193 15 C -0.584 4.584 16 H 0.075 0.925 17 C -0.170 4.170 18 N -0.520 5.520 19 Si 0.771 3.229 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.193 1.193 23 O -0.283 6.283 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.652 -3.700 -13.099 15.151 hybrid contribution 0.484 0.848 1.302 1.628 sum -6.169 -2.852 -11.797 13.615 Atomic orbital electron populations 1.21868 0.93668 1.02606 1.02416 1.20624 0.97176 0.91441 1.03182 1.19941 0.99379 0.97133 0.91964 1.21286 0.99851 0.95219 0.97632 1.21418 0.99196 0.95135 0.98086 1.21324 1.01247 1.00677 0.92386 1.21035 0.98779 0.95375 0.98157 1.19731 1.00290 0.94489 0.94159 1.21932 0.91226 0.95634 0.87256 0.92014 1.23080 0.96376 1.01643 0.95410 1.23002 0.97773 1.01236 0.95581 1.19763 0.87342 0.92602 0.83158 1.21981 1.01676 0.96845 0.98845 1.21459 0.92297 1.20006 1.24611 0.92546 1.25737 0.96032 0.97781 0.97486 1.70225 0.98099 1.43413 1.40288 0.85759 0.77643 0.79473 0.80009 1.19806 1.21306 1.19346 1.89289 1.48228 1.76063 1.14670 0.93110 0.91682 0.90885 0.89108 0.91988 0.83079 0.83163 0.85256 0.88890 0.92574 0.88457 0.90817 0.92180 0.94002 0.93445 0.95004 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.90 71.98 0.71 -2.31 16 2 C -0.09 -2.08 5.61 29.85 0.17 -1.91 16 3 C -0.08 -2.51 5.13 -19.86 -0.10 -2.61 16 4 C -0.12 -3.06 9.69 22.27 0.22 -2.85 16 5 C -0.12 -3.10 10.05 22.27 0.22 -2.87 16 6 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 7 C -0.12 -4.64 9.38 22.27 0.21 -4.43 16 8 C -0.09 -3.29 5.10 -19.86 -0.10 -3.39 16 9 C 0.10 4.04 3.05 30.53 0.09 4.13 16 10 H 0.06 2.47 6.06 -2.39 -0.01 2.46 16 11 C -0.13 -4.72 6.11 31.90 0.20 -4.52 16 12 C -0.14 -5.72 6.27 31.59 0.20 -5.52 16 13 C 0.21 10.64 0.74 -11.17 -0.01 10.63 16 14 C -0.14 -6.62 8.47 71.98 0.61 -6.01 16 15 C -0.55 -30.79 8.21 25.60 0.21 -30.58 16 16 H 0.06 3.13 7.36 -2.91 -0.02 3.11 16 17 C 0.03 1.85 5.21 84.66 0.44 2.29 16 18 N -0.88 -53.03 11.24 21.45 0.24 -52.79 16 19 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 O -0.36 -19.27 8.55 -148.98 -1.27 -20.55 16 24 H 0.05 1.18 5.16 -2.39 -0.01 1.17 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.72 8.07 -2.38 -0.02 1.70 16 28 H 0.06 1.65 6.09 -2.39 -0.01 1.64 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.09 4.46 7.42 -2.91 -0.02 4.43 16 33 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 34 H 0.10 2.89 5.80 -2.39 -0.01 2.87 16 35 H 0.07 2.68 7.70 -2.39 -0.02 2.66 16 36 H 0.06 2.51 7.41 -2.39 -0.02 2.50 16 37 H 0.04 2.29 6.67 -2.39 -0.02 2.28 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -66.59 314.44 5.29 -61.30 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.01 Total: 19.55 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.29 Total: -54.15 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.27 Total: -20.55 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.59 5.29 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310435327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.613 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds