Wall clock time and date at job start Mon Mar 30 2020 06:11:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 109.46795 * 2 1
4 4 C 1.53001 * 109.82754 * 61.87349 * 3 2 1
5 5 C 1.50699 * 109.47518 * 179.22407 * 4 3 2
6 6 C 1.38231 * 119.99721 * 263.67595 * 5 4 3
7 7 C 1.38241 * 119.99635 * 179.78430 * 6 5 4
8 8 C 1.38236 * 119.99869 * 0.46544 * 7 6 5
9 9 C 1.38235 * 119.99876 * 359.76279 * 8 7 6
10 10 C 1.38226 * 120.00328 * 0.02867 * 9 8 7
11 11 C 1.54385 * 109.82936 * 182.85018 * 3 2 1
12 12 C 1.55419 * 102.30835 * 140.79694 * 11 3 2
13 13 C 1.54944 * 100.89177 * 325.98998 * 12 11 3
14 14 H 1.08992 * 110.31391 * 277.36105 * 13 12 11
15 15 C 1.50708 * 110.30817 * 155.28585 * 13 12 11
16 16 H 1.07997 * 119.99866 * 1.39445 * 15 13 12
17 17 C 1.37876 * 120.00055 * 181.38978 * 15 13 12
18 18 N 1.31511 * 119.99907 * 180.02562 * 17 15 13
19 19 Si 1.86804 * 120.00029 * 0.02562 * 17 15 13
20 20 H 1.48494 * 109.46828 * 269.99884 * 19 17 15
21 21 H 1.48506 * 109.46954 * 29.99509 * 19 17 15
22 22 H 1.48492 * 109.46942 * 149.99685 * 19 17 15
23 23 O 1.43232 * 109.83313 * 300.98435 * 3 2 1
24 24 H 1.08996 * 109.47077 * 63.31960 * 1 2 3
25 25 H 1.09002 * 109.46710 * 183.31381 * 1 2 3
26 26 H 1.09001 * 109.47323 * 303.31344 * 1 2 3
27 27 H 1.08991 * 109.47437 * 239.99599 * 2 1 3
28 28 H 1.09008 * 109.46869 * 119.99617 * 2 1 3
29 29 H 1.09004 * 109.46649 * 299.22783 * 4 3 2
30 30 H 1.08999 * 109.47229 * 59.22249 * 4 3 2
31 31 H 1.08000 * 120.00435 * 359.97438 * 6 5 4
32 32 H 1.08004 * 120.00031 * 180.25030 * 7 6 5
33 33 H 1.08003 * 119.99893 * 179.79274 * 8 7 6
34 34 H 1.08005 * 119.99892 * 180.02562 * 9 8 7
35 35 H 1.08004 * 120.00140 * 179.97438 * 10 9 8
36 36 H 1.08999 * 110.84913 * 259.06229 * 11 3 2
37 37 H 1.09007 * 110.84696 * 22.47973 * 11 3 2
38 38 H 1.09001 * 111.21037 * 208.06315 * 12 11 3
39 39 H 1.08994 * 111.08523 * 83.86805 * 12 11 3
40 40 H 0.97001 * 119.99785 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 1.5731 2.1579 1.2693
5 6 2.0954 3.5715 1.2703
6 6 3.2579 3.8783 1.9524
7 6 3.7394 5.1742 1.9495
8 6 3.0532 6.1650 1.2726
9 6 1.8882 5.8590 0.5944
10 6 1.4090 4.5625 0.5936
11 6 3.5820 1.4529 -0.0722
12 6 3.8610 2.6475 -1.0265
13 6 2.6458 2.5485 -1.9825
14 1 2.8354 1.8087 -2.7602
15 6 2.3550 3.8923 -2.5997
16 1 2.9800 4.7411 -2.3647
17 6 1.2911 4.0380 -3.4646
18 7 1.0377 5.2105 -4.0035
19 14 0.2097 2.5700 -3.8707
20 1 0.7572 1.8652 -5.0576
21 1 0.1813 1.6407 -2.7127
22 1 -1.1689 3.0370 -4.1646
23 8 1.5479 2.1319 -1.1551
24 1 -0.3633 0.4614 -0.9182
25 1 -0.3633 -1.0260 0.0594
26 1 -0.3634 0.5644 0.8588
27 1 1.8934 -0.5138 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 0.4836 2.1731 1.2980
30 1 1.9523 1.6300 2.1443
31 1 3.7916 3.1051 2.4850
32 1 4.6499 5.4131 2.4791
33 1 3.4276 7.1780 1.2731
34 1 1.3523 6.6330 0.0651
35 1 0.4985 4.3235 0.0641
36 1 4.0153 1.6321 0.9118
37 1 3.9568 0.5208 -0.4953
38 1 4.7979 2.5104 -1.5665
39 1 3.8576 3.5924 -0.4832
40 1 0.2890 5.3131 -4.6116
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000310444722.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:11:01
Heat of formation + Delta-G solvation = -29.358731 kcal
Electronic energy + Delta-G solvation = -20970.650254 eV
Core-core repulsion = 18135.866925 eV
Total energy + Delta-G solvation = -2834.783329 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.152 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.74373 -37.82164 -34.03747 -32.12947 -31.78279 -30.93278 -30.14598 -28.38809
-26.28696 -24.27427 -22.12988 -21.85024 -20.92132 -20.14246 -18.87326 -16.75005
-16.22716 -15.73117 -15.18918 -14.53015 -14.48025 -13.87696 -13.56053 -13.35066
-12.88580 -12.78363 -12.52174 -12.26615 -12.17616 -11.95729 -11.91357 -11.52269
-11.23670 -10.88932 -10.70108 -10.57053 -10.44807 -10.32043 -10.05133 -9.90180
-9.68622 -9.58102 -9.25461 -8.48444 -8.24101 -8.15281 -7.87455 -6.02601
-4.07801 2.00881 2.10355 3.41565 3.47939 3.71935 4.43843 4.58611
4.77769 5.17830 5.26225 5.35763 5.44780 5.52301 5.59860 5.61151
5.65026 5.74077 5.80257 5.90775 5.95792 6.10456 6.16081 6.20785
6.25992 6.30247 6.34171 6.46840 6.52133 6.62848 6.67172 6.71249
6.74103 6.80282 6.88378 7.06205 7.23218 7.35489 7.38203 7.68585
7.72499 8.45262 8.54333 9.01876 9.62892 11.08059
Molecular weight = 260.15amu
Principal moments of inertia in cm(-1)
A = 0.016057 B = 0.011544 C = 0.008211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1743.386874 B = 2424.928427 C = 3409.154657
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.122 4.122
3 C 0.107 3.893
4 C -0.079 4.079
5 C -0.069 4.069
6 C -0.126 4.126
7 C -0.133 4.133
8 C -0.130 4.130
9 C -0.106 4.106
10 C -0.064 4.064
11 C -0.147 4.147
12 C -0.136 4.136
13 C 0.175 3.825
14 H 0.020 0.980
15 C -0.505 4.505
16 H 0.075 0.925
17 C 0.084 3.916
18 N -0.895 5.895
19 Si 0.861 3.139
20 H -0.289 1.289
21 H -0.219 1.219
22 H -0.295 1.295
23 O -0.361 6.361
24 H 0.065 0.935
25 H 0.041 0.959
26 H 0.052 0.948
27 H 0.060 0.940
28 H 0.058 0.942
29 H 0.074 0.926
30 H 0.065 0.935
31 H 0.108 0.892
32 H 0.109 0.891
33 H 0.110 0.890
34 H 0.116 0.884
35 H 0.122 0.878
36 H 0.066 0.934
37 H 0.061 0.939
38 H 0.056 0.944
39 H 0.079 0.921
40 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.237 -6.024 11.641 13.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.160 4.160
3 C 0.066 3.934
4 C -0.117 4.117
5 C -0.069 4.069
6 C -0.144 4.144
7 C -0.152 4.152
8 C -0.149 4.149
9 C -0.125 4.125
10 C -0.082 4.082
11 C -0.184 4.184
12 C -0.173 4.173
13 C 0.120 3.880
14 H 0.037 0.963
15 C -0.542 4.542
16 H 0.093 0.907
17 C -0.119 4.119
18 N -0.533 5.533
19 Si 0.688 3.312
20 H -0.215 1.215
21 H -0.142 1.142
22 H -0.221 1.221
23 O -0.281 6.281
24 H 0.084 0.916
25 H 0.060 0.940
26 H 0.071 0.929
27 H 0.079 0.921
28 H 0.076 0.924
29 H 0.092 0.908
30 H 0.083 0.917
31 H 0.126 0.874
32 H 0.127 0.873
33 H 0.128 0.872
34 H 0.134 0.866
35 H 0.140 0.860
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.075 0.925
39 H 0.098 0.902
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 1.911 -5.900 11.489 13.055
hybrid contribution -0.268 -0.632 -0.496 0.847
sum 1.643 -6.532 10.993 12.892
Atomic orbital electron populations
1.21760 0.95830 1.00178 1.02847 1.21826 0.96650 0.96441 1.01050
1.21848 0.92325 0.90766 0.88429 1.20918 1.01152 0.92439 0.97162
1.19626 0.95078 0.95017 0.97142 1.20842 0.96509 0.96075 1.01014
1.20886 0.99700 0.93452 1.01120 1.20988 0.96128 0.98729 0.99008
1.21095 0.96313 0.97129 0.97917 1.20960 1.00158 0.91889 0.95229
1.23160 0.95746 0.99222 1.00321 1.23211 0.99154 0.97763 0.97209
1.20877 0.83169 0.95228 0.88750 0.96281 1.20953 1.14503 0.94201
1.24545 0.90651 1.24985 0.96630 0.95662 0.94638 1.69931 1.29375
1.23413 1.30631 0.87126 0.79321 0.84883 0.79856 1.21546 1.14217
1.22143 1.88839 1.33253 1.73992 1.32011 0.91565 0.93978 0.92869
0.92144 0.92376 0.90752 0.91665 0.87356 0.87296 0.87195 0.86602
0.85996 0.91568 0.92066 0.92482 0.90220 0.92845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.25 9.49 37.16 0.35 -1.90 16
2 C -0.12 -1.87 5.08 -26.73 -0.14 -2.01 16
3 C 0.11 1.87 0.74 -89.89 -0.07 1.80 16
4 C -0.08 -1.27 4.24 -27.88 -0.12 -1.39 16
5 C -0.07 -1.19 3.17 -104.62 -0.33 -1.52 16
6 C -0.13 -1.99 7.47 -39.58 -0.30 -2.29 16
7 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16
8 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16
9 C -0.11 -2.00 10.05 -39.59 -0.40 -2.40 16
10 C -0.06 -1.25 8.93 -39.59 -0.35 -1.61 16
11 C -0.15 -2.45 5.56 -24.72 -0.14 -2.59 16
12 C -0.14 -2.73 5.96 -24.42 -0.15 -2.87 16
13 C 0.18 4.10 2.68 -26.85 -0.07 4.03 16
14 H 0.02 0.47 7.56 -51.93 -0.39 0.08 16
15 C -0.50 -13.88 9.37 -34.44 -0.32 -14.20 16
16 H 0.08 2.28 8.01 -52.49 -0.42 1.86 16
17 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16
18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16
19 Si 0.86 21.65 27.05 -169.99 -4.60 17.05 16
20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
21 H -0.22 -5.26 4.76 56.52 0.27 -4.99 16
22 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16
23 O -0.36 -7.90 5.92 -35.23 -0.21 -8.11 16
24 H 0.07 1.17 7.08 -51.93 -0.37 0.81 16
25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
26 H 0.05 0.75 6.36 -51.93 -0.33 0.42 16
27 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16
28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16
29 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16
30 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16
31 H 0.11 1.47 7.53 -52.49 -0.40 1.08 16
32 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16
33 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16
34 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16
35 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16
36 H 0.07 0.99 6.40 -51.93 -0.33 0.66 16
37 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16
38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
39 H 0.08 1.70 5.83 -51.93 -0.30 1.39 16
40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
LS Contribution 308.38 15.07 4.65 4.65
Total: -1.00 -29.68 308.38 -8.65 -38.34
By element:
Atomic # 1 Polarization: 10.42 SS G_CDS: -6.35 Total: 4.07 kcal
Atomic # 6 Polarization: -26.77 SS G_CDS: -2.92 Total: -29.68 kcal
Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.31 kcal
Atomic # 8 Polarization: -7.90 SS G_CDS: -0.21 Total: -8.11 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -4.60 Total: 17.05 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -29.68 -8.65 -38.34 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000310444722.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.976 kcal
(2) G-P(sol) polarization free energy of solvation -29.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds