Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.82754 * 61.87349 * 3 2 1 5 5 C 1.50699 * 109.47518 * 179.22407 * 4 3 2 6 6 C 1.38231 * 119.99721 * 263.67595 * 5 4 3 7 7 C 1.38241 * 119.99635 * 179.78430 * 6 5 4 8 8 C 1.38236 * 119.99869 * 0.46544 * 7 6 5 9 9 C 1.38235 * 119.99876 * 359.76279 * 8 7 6 10 10 C 1.38226 * 120.00328 * 0.02867 * 9 8 7 11 11 C 1.54385 * 109.82936 * 182.85018 * 3 2 1 12 12 C 1.55419 * 102.30835 * 140.79694 * 11 3 2 13 13 C 1.54944 * 100.89177 * 325.98998 * 12 11 3 14 14 H 1.08992 * 110.31391 * 277.36105 * 13 12 11 15 15 C 1.50708 * 110.30817 * 155.28585 * 13 12 11 16 16 H 1.07997 * 119.99866 * 1.39445 * 15 13 12 17 17 C 1.37876 * 120.00055 * 181.38978 * 15 13 12 18 18 N 1.31511 * 119.99907 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 120.00029 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.46828 * 269.99884 * 19 17 15 21 21 H 1.48506 * 109.46954 * 29.99509 * 19 17 15 22 22 H 1.48492 * 109.46942 * 149.99685 * 19 17 15 23 23 O 1.43232 * 109.83313 * 300.98435 * 3 2 1 24 24 H 1.08996 * 109.47077 * 63.31960 * 1 2 3 25 25 H 1.09002 * 109.46710 * 183.31381 * 1 2 3 26 26 H 1.09001 * 109.47323 * 303.31344 * 1 2 3 27 27 H 1.08991 * 109.47437 * 239.99599 * 2 1 3 28 28 H 1.09008 * 109.46869 * 119.99617 * 2 1 3 29 29 H 1.09004 * 109.46649 * 299.22783 * 4 3 2 30 30 H 1.08999 * 109.47229 * 59.22249 * 4 3 2 31 31 H 1.08000 * 120.00435 * 359.97438 * 6 5 4 32 32 H 1.08004 * 120.00031 * 180.25030 * 7 6 5 33 33 H 1.08003 * 119.99893 * 179.79274 * 8 7 6 34 34 H 1.08005 * 119.99892 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.00140 * 179.97438 * 10 9 8 36 36 H 1.08999 * 110.84913 * 259.06229 * 11 3 2 37 37 H 1.09007 * 110.84696 * 22.47973 * 11 3 2 38 38 H 1.09001 * 111.21037 * 208.06315 * 12 11 3 39 39 H 1.08994 * 111.08523 * 83.86805 * 12 11 3 40 40 H 0.97001 * 119.99785 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5731 2.1579 1.2693 5 6 2.0954 3.5715 1.2703 6 6 3.2579 3.8783 1.9524 7 6 3.7394 5.1742 1.9495 8 6 3.0532 6.1650 1.2726 9 6 1.8882 5.8590 0.5944 10 6 1.4090 4.5625 0.5936 11 6 3.5820 1.4529 -0.0722 12 6 3.8610 2.6475 -1.0265 13 6 2.6458 2.5485 -1.9825 14 1 2.8354 1.8087 -2.7602 15 6 2.3550 3.8923 -2.5997 16 1 2.9800 4.7411 -2.3647 17 6 1.2911 4.0380 -3.4646 18 7 1.0377 5.2105 -4.0035 19 14 0.2097 2.5700 -3.8707 20 1 0.7572 1.8652 -5.0576 21 1 0.1813 1.6407 -2.7127 22 1 -1.1689 3.0370 -4.1646 23 8 1.5479 2.1319 -1.1551 24 1 -0.3633 0.4614 -0.9182 25 1 -0.3633 -1.0260 0.0594 26 1 -0.3634 0.5644 0.8588 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4836 2.1731 1.2980 30 1 1.9523 1.6300 2.1443 31 1 3.7916 3.1051 2.4850 32 1 4.6499 5.4131 2.4791 33 1 3.4276 7.1780 1.2731 34 1 1.3523 6.6330 0.0651 35 1 0.4985 4.3235 0.0641 36 1 4.0153 1.6321 0.9118 37 1 3.9568 0.5208 -0.4953 38 1 4.7979 2.5104 -1.5665 39 1 3.8576 3.5924 -0.4832 40 1 0.2890 5.3131 -4.6116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310444722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = -29.358731 kcal Electronic energy + Delta-G solvation = -20970.650254 eV Core-core repulsion = 18135.866925 eV Total energy + Delta-G solvation = -2834.783329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74373 -37.82164 -34.03747 -32.12947 -31.78279 -30.93278 -30.14598 -28.38809 -26.28696 -24.27427 -22.12988 -21.85024 -20.92132 -20.14246 -18.87326 -16.75005 -16.22716 -15.73117 -15.18918 -14.53015 -14.48025 -13.87696 -13.56053 -13.35066 -12.88580 -12.78363 -12.52174 -12.26615 -12.17616 -11.95729 -11.91357 -11.52269 -11.23670 -10.88932 -10.70108 -10.57053 -10.44807 -10.32043 -10.05133 -9.90180 -9.68622 -9.58102 -9.25461 -8.48444 -8.24101 -8.15281 -7.87455 -6.02601 -4.07801 2.00881 2.10355 3.41565 3.47939 3.71935 4.43843 4.58611 4.77769 5.17830 5.26225 5.35763 5.44780 5.52301 5.59860 5.61151 5.65026 5.74077 5.80257 5.90775 5.95792 6.10456 6.16081 6.20785 6.25992 6.30247 6.34171 6.46840 6.52133 6.62848 6.67172 6.71249 6.74103 6.80282 6.88378 7.06205 7.23218 7.35489 7.38203 7.68585 7.72499 8.45262 8.54333 9.01876 9.62892 11.08059 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.011544 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.386874 B = 2424.928427 C = 3409.154657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.107 3.893 4 C -0.079 4.079 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.130 4.130 9 C -0.106 4.106 10 C -0.064 4.064 11 C -0.147 4.147 12 C -0.136 4.136 13 C 0.175 3.825 14 H 0.020 0.980 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.084 3.916 18 N -0.895 5.895 19 Si 0.861 3.139 20 H -0.289 1.289 21 H -0.219 1.219 22 H -0.295 1.295 23 O -0.361 6.361 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -6.024 11.641 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.149 4.149 9 C -0.125 4.125 10 C -0.082 4.082 11 C -0.184 4.184 12 C -0.173 4.173 13 C 0.120 3.880 14 H 0.037 0.963 15 C -0.542 4.542 16 H 0.093 0.907 17 C -0.119 4.119 18 N -0.533 5.533 19 Si 0.688 3.312 20 H -0.215 1.215 21 H -0.142 1.142 22 H -0.221 1.221 23 O -0.281 6.281 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.911 -5.900 11.489 13.055 hybrid contribution -0.268 -0.632 -0.496 0.847 sum 1.643 -6.532 10.993 12.892 Atomic orbital electron populations 1.21760 0.95830 1.00178 1.02847 1.21826 0.96650 0.96441 1.01050 1.21848 0.92325 0.90766 0.88429 1.20918 1.01152 0.92439 0.97162 1.19626 0.95078 0.95017 0.97142 1.20842 0.96509 0.96075 1.01014 1.20886 0.99700 0.93452 1.01120 1.20988 0.96128 0.98729 0.99008 1.21095 0.96313 0.97129 0.97917 1.20960 1.00158 0.91889 0.95229 1.23160 0.95746 0.99222 1.00321 1.23211 0.99154 0.97763 0.97209 1.20877 0.83169 0.95228 0.88750 0.96281 1.20953 1.14503 0.94201 1.24545 0.90651 1.24985 0.96630 0.95662 0.94638 1.69931 1.29375 1.23413 1.30631 0.87126 0.79321 0.84883 0.79856 1.21546 1.14217 1.22143 1.88839 1.33253 1.73992 1.32011 0.91565 0.93978 0.92869 0.92144 0.92376 0.90752 0.91665 0.87356 0.87296 0.87195 0.86602 0.85996 0.91568 0.92066 0.92482 0.90220 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.49 37.16 0.35 -1.90 16 2 C -0.12 -1.87 5.08 -26.73 -0.14 -2.01 16 3 C 0.11 1.87 0.74 -89.89 -0.07 1.80 16 4 C -0.08 -1.27 4.24 -27.88 -0.12 -1.39 16 5 C -0.07 -1.19 3.17 -104.62 -0.33 -1.52 16 6 C -0.13 -1.99 7.47 -39.58 -0.30 -2.29 16 7 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 8 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 9 C -0.11 -2.00 10.05 -39.59 -0.40 -2.40 16 10 C -0.06 -1.25 8.93 -39.59 -0.35 -1.61 16 11 C -0.15 -2.45 5.56 -24.72 -0.14 -2.59 16 12 C -0.14 -2.73 5.96 -24.42 -0.15 -2.87 16 13 C 0.18 4.10 2.68 -26.85 -0.07 4.03 16 14 H 0.02 0.47 7.56 -51.93 -0.39 0.08 16 15 C -0.50 -13.88 9.37 -34.44 -0.32 -14.20 16 16 H 0.08 2.28 8.01 -52.49 -0.42 1.86 16 17 C 0.08 2.40 5.47 -17.82 -0.10 2.31 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 19 Si 0.86 21.65 27.05 -169.99 -4.60 17.05 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.22 -5.26 4.76 56.52 0.27 -4.99 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 23 O -0.36 -7.90 5.92 -35.23 -0.21 -8.11 16 24 H 0.07 1.17 7.08 -51.93 -0.37 0.81 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.75 6.36 -51.93 -0.33 0.42 16 27 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16 30 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.11 1.47 7.53 -52.49 -0.40 1.08 16 32 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 34 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 35 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 36 H 0.07 0.99 6.40 -51.93 -0.33 0.66 16 37 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.70 5.83 -51.93 -0.30 1.39 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -29.68 308.38 -8.65 -38.34 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.35 Total: 4.07 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -2.92 Total: -29.68 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.21 Total: -8.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.60 Total: 17.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.68 -8.65 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.976 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds