Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.82754 * 61.87349 * 3 2 1 5 5 C 1.50699 * 109.47518 * 179.22407 * 4 3 2 6 6 C 1.38231 * 119.99721 * 263.67595 * 5 4 3 7 7 C 1.38241 * 119.99635 * 179.78430 * 6 5 4 8 8 C 1.38236 * 119.99869 * 0.46544 * 7 6 5 9 9 C 1.38235 * 119.99876 * 359.76279 * 8 7 6 10 10 C 1.38226 * 120.00328 * 0.02867 * 9 8 7 11 11 C 1.54385 * 109.82936 * 182.85018 * 3 2 1 12 12 C 1.55419 * 102.30835 * 140.79694 * 11 3 2 13 13 C 1.54944 * 100.89177 * 325.98998 * 12 11 3 14 14 H 1.08992 * 110.31391 * 277.36105 * 13 12 11 15 15 C 1.50708 * 110.30817 * 155.28585 * 13 12 11 16 16 H 1.07997 * 119.99866 * 1.39445 * 15 13 12 17 17 C 1.37876 * 120.00055 * 181.38978 * 15 13 12 18 18 N 1.31511 * 119.99907 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 120.00029 * 0.02562 * 17 15 13 20 20 H 1.48494 * 109.46828 * 269.99884 * 19 17 15 21 21 H 1.48506 * 109.46954 * 29.99509 * 19 17 15 22 22 H 1.48492 * 109.46942 * 149.99685 * 19 17 15 23 23 O 1.43232 * 109.83313 * 300.98435 * 3 2 1 24 24 H 1.08996 * 109.47077 * 63.31960 * 1 2 3 25 25 H 1.09002 * 109.46710 * 183.31381 * 1 2 3 26 26 H 1.09001 * 109.47323 * 303.31344 * 1 2 3 27 27 H 1.08991 * 109.47437 * 239.99599 * 2 1 3 28 28 H 1.09008 * 109.46869 * 119.99617 * 2 1 3 29 29 H 1.09004 * 109.46649 * 299.22783 * 4 3 2 30 30 H 1.08999 * 109.47229 * 59.22249 * 4 3 2 31 31 H 1.08000 * 120.00435 * 359.97438 * 6 5 4 32 32 H 1.08004 * 120.00031 * 180.25030 * 7 6 5 33 33 H 1.08003 * 119.99893 * 179.79274 * 8 7 6 34 34 H 1.08005 * 119.99892 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.00140 * 179.97438 * 10 9 8 36 36 H 1.08999 * 110.84913 * 259.06229 * 11 3 2 37 37 H 1.09007 * 110.84696 * 22.47973 * 11 3 2 38 38 H 1.09001 * 111.21037 * 208.06315 * 12 11 3 39 39 H 1.08994 * 111.08523 * 83.86805 * 12 11 3 40 40 H 0.97001 * 119.99785 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5731 2.1579 1.2693 5 6 2.0954 3.5715 1.2703 6 6 3.2579 3.8783 1.9524 7 6 3.7394 5.1742 1.9495 8 6 3.0532 6.1650 1.2726 9 6 1.8882 5.8590 0.5944 10 6 1.4090 4.5625 0.5936 11 6 3.5820 1.4529 -0.0722 12 6 3.8610 2.6475 -1.0265 13 6 2.6458 2.5485 -1.9825 14 1 2.8354 1.8087 -2.7602 15 6 2.3550 3.8923 -2.5997 16 1 2.9800 4.7411 -2.3647 17 6 1.2911 4.0380 -3.4646 18 7 1.0377 5.2105 -4.0035 19 14 0.2097 2.5700 -3.8707 20 1 0.7572 1.8652 -5.0576 21 1 0.1813 1.6407 -2.7127 22 1 -1.1689 3.0370 -4.1646 23 8 1.5479 2.1319 -1.1551 24 1 -0.3633 0.4614 -0.9182 25 1 -0.3633 -1.0260 0.0594 26 1 -0.3634 0.5644 0.8588 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4836 2.1731 1.2980 30 1 1.9523 1.6300 2.1443 31 1 3.7916 3.1051 2.4850 32 1 4.6499 5.4131 2.4791 33 1 3.4276 7.1780 1.2731 34 1 1.3523 6.6330 0.0651 35 1 0.4985 4.3235 0.0641 36 1 4.0153 1.6321 0.9118 37 1 3.9568 0.5208 -0.4953 38 1 4.7979 2.5104 -1.5665 39 1 3.8576 3.5924 -0.4832 40 1 0.2890 5.3131 -4.6116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310444722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = -45.132109 kcal Electronic energy + Delta-G solvation = -20971.334239 eV Core-core repulsion = 18135.866925 eV Total energy + Delta-G solvation = -2835.467314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17788 -39.23347 -35.62836 -34.15306 -33.11800 -32.40937 -31.51060 -30.00577 -27.85459 -25.77608 -23.60487 -23.25756 -22.27185 -21.79849 -20.28800 -18.84419 -17.56895 -17.26566 -16.80404 -16.17095 -15.83579 -15.32370 -15.03568 -14.81485 -14.62804 -14.17870 -14.12472 -13.96341 -13.44327 -13.43714 -13.27837 -12.86883 -12.80370 -12.61878 -12.22791 -11.98861 -11.88271 -11.75593 -11.63459 -11.53644 -11.25163 -11.14735 -11.07139 -10.64541 -9.88728 -9.56097 -9.24827 -8.25604 -6.32780 0.67049 0.75277 1.36407 1.39594 1.69026 2.46324 2.99581 3.10293 3.53284 3.88608 3.99086 4.15202 4.16834 4.27554 4.31785 4.40119 4.42908 4.54230 4.58611 4.63781 4.74758 4.81639 4.85688 4.93873 4.99550 5.03820 5.11163 5.18099 5.23836 5.31172 5.36454 5.39079 5.46816 5.57822 5.64610 5.69360 5.74739 5.85006 6.00068 6.33331 6.35423 6.65441 6.92812 7.41469 8.88765 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.011544 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.386874 B = 2424.928427 C = 3409.154657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.094 3.906 4 C -0.077 4.077 5 C -0.072 4.072 6 C -0.121 4.121 7 C -0.128 4.128 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.089 4.089 11 C -0.133 4.133 12 C -0.134 4.134 13 C 0.176 3.824 14 H 0.013 0.987 15 C -0.495 4.495 16 H 0.033 0.967 17 C 0.029 3.971 18 N -0.944 5.944 19 Si 0.920 3.080 20 H -0.286 1.286 21 H -0.201 1.201 22 H -0.302 1.302 23 O -0.380 6.380 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -9.115 14.431 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.054 3.946 4 C -0.114 4.114 5 C -0.072 4.072 6 C -0.139 4.139 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.108 4.108 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.120 3.880 14 H 0.031 0.969 15 C -0.533 4.533 16 H 0.052 0.948 17 C -0.169 4.169 18 N -0.585 5.585 19 Si 0.746 3.254 20 H -0.213 1.213 21 H -0.123 1.123 22 H -0.229 1.229 23 O -0.301 6.301 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.508 -9.009 14.297 17.259 hybrid contribution -0.704 0.396 -1.289 1.521 sum 2.804 -8.612 13.009 15.851 Atomic orbital electron populations 1.21745 0.96028 1.01433 1.01368 1.21832 0.96475 0.94713 1.02590 1.22236 0.93259 0.91940 0.87177 1.20973 1.01001 0.91635 0.97817 1.19805 0.95508 0.95180 0.96743 1.21231 0.95571 0.97063 1.00011 1.21320 1.00302 0.93020 0.99974 1.21236 0.95284 1.00367 0.98692 1.21126 0.97887 0.96866 0.99431 1.20809 0.99962 0.93094 0.96892 1.23146 0.94929 0.98133 1.00862 1.23103 0.97799 0.98961 0.97296 1.20627 0.85185 0.92432 0.89712 0.96934 1.21110 1.13032 0.95059 1.24105 0.94845 1.25754 0.98225 0.97933 0.94983 1.70071 1.30504 1.25596 1.32324 0.86214 0.77032 0.82113 0.80072 1.21270 1.12295 1.22930 1.88738 1.32835 1.74848 1.33637 0.94990 0.91634 0.92160 0.92670 0.88684 0.91428 0.87787 0.83700 0.83765 0.85454 0.88566 0.89422 0.88692 0.90204 0.91801 0.91753 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.49 71.98 0.68 -3.35 16 2 C -0.12 -3.11 5.08 30.59 0.16 -2.96 16 3 C 0.09 2.96 0.74 -10.32 -0.01 2.95 16 4 C -0.08 -2.21 4.24 29.85 0.13 -2.08 16 5 C -0.07 -2.38 3.17 -19.87 -0.06 -2.44 16 6 C -0.12 -3.35 7.47 22.27 0.17 -3.18 16 7 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 8 C -0.14 -4.55 10.05 22.27 0.22 -4.33 16 9 C -0.13 -5.37 10.05 22.27 0.22 -5.15 16 10 C -0.09 -3.61 8.93 22.27 0.20 -3.42 16 11 C -0.13 -3.85 5.56 31.90 0.18 -3.68 16 12 C -0.13 -5.14 5.96 32.09 0.19 -4.94 16 13 C 0.18 8.23 2.68 30.52 0.08 8.31 16 14 H 0.01 0.62 7.56 -2.39 -0.02 0.61 16 15 C -0.50 -28.37 9.37 25.60 0.24 -28.13 16 16 H 0.03 2.14 8.01 -2.91 -0.02 2.12 16 17 C 0.03 1.74 5.47 84.65 0.46 2.20 16 18 N -0.94 -60.28 13.96 21.45 0.30 -59.98 16 19 Si 0.92 46.30 27.05 68.60 1.86 48.15 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.20 -9.44 4.76 99.48 0.47 -8.97 16 22 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 23 O -0.38 -16.33 5.92 -148.98 -0.88 -17.21 16 24 H 0.03 1.07 7.08 -2.39 -0.02 1.05 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.53 6.36 -2.39 -0.02 1.51 16 27 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.07 2.03 6.46 -2.39 -0.02 2.01 16 30 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16 31 H 0.15 2.98 7.53 -2.91 -0.02 2.96 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.10 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.09 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.09 2.23 6.40 -2.39 -0.02 2.21 16 37 H 0.08 2.06 7.83 -2.38 -0.02 2.04 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 2.67 5.83 -2.39 -0.01 2.65 16 40 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -68.75 308.38 5.12 -63.63 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.77 Total: 18.96 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.08 Total: -53.55 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.30 Total: -59.98 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.88 Total: -17.21 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.86 Total: 48.15 kcal Total: -68.75 5.12 -63.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds