Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 C 1.52996 * 109.87266 * 62.91743 * 3 2 1 5 5 C 1.50699 * 109.47489 * 182.19294 * 4 3 2 6 6 C 1.38231 * 120.00269 * 272.58987 * 5 4 3 7 7 C 1.38236 * 120.00218 * 179.74557 * 6 5 4 8 8 C 1.38235 * 119.99729 * 0.52282 * 7 6 5 9 9 C 1.38239 * 120.00118 * 359.74725 * 8 7 6 10 10 C 1.38235 * 119.99680 * 359.97438 * 9 8 7 11 11 C 1.54105 * 109.87832 * 184.07595 * 3 2 1 12 12 C 1.54818 * 104.18640 * 121.45442 * 11 3 2 13 13 C 1.54996 * 102.09033 * 20.88062 * 12 11 3 14 14 H 1.08993 * 110.61714 * 81.47883 * 13 12 11 15 15 C 1.50703 * 110.61384 * 204.47440 * 13 12 11 16 16 H 1.07993 * 120.00091 * 355.52583 * 15 13 12 17 17 C 1.37877 * 119.99717 * 175.52721 * 15 13 12 18 18 N 1.31521 * 120.00115 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00060 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47306 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47261 * 120.00006 * 19 17 15 22 22 H 1.48497 * 109.47491 * 239.99825 * 19 17 15 23 23 O 1.43746 * 109.88202 * 301.90712 * 3 2 1 24 24 H 1.08997 * 109.47331 * 183.49637 * 1 2 3 25 25 H 1.09000 * 109.47159 * 303.50088 * 1 2 3 26 26 H 1.09004 * 109.47088 * 63.49332 * 1 2 3 27 27 H 1.08997 * 109.47270 * 240.00336 * 2 1 3 28 28 H 1.08992 * 109.47356 * 119.99904 * 2 1 3 29 29 H 1.09003 * 109.46716 * 302.19399 * 4 3 2 30 30 H 1.09006 * 109.47335 * 62.19224 * 4 3 2 31 31 H 1.08003 * 119.99694 * 359.97438 * 6 5 4 32 32 H 1.07994 * 120.00163 * 180.29732 * 7 6 5 33 33 H 1.07999 * 120.00026 * 179.77344 * 8 7 6 34 34 H 1.08001 * 120.00317 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.99691 * 179.97438 * 10 9 8 36 36 H 1.08998 * 110.48739 * 240.13141 * 11 3 2 37 37 H 1.08998 * 110.48496 * 2.64675 * 11 3 2 38 38 H 1.08994 * 110.90695 * 139.07946 * 12 11 3 39 39 H 1.09002 * 110.90129 * 262.65085 * 12 11 3 40 40 H 0.97000 * 120.00081 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5957 2.1512 1.2811 5 6 2.0564 3.5857 1.2473 6 6 3.3143 3.9188 1.7136 7 6 3.7389 5.2339 1.6778 8 6 2.9013 6.2174 1.1856 9 6 1.6412 5.8851 0.7245 10 6 1.2189 4.5691 0.7551 11 6 3.5775 1.4547 -0.1030 12 6 3.8653 2.2711 -1.3866 13 6 2.5509 3.0734 -1.5626 14 1 2.5503 3.9545 -0.9211 15 6 2.3576 3.4652 -3.0049 16 1 3.1244 3.2432 -3.7323 17 6 1.2016 4.1071 -3.3959 18 7 0.2680 4.3779 -2.5100 19 14 0.9622 4.5934 -5.1835 20 1 2.1501 4.1795 -5.9725 21 1 -0.2476 3.9210 -5.7216 22 1 0.7932 6.0657 -5.2776 23 8 1.5293 2.1416 -1.1475 24 1 -0.3634 -1.0257 0.0627 25 1 -0.3633 0.5672 0.8569 26 1 -0.3633 0.4587 -0.9197 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5086 2.1203 1.3550 30 1 2.0330 1.6494 2.1443 31 1 3.9669 3.1511 2.1025 32 1 4.7235 5.4935 2.0376 33 1 3.2316 7.2453 1.1610 34 1 0.9866 6.6535 0.3404 35 1 0.2342 4.3096 0.3952 36 1 4.0143 1.9451 0.7670 37 1 3.9614 0.4392 -0.2002 38 1 4.7130 2.9404 -1.2400 39 1 4.0357 1.6111 -2.2372 40 1 -0.5454 4.8292 -2.7851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310444724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = -29.700731 kcal Electronic energy + Delta-G solvation = -20911.147863 eV Core-core repulsion = 18076.349704 eV Total energy + Delta-G solvation = -2834.798159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67432 -37.55711 -33.79984 -31.99643 -31.59424 -30.81243 -30.04747 -27.99387 -26.09218 -24.17431 -22.20019 -21.66193 -20.77945 -20.08989 -18.78578 -16.49985 -16.14553 -15.21706 -14.70271 -14.59786 -14.41451 -13.92786 -13.77683 -13.07291 -12.83918 -12.52361 -12.41689 -12.24818 -11.96183 -11.70340 -11.58120 -11.36966 -10.91255 -10.84177 -10.57462 -10.51563 -10.37319 -10.26770 -10.11030 -9.93776 -9.64238 -9.40340 -8.92541 -8.54493 -8.33279 -8.12579 -7.39750 -5.93373 -4.02386 2.07338 2.17663 3.32518 3.40762 3.44599 4.47937 4.51539 5.05024 5.33072 5.42903 5.45165 5.54816 5.61182 5.68550 5.76664 5.81468 5.86334 5.97198 6.06898 6.11641 6.19613 6.30408 6.34507 6.40226 6.44115 6.50953 6.64913 6.74962 6.79657 6.82528 6.91224 6.94350 6.99725 7.04940 7.13823 7.30235 7.44205 7.72825 7.76361 7.98944 8.39257 8.72558 9.09313 9.65722 11.13438 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.010428 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.177201 B = 2684.455140 C = 3608.451304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.101 3.899 4 C -0.090 4.090 5 C -0.070 4.070 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.132 4.132 9 C -0.112 4.112 10 C -0.060 4.060 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.203 3.797 14 H 0.049 0.951 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.082 3.918 18 N -0.856 5.856 19 Si 0.884 3.116 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 O -0.337 6.337 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -2.444 9.054 9.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C 0.060 3.940 4 C -0.128 4.128 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.130 4.130 10 C -0.078 4.078 11 C -0.189 4.189 12 C -0.186 4.186 13 C 0.148 3.852 14 H 0.067 0.933 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.124 4.124 18 N -0.493 5.493 19 Si 0.712 3.288 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 O -0.256 6.256 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.681 -2.394 8.982 9.675 hybrid contribution 0.154 0.294 -1.074 1.125 sum 2.836 -2.100 7.908 8.659 Atomic orbital electron populations 1.21697 0.95740 0.99829 1.02982 1.21586 0.96584 0.95583 1.00829 1.21843 0.91932 0.91555 0.88675 1.21129 1.01511 0.92178 0.97937 1.19708 0.94133 0.95294 0.97899 1.20882 0.95789 0.95796 1.01965 1.20867 0.99043 0.93322 1.01960 1.20969 0.94791 0.98600 1.00603 1.21028 0.96088 0.96871 0.99034 1.21040 1.00484 0.91844 0.94441 1.23098 0.96529 0.99813 0.99474 1.23173 1.01126 0.98728 0.95533 1.20946 0.80602 0.88266 0.95406 0.93344 1.21052 1.03874 1.38126 0.93514 0.92375 1.24958 0.95879 0.94731 0.96792 1.70021 1.07033 1.39369 1.32830 0.86687 0.78098 0.78004 0.86022 1.19899 1.21050 1.21106 1.89244 1.41381 1.53539 1.41421 0.94208 0.93062 0.91313 0.91969 0.92643 0.90750 0.92048 0.87165 0.87310 0.87309 0.86895 0.85373 0.91537 0.92593 0.92920 0.92413 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.51 37.16 0.35 -2.05 16 2 C -0.11 -1.83 4.99 -26.73 -0.13 -1.96 16 3 C 0.10 1.96 0.80 -90.04 -0.07 1.89 16 4 C -0.09 -1.59 4.39 -27.89 -0.12 -1.72 16 5 C -0.07 -1.33 3.06 -104.63 -0.32 -1.65 16 6 C -0.13 -2.17 8.26 -39.58 -0.33 -2.50 16 7 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 8 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 9 C -0.11 -2.15 9.90 -39.58 -0.39 -2.54 16 10 C -0.06 -1.23 7.56 -39.58 -0.30 -1.53 16 11 C -0.15 -2.79 5.79 -25.20 -0.15 -2.94 16 12 C -0.15 -3.21 6.55 -24.72 -0.16 -3.37 16 13 C 0.20 5.12 2.40 -26.83 -0.06 5.05 16 14 H 0.05 1.28 4.52 -51.93 -0.23 1.05 16 15 C -0.53 -14.85 8.83 -34.44 -0.30 -15.15 16 16 H 0.06 1.63 7.78 -52.49 -0.41 1.23 16 17 C 0.08 2.28 5.42 -17.82 -0.10 2.18 16 18 N -0.86 -23.97 12.95 55.43 0.72 -23.25 16 19 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 O -0.34 -8.29 9.12 -35.23 -0.32 -8.61 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.81 6.32 -51.93 -0.33 0.48 16 26 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.33 6.29 -51.93 -0.33 1.00 16 30 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.11 1.67 6.72 -52.48 -0.35 1.31 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 36 H 0.07 1.13 4.82 -51.93 -0.25 0.88 16 37 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -29.09 311.65 -8.87 -37.96 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.06 Total: 4.35 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: -2.88 Total: -31.57 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.72 Total: -23.25 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.32 Total: -8.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.09 -8.87 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.259 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds