Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 C 1.52996 * 109.87266 * 62.91743 * 3 2 1 5 5 C 1.50699 * 109.47489 * 182.19294 * 4 3 2 6 6 C 1.38231 * 120.00269 * 272.58987 * 5 4 3 7 7 C 1.38236 * 120.00218 * 179.74557 * 6 5 4 8 8 C 1.38235 * 119.99729 * 0.52282 * 7 6 5 9 9 C 1.38239 * 120.00118 * 359.74725 * 8 7 6 10 10 C 1.38235 * 119.99680 * 359.97438 * 9 8 7 11 11 C 1.54105 * 109.87832 * 184.07595 * 3 2 1 12 12 C 1.54818 * 104.18640 * 121.45442 * 11 3 2 13 13 C 1.54996 * 102.09033 * 20.88062 * 12 11 3 14 14 H 1.08993 * 110.61714 * 81.47883 * 13 12 11 15 15 C 1.50703 * 110.61384 * 204.47440 * 13 12 11 16 16 H 1.07993 * 120.00091 * 355.52583 * 15 13 12 17 17 C 1.37877 * 119.99717 * 175.52721 * 15 13 12 18 18 N 1.31521 * 120.00115 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00060 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47306 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47261 * 120.00006 * 19 17 15 22 22 H 1.48497 * 109.47491 * 239.99825 * 19 17 15 23 23 O 1.43746 * 109.88202 * 301.90712 * 3 2 1 24 24 H 1.08997 * 109.47331 * 183.49637 * 1 2 3 25 25 H 1.09000 * 109.47159 * 303.50088 * 1 2 3 26 26 H 1.09004 * 109.47088 * 63.49332 * 1 2 3 27 27 H 1.08997 * 109.47270 * 240.00336 * 2 1 3 28 28 H 1.08992 * 109.47356 * 119.99904 * 2 1 3 29 29 H 1.09003 * 109.46716 * 302.19399 * 4 3 2 30 30 H 1.09006 * 109.47335 * 62.19224 * 4 3 2 31 31 H 1.08003 * 119.99694 * 359.97438 * 6 5 4 32 32 H 1.07994 * 120.00163 * 180.29732 * 7 6 5 33 33 H 1.07999 * 120.00026 * 179.77344 * 8 7 6 34 34 H 1.08001 * 120.00317 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.99691 * 179.97438 * 10 9 8 36 36 H 1.08998 * 110.48739 * 240.13141 * 11 3 2 37 37 H 1.08998 * 110.48496 * 2.64675 * 11 3 2 38 38 H 1.08994 * 110.90695 * 139.07946 * 12 11 3 39 39 H 1.09002 * 110.90129 * 262.65085 * 12 11 3 40 40 H 0.97000 * 120.00081 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5957 2.1512 1.2811 5 6 2.0564 3.5857 1.2473 6 6 3.3143 3.9188 1.7136 7 6 3.7389 5.2339 1.6778 8 6 2.9013 6.2174 1.1856 9 6 1.6412 5.8851 0.7245 10 6 1.2189 4.5691 0.7551 11 6 3.5775 1.4547 -0.1030 12 6 3.8653 2.2711 -1.3866 13 6 2.5509 3.0734 -1.5626 14 1 2.5503 3.9545 -0.9211 15 6 2.3576 3.4652 -3.0049 16 1 3.1244 3.2432 -3.7323 17 6 1.2016 4.1071 -3.3959 18 7 0.2680 4.3779 -2.5100 19 14 0.9622 4.5934 -5.1835 20 1 2.1501 4.1795 -5.9725 21 1 -0.2476 3.9210 -5.7216 22 1 0.7932 6.0657 -5.2776 23 8 1.5293 2.1416 -1.1475 24 1 -0.3634 -1.0257 0.0627 25 1 -0.3633 0.5672 0.8569 26 1 -0.3633 0.4587 -0.9197 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5086 2.1203 1.3550 30 1 2.0330 1.6494 2.1443 31 1 3.9669 3.1511 2.1025 32 1 4.7235 5.4935 2.0376 33 1 3.2316 7.2453 1.1610 34 1 0.9866 6.6535 0.3404 35 1 0.2342 4.3096 0.3952 36 1 4.0143 1.9451 0.7670 37 1 3.9614 0.4392 -0.2002 38 1 4.7130 2.9404 -1.2400 39 1 4.0357 1.6111 -2.2372 40 1 -0.5454 4.8292 -2.7851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310444724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = -44.394146 kcal Electronic energy + Delta-G solvation = -20911.785017 eV Core-core repulsion = 18076.349704 eV Total energy + Delta-G solvation = -2835.435313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18937 -39.03916 -35.50677 -33.93426 -32.99892 -32.41164 -31.48796 -29.63958 -27.75780 -25.81974 -23.72591 -23.14478 -22.17297 -21.84657 -20.27459 -18.54599 -17.54124 -16.84892 -16.46217 -16.19243 -15.93310 -15.46626 -15.29782 -14.58213 -14.30886 -14.18826 -13.89182 -13.79504 -13.52203 -13.33105 -13.14697 -12.88901 -12.74143 -12.43207 -12.30888 -12.07415 -11.85082 -11.83525 -11.67596 -11.62077 -11.14715 -10.93040 -10.80723 -10.60046 -9.99365 -9.53345 -8.98503 -8.03406 -6.19602 0.68151 0.77407 1.37263 1.39943 1.49786 2.44178 3.10359 3.17698 3.70474 3.94440 4.05408 4.16916 4.22360 4.30318 4.34230 4.42876 4.44157 4.59552 4.61311 4.71811 4.82631 4.84886 4.93435 4.99511 5.01968 5.09961 5.13207 5.21424 5.28441 5.33964 5.39621 5.44672 5.54763 5.60869 5.71769 5.76390 5.86908 5.96096 6.02751 6.36244 6.37304 6.75128 7.18854 7.51647 9.01339 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.010428 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.177201 B = 2684.455140 C = 3608.451304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.089 3.911 4 C -0.086 4.086 5 C -0.081 4.081 6 C -0.127 4.127 7 C -0.131 4.131 8 C -0.136 4.136 9 C -0.134 4.134 10 C -0.082 4.082 11 C -0.141 4.141 12 C -0.147 4.147 13 C 0.201 3.799 14 H 0.036 0.964 15 C -0.558 4.558 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.874 5.874 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.278 1.278 23 O -0.369 6.369 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -3.371 10.536 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.048 3.952 4 C -0.124 4.124 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.152 4.152 10 C -0.101 4.101 11 C -0.178 4.178 12 C -0.185 4.185 13 C 0.146 3.854 14 H 0.053 0.947 15 C -0.595 4.595 16 H 0.065 0.935 17 C -0.166 4.166 18 N -0.510 5.510 19 Si 0.768 3.232 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.204 1.204 23 O -0.289 6.289 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.565 -3.325 10.468 11.894 hybrid contribution -0.438 0.588 -1.510 1.678 sum 4.127 -2.737 8.958 10.236 Atomic orbital electron populations 1.21636 0.95975 1.01157 1.01012 1.21623 0.96401 0.94140 1.02197 1.22195 0.92795 0.92543 0.87647 1.21119 1.01114 0.91802 0.98324 1.19865 0.94801 0.95384 0.98021 1.21215 0.95163 0.96968 1.01089 1.21316 1.00198 0.92835 1.00515 1.21277 0.93866 1.00353 0.99895 1.21134 0.97432 0.96441 1.00169 1.20850 0.99723 0.93166 0.96332 1.23069 0.95716 1.00752 0.98239 1.23080 0.99581 0.98737 0.97078 1.20749 0.82464 0.88695 0.93499 0.94682 1.21420 1.03930 1.38920 0.95272 0.93487 1.25629 0.95754 0.94857 1.00358 1.70150 1.07109 1.39596 1.34171 0.85782 0.77800 0.77846 0.81759 1.19642 1.21000 1.20395 1.89165 1.42033 1.53869 1.43830 0.91479 0.92588 0.95427 0.92874 0.88792 0.91937 0.88525 0.84224 0.83759 0.84864 0.87599 0.88956 0.89466 0.90235 0.92266 0.93628 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.51 71.98 0.68 -3.86 16 2 C -0.11 -3.35 4.99 30.59 0.15 -3.20 16 3 C 0.09 3.30 0.80 -10.42 -0.01 3.29 16 4 C -0.09 -2.91 4.39 29.85 0.13 -2.78 16 5 C -0.08 -2.97 3.06 -19.87 -0.06 -3.03 16 6 C -0.13 -3.96 8.26 22.27 0.18 -3.78 16 7 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 8 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 9 C -0.13 -5.27 9.90 22.27 0.22 -5.05 16 10 C -0.08 -3.49 7.56 22.27 0.17 -3.32 16 11 C -0.14 -4.76 5.79 31.59 0.18 -4.58 16 12 C -0.15 -6.25 6.55 31.90 0.21 -6.04 16 13 C 0.20 10.31 2.40 30.53 0.07 10.38 16 14 H 0.04 1.90 4.52 -2.39 -0.01 1.89 16 15 C -0.56 -32.20 8.83 25.60 0.23 -31.98 16 16 H 0.05 2.72 7.78 -2.91 -0.02 2.69 16 17 C 0.04 2.14 5.42 84.65 0.46 2.60 16 18 N -0.87 -50.84 12.95 21.45 0.28 -50.56 16 19 Si 0.94 45.08 29.54 68.60 2.03 47.11 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 O -0.37 -18.53 9.12 -148.98 -1.36 -19.89 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.72 6.32 -2.39 -0.02 1.71 16 26 H 0.03 1.09 7.76 -2.39 -0.02 1.07 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.23 6.29 -2.39 -0.01 2.21 16 30 H 0.10 2.54 8.10 -2.38 -0.02 2.52 16 31 H 0.14 3.51 6.72 -2.91 -0.02 3.49 16 32 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 36 H 0.09 2.57 4.82 -2.39 -0.01 2.56 16 37 H 0.08 2.33 7.70 -2.39 -0.02 2.31 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 2.00 8.05 -2.39 -0.02 1.98 16 40 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -65.27 311.65 5.02 -60.25 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 1.01 Total: 22.41 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 3.07 Total: -59.32 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.28 Total: -50.56 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.36 Total: -19.89 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.27 5.02 -60.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.854 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds