Wall clock time and date at job start Mon Mar 30 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 C 1.52998 * 109.82374 * 297.51012 * 3 2 1 5 5 C 1.50705 * 109.46827 * 177.77979 * 4 3 2 6 6 C 1.38231 * 120.00320 * 96.01875 * 5 4 3 7 7 C 1.38235 * 120.00208 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.38237 * 119.99618 * 0.06986 * 8 7 6 10 10 C 1.38233 * 120.00504 * 359.90823 * 9 8 7 11 11 C 1.54377 * 109.83049 * 176.61764 * 3 2 1 12 12 C 1.55305 * 102.25470 * 261.75495 * 11 3 2 13 13 C 1.54938 * 100.94192 * 325.86770 * 12 11 3 14 14 H 1.09006 * 110.31177 * 277.52852 * 13 12 11 15 15 C 1.50702 * 110.30783 * 155.36075 * 13 12 11 16 16 H 1.07993 * 120.00309 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99815 * 180.02562 * 15 13 12 18 18 N 1.31520 * 119.99930 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00048 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46771 * 119.99829 * 19 17 15 22 22 H 1.48497 * 109.47143 * 239.99697 * 19 17 15 23 23 O 1.43240 * 109.90601 * 58.44287 * 3 2 1 24 24 H 1.08997 * 109.47465 * 298.46472 * 1 2 3 25 25 H 1.09004 * 109.46864 * 58.46120 * 1 2 3 26 26 H 1.09003 * 109.47170 * 178.46031 * 1 2 3 27 27 H 1.09002 * 109.47251 * 239.99934 * 2 1 3 28 28 H 1.08997 * 109.46795 * 120.00034 * 2 1 3 29 29 H 1.09000 * 109.47189 * 57.77561 * 4 3 2 30 30 H 1.09001 * 109.46867 * 297.77318 * 4 3 2 31 31 H 1.08004 * 119.99938 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99923 * 179.72108 * 7 6 5 33 33 H 1.07993 * 119.99811 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.99722 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.00208 * 180.02562 * 10 9 8 36 36 H 1.09002 * 110.84855 * 19.94872 * 11 3 2 37 37 H 1.09004 * 110.84696 * 143.35972 * 11 3 2 38 38 H 1.08997 * 111.12309 * 83.78806 * 12 11 3 39 39 H 1.09004 * 111.12583 * 207.94627 * 12 11 3 40 40 H 0.96998 * 119.99689 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5862 2.1533 -1.2766 5 6 2.0461 3.5881 -1.2432 6 6 3.2200 3.9525 -1.8755 7 6 3.6416 5.2687 -1.8453 8 6 2.8889 6.2205 -1.1832 9 6 1.7154 5.8558 -0.5501 10 6 1.2936 4.5397 -0.5806 11 6 3.5814 1.4530 0.0857 12 6 3.8257 1.7024 1.5990 13 6 2.6305 2.6269 1.9414 14 1 2.8607 3.6580 1.6731 15 6 2.2968 2.5289 3.4078 16 1 2.8696 1.8759 4.0495 17 6 1.2595 3.2722 3.9299 18 7 0.5615 4.0670 3.1483 19 14 0.8454 3.1502 5.7473 20 1 1.7731 2.1941 6.4033 21 1 0.9861 4.4875 6.3778 22 1 -0.5518 2.6728 5.9057 23 8 1.5380 2.1373 1.1477 24 1 -0.3634 0.4898 0.9034 25 1 -0.3633 0.5376 -0.8759 26 1 -0.3634 -1.0273 -0.0276 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4987 2.1217 -1.3430 30 1 2.0179 1.6535 -2.1437 31 1 3.8079 3.2090 -2.3932 32 1 4.5611 5.5526 -2.3356 33 1 3.2185 7.2486 -1.1593 34 1 1.1275 6.5994 -0.0324 35 1 0.3766 4.2550 -0.0863 36 1 3.9935 0.4915 -0.2206 37 1 3.9978 2.2609 -0.5160 38 1 3.7765 0.7713 2.1635 39 1 4.7757 2.2105 1.7650 40 1 -0.1680 4.5902 3.5157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310444726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:05 Heat of formation + Delta-G solvation = -36.197058 kcal Electronic energy + Delta-G solvation = -20636.110273 eV Core-core repulsion = 17801.030412 eV Total energy + Delta-G solvation = -2835.079861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48621 -37.80225 -33.85689 -32.03459 -31.57427 -30.87480 -30.17422 -28.01978 -26.12621 -24.06718 -22.23466 -21.84475 -20.85265 -20.23723 -18.70624 -16.46263 -16.23327 -15.21752 -14.87683 -14.58113 -14.45381 -13.98977 -13.81096 -13.22460 -12.84891 -12.58693 -12.38290 -12.18344 -12.01004 -11.76958 -11.62344 -11.32511 -10.99849 -10.89256 -10.60875 -10.53236 -10.44918 -10.34205 -10.17580 -10.05856 -9.74395 -9.45649 -8.96881 -8.52768 -8.24564 -8.14905 -7.65140 -5.95323 -4.06410 1.96657 2.06059 3.31477 3.39726 3.43317 4.40871 4.46270 4.97893 5.28893 5.37591 5.44507 5.51971 5.54787 5.61698 5.71790 5.73592 5.85003 5.92916 6.07729 6.09612 6.13257 6.27031 6.30788 6.34564 6.44242 6.46081 6.61680 6.66285 6.70796 6.76413 6.85901 6.90535 6.98118 7.04042 7.04501 7.20438 7.35960 7.66517 7.71394 7.95710 8.36802 8.75189 9.12042 9.63460 11.11354 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.008984 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.009244 B = 3115.966370 C = 3951.725493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.107 3.893 4 C -0.084 4.084 5 C -0.069 4.069 6 C -0.127 4.127 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.115 4.115 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.147 4.147 13 C 0.217 3.783 14 H 0.029 0.971 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.081 3.919 18 N -0.858 5.858 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 O -0.340 6.340 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -1.539 -9.967 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.066 3.934 4 C -0.122 4.122 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.133 4.133 10 C -0.087 4.087 11 C -0.191 4.191 12 C -0.185 4.185 13 C 0.162 3.838 14 H 0.046 0.954 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.125 4.125 18 N -0.495 5.495 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 O -0.260 6.260 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.529 -1.380 -9.925 10.334 hybrid contribution 0.070 -0.063 1.059 1.063 sum 2.599 -1.443 -8.866 9.351 Atomic orbital electron populations 1.21682 0.95829 0.99908 1.02753 1.21743 0.96610 0.96348 1.00764 1.21774 0.91899 0.91193 0.88521 1.21006 1.01495 0.91871 0.97783 1.19754 0.94712 0.95382 0.97010 1.20911 0.96630 0.95808 1.01155 1.20907 0.99609 0.93519 1.01160 1.20995 0.95884 0.98835 0.99383 1.21112 0.96628 0.96797 0.98758 1.21135 1.00445 0.91957 0.95141 1.23252 0.96401 1.00970 0.98489 1.23293 1.00615 1.01045 0.93572 1.20426 0.81240 0.91843 0.90296 0.95370 1.21156 1.17227 1.26288 0.92182 0.92326 1.25003 0.95735 0.94500 0.97224 1.70034 1.19511 1.25457 1.34489 0.86671 0.78317 0.77774 0.85954 1.19821 1.21068 1.20980 1.88798 1.32573 1.71736 1.32854 0.91164 0.93313 0.94245 0.92968 0.91891 0.90712 0.91871 0.87108 0.87179 0.87173 0.86679 0.85185 0.92357 0.91016 0.92034 0.92532 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.48 37.16 0.35 -2.07 16 2 C -0.12 -2.01 5.05 -26.73 -0.14 -2.14 16 3 C 0.11 2.05 0.62 -89.90 -0.06 2.00 16 4 C -0.08 -1.44 4.45 -27.88 -0.12 -1.57 16 5 C -0.07 -1.25 4.41 -104.62 -0.46 -1.71 16 6 C -0.13 -2.07 7.92 -39.58 -0.31 -2.38 16 7 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 8 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 9 C -0.11 -2.11 10.05 -39.58 -0.40 -2.51 16 10 C -0.07 -1.36 8.84 -39.58 -0.35 -1.71 16 11 C -0.15 -2.81 5.89 -24.79 -0.15 -2.95 16 12 C -0.15 -3.14 6.53 -24.49 -0.16 -3.30 16 13 C 0.22 5.52 3.18 -26.86 -0.09 5.43 16 14 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 15 C -0.53 -14.84 8.79 -34.44 -0.30 -15.14 16 16 H 0.06 1.62 7.75 -52.49 -0.41 1.22 16 17 C 0.08 2.26 5.43 -17.82 -0.10 2.17 16 18 N -0.86 -24.54 13.05 55.43 0.72 -23.82 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 O -0.34 -8.23 8.26 -35.23 -0.29 -8.52 16 24 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 25 H 0.05 0.76 6.40 -51.93 -0.33 0.42 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 30 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.11 1.57 7.76 -52.48 -0.41 1.16 16 32 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 35 H 0.13 2.85 8.05 -52.49 -0.42 2.43 16 36 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 37 H 0.07 1.27 5.17 -51.93 -0.27 1.01 16 38 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -29.15 319.13 -9.17 -38.32 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.32 Total: 3.76 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -3.07 Total: -30.95 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.72 Total: -23.82 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.29 Total: -8.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.15 -9.17 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.127 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds