Wall clock time and date at job start Mon Mar 30 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 C 1.52998 * 109.82374 * 297.51012 * 3 2 1 5 5 C 1.50705 * 109.46827 * 177.77979 * 4 3 2 6 6 C 1.38231 * 120.00320 * 96.01875 * 5 4 3 7 7 C 1.38235 * 120.00208 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.38237 * 119.99618 * 0.06986 * 8 7 6 10 10 C 1.38233 * 120.00504 * 359.90823 * 9 8 7 11 11 C 1.54377 * 109.83049 * 176.61764 * 3 2 1 12 12 C 1.55305 * 102.25470 * 261.75495 * 11 3 2 13 13 C 1.54938 * 100.94192 * 325.86770 * 12 11 3 14 14 H 1.09006 * 110.31177 * 277.52852 * 13 12 11 15 15 C 1.50702 * 110.30783 * 155.36075 * 13 12 11 16 16 H 1.07993 * 120.00309 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99815 * 180.02562 * 15 13 12 18 18 N 1.31520 * 119.99930 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00048 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46771 * 119.99829 * 19 17 15 22 22 H 1.48497 * 109.47143 * 239.99697 * 19 17 15 23 23 O 1.43240 * 109.90601 * 58.44287 * 3 2 1 24 24 H 1.08997 * 109.47465 * 298.46472 * 1 2 3 25 25 H 1.09004 * 109.46864 * 58.46120 * 1 2 3 26 26 H 1.09003 * 109.47170 * 178.46031 * 1 2 3 27 27 H 1.09002 * 109.47251 * 239.99934 * 2 1 3 28 28 H 1.08997 * 109.46795 * 120.00034 * 2 1 3 29 29 H 1.09000 * 109.47189 * 57.77561 * 4 3 2 30 30 H 1.09001 * 109.46867 * 297.77318 * 4 3 2 31 31 H 1.08004 * 119.99938 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99923 * 179.72108 * 7 6 5 33 33 H 1.07993 * 119.99811 * 179.97438 * 8 7 6 34 34 H 1.08004 * 119.99722 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.00208 * 180.02562 * 10 9 8 36 36 H 1.09002 * 110.84855 * 19.94872 * 11 3 2 37 37 H 1.09004 * 110.84696 * 143.35972 * 11 3 2 38 38 H 1.08997 * 111.12309 * 83.78806 * 12 11 3 39 39 H 1.09004 * 111.12583 * 207.94627 * 12 11 3 40 40 H 0.96998 * 119.99689 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5862 2.1533 -1.2766 5 6 2.0461 3.5881 -1.2432 6 6 3.2200 3.9525 -1.8755 7 6 3.6416 5.2687 -1.8453 8 6 2.8889 6.2205 -1.1832 9 6 1.7154 5.8558 -0.5501 10 6 1.2936 4.5397 -0.5806 11 6 3.5814 1.4530 0.0857 12 6 3.8257 1.7024 1.5990 13 6 2.6305 2.6269 1.9414 14 1 2.8607 3.6580 1.6731 15 6 2.2968 2.5289 3.4078 16 1 2.8696 1.8759 4.0495 17 6 1.2595 3.2722 3.9299 18 7 0.5615 4.0670 3.1483 19 14 0.8454 3.1502 5.7473 20 1 1.7731 2.1941 6.4033 21 1 0.9861 4.4875 6.3778 22 1 -0.5518 2.6728 5.9057 23 8 1.5380 2.1373 1.1477 24 1 -0.3634 0.4898 0.9034 25 1 -0.3633 0.5376 -0.8759 26 1 -0.3634 -1.0273 -0.0276 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4987 2.1217 -1.3430 30 1 2.0179 1.6535 -2.1437 31 1 3.8079 3.2090 -2.3932 32 1 4.5611 5.5526 -2.3356 33 1 3.2185 7.2486 -1.1593 34 1 1.1275 6.5994 -0.0324 35 1 0.3766 4.2550 -0.0863 36 1 3.9935 0.4915 -0.2206 37 1 3.9978 2.2609 -0.5160 38 1 3.7765 0.7713 2.1635 39 1 4.7757 2.2105 1.7650 40 1 -0.1680 4.5902 3.5157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310444726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:05 Heat of formation + Delta-G solvation = -50.758973 kcal Electronic energy + Delta-G solvation = -20636.741725 eV Core-core repulsion = 17801.030412 eV Total energy + Delta-G solvation = -2835.711313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98207 -39.26437 -35.56829 -33.99277 -32.92760 -32.51406 -31.54747 -29.67149 -27.79519 -25.71430 -23.76446 -23.27732 -22.20731 -22.00686 -20.21071 -18.54337 -17.58048 -16.88159 -16.54856 -16.23924 -15.89036 -15.46358 -15.35864 -14.74844 -14.29722 -14.23259 -13.93953 -13.67487 -13.57194 -13.39822 -13.09809 -12.87755 -12.69335 -12.52369 -12.34393 -12.13348 -12.00550 -11.84438 -11.74400 -11.67334 -11.21809 -11.03012 -10.83836 -10.64238 -9.76655 -9.60239 -9.23612 -8.07728 -6.26632 0.62718 0.70837 1.37197 1.39090 1.49993 2.41983 3.03854 3.12638 3.64310 3.92830 4.01132 4.14671 4.19859 4.26833 4.30372 4.38059 4.44717 4.58450 4.62265 4.67805 4.78775 4.82562 4.91679 4.95121 4.97267 5.03469 5.10127 5.18346 5.22808 5.30754 5.35184 5.41660 5.56593 5.59273 5.68950 5.71756 5.81403 5.86187 5.98651 6.30149 6.32321 6.72278 7.23714 7.48235 8.97917 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.008984 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.009244 B = 3115.966370 C = 3951.725493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.093 3.907 4 C -0.079 4.079 5 C -0.080 4.080 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.096 4.096 11 C -0.141 4.141 12 C -0.145 4.145 13 C 0.220 3.780 14 H -0.012 1.012 15 C -0.556 4.556 16 H 0.054 0.946 17 C 0.032 3.968 18 N -0.886 5.886 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.282 1.282 23 O -0.367 6.367 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.772 -2.739 -11.660 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C 0.053 3.947 4 C -0.117 4.117 5 C -0.080 4.080 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.114 4.114 11 C -0.178 4.178 12 C -0.182 4.182 13 C 0.165 3.835 14 H 0.005 0.995 15 C -0.593 4.593 16 H 0.072 0.928 17 C -0.171 4.171 18 N -0.523 5.523 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.208 1.208 23 O -0.286 6.286 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.414 -2.588 -11.621 12.698 hybrid contribution -0.513 0.334 1.540 1.657 sum 3.901 -2.255 -10.081 11.042 Atomic orbital electron populations 1.21623 0.96014 1.01067 1.01011 1.21757 0.96474 0.95062 1.01923 1.22149 0.92851 0.92100 0.87622 1.20993 1.01183 0.91518 0.97967 1.19904 0.95452 0.95436 0.97225 1.21269 0.95761 0.96995 1.00358 1.21376 1.00369 0.93002 0.99985 1.21315 0.94823 1.00615 0.98570 1.21225 0.98080 0.96312 0.99918 1.20953 1.00102 0.93472 0.96879 1.23223 0.95577 1.03051 0.95985 1.23188 0.99066 0.99851 0.96132 1.20094 0.83253 0.90838 0.89359 0.99454 1.21537 1.17414 1.26309 0.94085 0.92806 1.25763 0.95713 0.94262 1.01375 1.70178 1.19845 1.26128 1.36133 0.85685 0.77946 0.77972 0.81032 1.19124 1.20411 1.20846 1.88727 1.32743 1.72406 1.34765 0.95479 0.92329 0.91741 0.89015 0.93299 0.91742 0.88213 0.83906 0.83456 0.84569 0.87311 0.89150 0.88996 0.90201 0.92336 0.91851 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.48 71.98 0.68 -3.90 16 2 C -0.11 -3.69 5.05 30.59 0.15 -3.53 16 3 C 0.09 3.45 0.62 -10.33 -0.01 3.45 16 4 C -0.08 -2.60 4.45 29.85 0.13 -2.47 16 5 C -0.08 -2.86 4.41 -19.86 -0.09 -2.95 16 6 C -0.13 -3.74 7.92 22.27 0.18 -3.56 16 7 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 8 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 9 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 10 C -0.10 -4.01 8.84 22.27 0.20 -3.81 16 11 C -0.14 -4.77 5.89 31.85 0.19 -4.58 16 12 C -0.14 -6.07 6.53 32.05 0.21 -5.86 16 13 C 0.22 11.55 3.18 30.51 0.10 11.64 16 14 H -0.01 -0.72 8.07 -2.38 -0.02 -0.74 16 15 C -0.56 -32.10 8.79 25.60 0.23 -31.88 16 16 H 0.05 3.06 7.75 -2.91 -0.02 3.04 16 17 C 0.03 1.83 5.43 84.65 0.46 2.29 16 18 N -0.89 -53.16 13.05 21.45 0.28 -52.88 16 19 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 O -0.37 -18.31 8.26 -148.98 -1.23 -19.54 16 24 H 0.03 1.09 7.71 -2.39 -0.02 1.07 16 25 H 0.06 1.77 6.40 -2.38 -0.02 1.75 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.22 6.37 -2.39 -0.02 2.20 16 30 H 0.10 2.52 8.04 -2.39 -0.02 2.50 16 31 H 0.14 3.30 7.76 -2.91 -0.02 3.28 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.11 4.10 8.06 -2.91 -0.02 4.07 16 35 H 0.09 4.39 8.05 -2.91 -0.02 4.37 16 36 H 0.09 2.51 7.82 -2.39 -0.02 2.49 16 37 H 0.08 2.56 5.17 -2.39 -0.01 2.55 16 38 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 39 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -66.88 319.13 5.17 -61.71 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.00 Total: 21.21 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 3.10 Total: -57.67 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.28 Total: -52.88 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.23 Total: -19.54 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.88 5.17 -61.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.950 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds