Wall clock time and date at job start Mon Mar 30 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.52998 * 109.82300 * 298.55795 * 3 2 1 5 5 C 1.50700 * 109.47053 * 180.56097 * 4 3 2 6 6 C 1.38238 * 119.99667 * 96.16726 * 5 4 3 7 7 C 1.38234 * 120.00063 * 180.02562 * 6 5 4 8 8 C 1.38238 * 119.99613 * 0.25287 * 7 6 5 9 9 C 1.38230 * 120.00260 * 359.49008 * 8 7 6 10 10 C 1.38234 * 119.99930 * 0.50993 * 9 8 7 11 11 C 1.54383 * 109.90622 * 177.62852 * 3 2 1 12 12 C 1.55308 * 102.25291 * 219.08618 * 11 3 2 13 13 C 1.54945 * 100.94029 * 34.13359 * 12 11 3 14 14 H 1.08997 * 110.31551 * 82.47021 * 13 12 11 15 15 C 1.50706 * 110.39094 * 204.59969 * 13 12 11 16 16 H 1.07995 * 120.00232 * 357.21189 * 15 13 12 17 17 C 1.37877 * 119.99945 * 177.21270 * 15 13 12 18 18 N 1.31519 * 119.99888 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99976 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47204 * 90.00299 * 19 17 15 21 21 H 1.48500 * 109.47123 * 210.00005 * 19 17 15 22 22 H 1.48492 * 109.47155 * 329.99885 * 19 17 15 23 23 O 1.43236 * 109.83210 * 59.44532 * 3 2 1 24 24 H 1.08991 * 109.47107 * 177.19714 * 1 2 3 25 25 H 1.09004 * 109.46608 * 297.20093 * 1 2 3 26 26 H 1.08998 * 109.47053 * 57.19479 * 1 2 3 27 27 H 1.08998 * 109.46684 * 239.99928 * 2 1 3 28 28 H 1.09005 * 109.47213 * 119.99997 * 2 1 3 29 29 H 1.09008 * 109.46976 * 60.56272 * 4 3 2 30 30 H 1.08997 * 109.47561 * 300.56719 * 4 3 2 31 31 H 1.08002 * 120.00245 * 359.97438 * 6 5 4 32 32 H 1.07994 * 119.99951 * 179.97438 * 7 6 5 33 33 H 1.08002 * 119.99259 * 179.72753 * 8 7 6 34 34 H 1.08002 * 120.00071 * 180.23158 * 9 8 7 35 35 H 1.07997 * 120.00026 * 179.72207 * 10 9 8 36 36 H 1.09001 * 110.84622 * 337.27438 * 11 3 2 37 37 H 1.08997 * 110.84784 * 100.89262 * 11 3 2 38 38 H 1.08989 * 111.12260 * 276.21360 * 12 11 3 39 39 H 1.08994 * 111.16238 * 152.06292 * 12 11 3 40 40 H 0.96999 * 119.99843 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5643 2.1610 -1.2642 5 6 2.0824 3.5762 -1.2627 6 6 3.2421 3.8883 -1.9473 7 6 3.7176 5.1863 -1.9455 8 6 3.0362 6.1710 -1.2549 9 6 1.8737 5.8600 -0.5748 10 6 1.3982 4.5620 -0.5765 11 6 3.5827 1.4546 0.0601 12 6 3.8661 2.6482 1.0124 13 6 2.6602 2.5453 1.9798 14 1 2.8580 1.8035 2.7535 15 6 2.3717 3.8865 2.6038 16 1 3.0058 4.7324 2.3831 17 6 1.2982 4.0335 3.4565 18 7 0.5263 3.0032 3.7256 19 14 0.9410 5.6956 4.2304 20 1 0.0281 6.4664 3.3486 21 1 0.2992 5.4973 5.5548 22 1 2.2116 6.4445 4.4033 23 8 1.5563 2.1290 1.1603 24 1 -0.3633 -1.0264 -0.0502 25 1 -0.3633 0.4698 0.9141 26 1 -0.3633 0.5568 -0.8638 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.4746 2.1730 -1.2870 30 1 1.9403 1.6373 -2.1431 31 1 3.7771 3.1180 -2.4828 32 1 4.6238 5.4301 -2.4800 33 1 3.4102 7.1842 -1.2500 34 1 1.3394 6.6301 -0.0383 35 1 0.4923 4.3181 -0.0415 36 1 3.9618 0.5236 0.4816 37 1 4.0079 1.6363 -0.9270 38 1 3.8556 3.5939 0.4707 39 1 4.8083 2.5129 1.5433 40 1 -0.2291 3.1067 4.3252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310444729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:08 Heat of formation + Delta-G solvation = -33.705941 kcal Electronic energy + Delta-G solvation = -20891.977950 eV Core-core repulsion = 18057.006113 eV Total energy + Delta-G solvation = -2834.971838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58274 -37.69657 -33.86198 -32.01265 -31.66047 -30.73845 -30.12695 -28.01629 -26.08689 -24.18873 -22.11636 -21.88219 -20.87153 -20.13356 -18.64106 -16.45423 -16.19509 -15.52601 -14.99173 -14.49811 -14.44190 -13.87044 -13.44222 -13.24707 -12.82883 -12.67410 -12.40389 -12.11873 -11.96524 -11.85220 -11.64492 -11.39640 -10.99890 -10.86553 -10.56138 -10.53919 -10.38832 -10.33305 -10.11430 -10.03637 -9.67273 -9.57645 -8.96920 -8.49657 -8.23442 -8.02416 -7.69822 -5.93223 -4.03047 1.99894 2.09300 3.32195 3.39492 3.42445 4.43667 4.47259 4.98729 5.30264 5.39317 5.42117 5.52300 5.57656 5.62870 5.73477 5.78068 5.83976 5.92044 6.07388 6.09842 6.14785 6.28665 6.32288 6.35561 6.43743 6.47547 6.62803 6.71751 6.73210 6.76884 6.85811 6.91959 7.01392 7.03972 7.07126 7.20942 7.38503 7.67937 7.71561 7.97253 8.38167 8.75144 9.14193 9.65761 11.14023 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.011250 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.218802 B = 2488.195431 C = 3615.590345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.106 3.894 4 C -0.081 4.081 5 C -0.063 4.063 6 C -0.124 4.124 7 C -0.134 4.134 8 C -0.132 4.132 9 C -0.116 4.116 10 C -0.064 4.064 11 C -0.147 4.147 12 C -0.149 4.149 13 C 0.215 3.785 14 H 0.020 0.980 15 C -0.517 4.517 16 H 0.059 0.941 17 C 0.080 3.920 18 N -0.864 5.864 19 Si 0.880 3.120 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.274 1.274 23 O -0.337 6.337 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -0.949 -10.422 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.065 3.935 4 C -0.118 4.118 5 C -0.063 4.063 6 C -0.142 4.142 7 C -0.152 4.152 8 C -0.150 4.150 9 C -0.134 4.134 10 C -0.082 4.082 11 C -0.184 4.184 12 C -0.186 4.186 13 C 0.160 3.840 14 H 0.037 0.963 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.125 4.125 18 N -0.501 5.501 19 Si 0.708 3.292 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 O -0.257 6.257 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.689 -0.984 -10.260 10.652 hybrid contribution 0.095 0.849 0.536 1.008 sum 2.784 -0.135 -9.724 10.115 Atomic orbital electron populations 1.21691 0.95745 0.99868 1.02919 1.21799 0.96748 0.96524 1.00674 1.21814 0.91946 0.90918 0.88813 1.20950 1.01194 0.92185 0.97488 1.19674 0.94852 0.95221 0.96588 1.20877 0.96486 0.96004 1.00852 1.20877 0.99794 0.93486 1.01063 1.20955 0.96218 0.98701 0.99133 1.21059 0.96535 0.97007 0.98820 1.21010 1.00250 0.91774 0.95117 1.23133 0.96204 0.99191 0.99908 1.23393 0.99975 0.97444 0.97837 1.20420 0.81159 0.94701 0.87709 0.96257 1.21009 1.13138 0.95236 1.26043 0.92313 1.24990 0.95951 0.95895 0.95670 1.70038 1.16115 1.29290 1.34610 0.86799 0.78528 0.85137 0.78750 1.20567 1.21349 1.19912 1.88821 1.32463 1.73411 1.30977 0.94295 0.90988 0.93312 0.92960 0.92107 0.90734 0.91894 0.87288 0.87292 0.87279 0.86969 0.85721 0.92216 0.92000 0.90778 0.92974 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.49 37.16 0.35 -2.08 16 2 C -0.12 -2.04 5.08 -26.73 -0.14 -2.18 16 3 C 0.11 2.02 0.74 -89.90 -0.07 1.95 16 4 C -0.08 -1.38 4.23 -27.88 -0.12 -1.50 16 5 C -0.06 -1.14 3.18 -104.62 -0.33 -1.47 16 6 C -0.12 -2.00 7.44 -39.58 -0.29 -2.30 16 7 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 8 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 9 C -0.12 -2.12 10.05 -39.59 -0.40 -2.52 16 10 C -0.06 -1.25 8.90 -39.58 -0.35 -1.60 16 11 C -0.15 -2.66 5.56 -24.78 -0.14 -2.79 16 12 C -0.15 -3.14 5.95 -24.48 -0.15 -3.29 16 13 C 0.22 5.43 3.26 -26.85 -0.09 5.34 16 14 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.52 -14.05 8.78 -34.44 -0.30 -14.35 16 16 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 17 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 18 N -0.86 -25.09 12.93 55.43 0.72 -24.38 16 19 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 O -0.34 -8.13 8.27 -35.23 -0.29 -8.42 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.44 7.77 -51.93 -0.40 1.04 16 26 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.10 8.13 -51.93 -0.42 0.67 16 29 H 0.07 1.29 6.45 -51.92 -0.33 0.96 16 30 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 31 H 0.11 1.54 7.52 -52.49 -0.39 1.15 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.12 2.70 8.05 -52.49 -0.42 2.28 16 36 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 37 H 0.06 1.00 6.39 -51.93 -0.33 0.66 16 38 H 0.07 1.61 5.79 -51.94 -0.30 1.31 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -28.94 315.39 -9.02 -37.96 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.27 Total: 3.54 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -2.91 Total: -29.70 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.72 Total: -24.38 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.29 Total: -8.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.94 -9.02 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310444729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.254 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds