Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38237 * 119.99747 * 59.72563 * 4 2 1 6 6 C 1.38240 * 119.99788 * 179.81066 * 5 4 2 7 7 C 1.38236 * 119.99657 * 0.39831 * 6 5 4 8 8 C 1.50702 * 119.99749 * 179.83625 * 7 6 5 9 9 H 1.08999 * 110.33080 * 205.72806 * 8 7 6 10 10 C 1.54475 * 110.37619 * 83.47084 * 8 7 6 11 11 C 1.54504 * 104.06556 * 217.19301 * 10 8 7 12 12 C 1.54483 * 104.06329 * 359.97438 * 11 10 8 13 13 H 1.09004 * 110.37163 * 265.03818 * 12 11 10 14 14 C 1.50694 * 110.37092 * 142.81138 * 12 11 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99834 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99518 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 119.99844 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.46917 * 89.99975 * 18 16 14 20 20 H 1.48504 * 109.46954 * 209.99494 * 18 16 14 21 21 H 1.48488 * 109.47313 * 330.00013 * 18 16 14 22 22 O 1.44425 * 110.37196 * 327.97256 * 8 7 6 23 23 C 1.38230 * 120.00403 * 359.85459 * 7 6 5 24 24 C 1.38232 * 120.00112 * 240.00114 * 4 2 1 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.08003 * 120.00234 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.99993 * 180.23158 * 6 5 4 34 34 H 1.09003 * 110.51041 * 335.84028 * 10 8 7 35 35 H 1.08999 * 110.50979 * 98.54434 * 10 8 7 36 36 H 1.08997 * 110.51177 * 118.64386 * 11 10 8 37 37 H 1.09004 * 110.51087 * 241.35348 * 11 10 8 38 38 H 0.97002 * 119.99469 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.00473 * 179.97438 * 23 7 6 40 40 H 1.08005 * 119.99991 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6936 -0.2413 -2.4860 6 6 2.1576 -0.8906 -3.6148 7 6 2.9535 -2.0138 -3.4880 8 6 3.4562 -2.7238 -4.7185 9 1 3.6553 -3.7721 -4.4961 10 6 4.7318 -2.0357 -5.2530 11 6 4.5916 -2.1260 -6.7890 12 6 3.2481 -2.8585 -7.0009 13 1 3.4154 -3.9276 -7.1324 14 6 2.5238 -2.2912 -8.1944 15 1 2.9652 -1.4843 -8.7606 16 6 1.2980 -2.8029 -8.5643 17 7 0.6658 -2.3074 -9.6056 18 14 0.5349 -4.1989 -7.5854 19 1 -0.3057 -3.6386 -6.4971 20 1 -0.3068 -5.0304 -8.4828 21 1 1.6105 -5.0375 -6.9982 22 8 2.4961 -2.6111 -5.7915 23 6 3.2878 -2.4859 -2.2325 24 6 2.8270 -1.8343 -1.1038 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.0694 0.6345 -2.5850 33 1 1.8961 -0.5220 -4.5956 34 1 4.7666 -0.9943 -4.9332 35 1 5.6219 -2.5688 -4.9188 36 1 4.5570 -1.1291 -7.2286 37 1 5.4123 -2.7036 -7.2142 38 1 -0.1968 -2.6672 -9.8655 39 1 3.9092 -3.3636 -2.1335 40 1 3.0883 -2.2031 -0.1229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310567300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = -40.644160 kcal Electronic energy + Delta-G solvation = -19404.037298 eV Core-core repulsion = 16568.764597 eV Total energy + Delta-G solvation = -2835.272702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68567 -38.18381 -35.35577 -32.64204 -31.24016 -30.75092 -30.54307 -27.93229 -27.24113 -24.77500 -22.85046 -22.40638 -20.82523 -20.05848 -19.62204 -17.17913 -16.26329 -15.74242 -15.16495 -15.00767 -14.44079 -14.11969 -13.74615 -13.60208 -13.54135 -13.06023 -12.95697 -12.66322 -12.54907 -12.44089 -12.15500 -11.67390 -11.32036 -11.21673 -10.97129 -10.91126 -10.77399 -10.54747 -10.40091 -10.29332 -9.81349 -9.66079 -9.48524 -8.65253 -8.64252 -8.54448 -8.19874 -6.12558 -4.21254 1.55867 1.68482 3.40847 3.46189 3.55794 3.96965 4.47522 4.63889 4.71247 4.79595 5.11182 5.17784 5.21980 5.26479 5.37621 5.42618 5.47679 5.50894 5.59634 5.65816 5.68572 5.72744 5.86764 5.89872 6.01073 6.08257 6.13042 6.18169 6.18685 6.27980 6.38382 6.46477 6.60903 6.65283 6.72158 6.83934 7.00422 7.15644 7.27789 7.59132 8.10862 8.42700 8.88391 9.50314 10.97872 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.005356 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.178865 B = 5226.278405 C = 5670.580215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.073 4.073 8 C 0.103 3.897 9 H 0.061 0.939 10 C -0.141 4.141 11 C -0.135 4.135 12 C 0.164 3.836 13 H 0.031 0.969 14 C -0.515 4.515 15 H 0.080 0.920 16 C 0.084 3.916 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.268 1.268 22 O -0.370 6.370 23 C -0.115 4.115 24 C -0.124 4.124 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 2.832 18.702 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.136 4.136 6 C -0.105 4.105 7 C -0.073 4.073 8 C 0.045 3.955 9 H 0.078 0.922 10 C -0.179 4.179 11 C -0.173 4.173 12 C 0.109 3.891 13 H 0.048 0.952 14 C -0.552 4.552 15 H 0.098 0.902 16 C -0.121 4.121 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.193 1.193 22 O -0.291 6.291 23 C -0.133 4.133 24 C -0.142 4.142 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.919 2.876 18.598 19.223 hybrid contribution -0.273 -0.787 0.400 0.924 sum 3.647 2.090 18.998 19.458 Atomic orbital electron populations 1.21863 0.94521 1.02024 1.01778 1.20083 0.95835 0.95907 0.95416 1.21854 1.01161 0.95291 1.01776 1.19780 0.98386 0.96057 0.94471 1.20971 1.00576 1.00227 0.91863 1.21174 0.95591 0.94484 0.99241 1.19868 0.97831 0.95820 0.93786 1.21639 0.89690 0.96621 0.87564 0.92167 1.22916 0.96952 1.00901 0.97147 1.22859 0.98998 1.02022 0.93416 1.21150 0.88659 0.95091 0.84244 0.95171 1.20969 1.04963 1.21136 1.08140 0.90154 1.25063 0.96442 0.96612 0.93985 1.69924 1.15195 1.42035 1.25732 0.86458 0.79429 0.81879 0.79535 1.19886 1.22441 1.19257 1.89386 1.32375 1.91944 1.15363 1.20894 1.00621 0.99988 0.91845 1.20872 0.99263 0.96091 0.97984 0.92676 0.92305 0.92567 0.90861 0.92682 0.92616 0.92335 0.86424 0.84837 0.91437 0.91836 0.91040 0.92204 0.92434 0.86423 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.00 37.16 0.33 -1.08 16 2 C -0.05 -0.55 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.33 9.01 37.16 0.33 -0.99 16 4 C -0.09 -1.14 4.78 -104.62 -0.50 -1.64 16 5 C -0.12 -1.74 8.71 -39.58 -0.34 -2.09 16 6 C -0.09 -1.52 9.37 -39.58 -0.37 -1.90 16 7 C -0.07 -1.26 4.94 -104.62 -0.52 -1.78 16 8 C 0.10 1.97 3.49 -27.11 -0.09 1.88 16 9 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 10 C -0.14 -2.44 6.62 -25.17 -0.17 -2.60 16 11 C -0.14 -2.70 6.62 -25.16 -0.17 -2.87 16 12 C 0.16 3.99 2.50 -27.11 -0.07 3.92 16 13 H 0.03 0.75 7.08 -51.93 -0.37 0.38 16 14 C -0.52 -14.77 9.35 -34.44 -0.32 -15.09 16 15 H 0.08 2.44 7.81 -52.49 -0.41 2.03 16 16 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 17 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 18 Si 0.90 23.34 26.48 -169.99 -4.50 18.84 16 19 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.27 -6.73 6.48 56.52 0.37 -6.37 16 22 O -0.37 -8.89 8.33 -35.23 -0.29 -9.19 16 23 C -0.12 -1.68 9.70 -39.58 -0.38 -2.07 16 24 C -0.12 -1.62 9.67 -39.58 -0.38 -2.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.60 7.37 -51.93 -0.38 0.21 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 32 H 0.12 1.54 7.10 -52.48 -0.37 1.17 16 33 H 0.13 2.59 7.58 -52.49 -0.40 2.19 16 34 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.48 7.71 -51.93 -0.40 1.08 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.22 7.95 -52.48 -0.42 0.81 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -31.06 320.85 -8.72 -39.78 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.50 Total: -0.80 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -3.03 Total: -26.79 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.77 Total: -26.68 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.29 Total: -9.19 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.50 Total: 18.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.06 -8.72 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.864 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds