Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38237 * 119.99747 * 59.72563 * 4 2 1 6 6 C 1.38240 * 119.99788 * 179.81066 * 5 4 2 7 7 C 1.38236 * 119.99657 * 0.39831 * 6 5 4 8 8 C 1.50702 * 119.99749 * 179.83625 * 7 6 5 9 9 H 1.08999 * 110.33080 * 205.72806 * 8 7 6 10 10 C 1.54475 * 110.37619 * 83.47084 * 8 7 6 11 11 C 1.54504 * 104.06556 * 217.19301 * 10 8 7 12 12 C 1.54483 * 104.06329 * 359.97438 * 11 10 8 13 13 H 1.09004 * 110.37163 * 265.03818 * 12 11 10 14 14 C 1.50694 * 110.37092 * 142.81138 * 12 11 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99834 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99518 * 179.97438 * 16 14 12 18 18 Si 1.86798 * 119.99844 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.46917 * 89.99975 * 18 16 14 20 20 H 1.48504 * 109.46954 * 209.99494 * 18 16 14 21 21 H 1.48488 * 109.47313 * 330.00013 * 18 16 14 22 22 O 1.44425 * 110.37196 * 327.97256 * 8 7 6 23 23 C 1.38230 * 120.00403 * 359.85459 * 7 6 5 24 24 C 1.38232 * 120.00112 * 240.00114 * 4 2 1 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 29 29 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 30 30 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 32 32 H 1.08003 * 120.00234 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.99993 * 180.23158 * 6 5 4 34 34 H 1.09003 * 110.51041 * 335.84028 * 10 8 7 35 35 H 1.08999 * 110.50979 * 98.54434 * 10 8 7 36 36 H 1.08997 * 110.51177 * 118.64386 * 11 10 8 37 37 H 1.09004 * 110.51087 * 241.35348 * 11 10 8 38 38 H 0.97002 * 119.99469 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.00473 * 179.97438 * 23 7 6 40 40 H 1.08005 * 119.99991 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6936 -0.2413 -2.4860 6 6 2.1576 -0.8906 -3.6148 7 6 2.9535 -2.0138 -3.4880 8 6 3.4562 -2.7238 -4.7185 9 1 3.6553 -3.7721 -4.4961 10 6 4.7318 -2.0357 -5.2530 11 6 4.5916 -2.1260 -6.7890 12 6 3.2481 -2.8585 -7.0009 13 1 3.4154 -3.9276 -7.1324 14 6 2.5238 -2.2912 -8.1944 15 1 2.9652 -1.4843 -8.7606 16 6 1.2980 -2.8029 -8.5643 17 7 0.6658 -2.3074 -9.6056 18 14 0.5349 -4.1989 -7.5854 19 1 -0.3057 -3.6386 -6.4971 20 1 -0.3068 -5.0304 -8.4828 21 1 1.6105 -5.0375 -6.9982 22 8 2.4961 -2.6111 -5.7915 23 6 3.2878 -2.4859 -2.2325 24 6 2.8270 -1.8343 -1.1038 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.0694 0.6345 -2.5850 33 1 1.8961 -0.5220 -4.5956 34 1 4.7666 -0.9943 -4.9332 35 1 5.6219 -2.5688 -4.9188 36 1 4.5570 -1.1291 -7.2286 37 1 5.4123 -2.7036 -7.2142 38 1 -0.1968 -2.6672 -9.8655 39 1 3.9092 -3.3636 -2.1335 40 1 3.0883 -2.2031 -0.1229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310567300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = -57.606964 kcal Electronic energy + Delta-G solvation = -19404.772861 eV Core-core repulsion = 16568.764597 eV Total energy + Delta-G solvation = -2836.008264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95081 -39.65445 -36.37286 -34.78967 -32.83634 -32.13249 -31.77256 -29.55150 -27.96563 -26.43209 -24.06872 -23.76655 -22.20465 -21.65992 -20.72099 -19.25687 -17.56965 -17.21741 -16.64533 -16.47815 -15.92199 -15.47664 -15.05421 -14.76961 -14.63270 -14.52611 -14.43232 -14.13278 -14.01011 -13.61820 -13.20137 -12.96344 -12.87996 -12.51994 -12.35869 -12.16439 -12.08144 -11.90706 -11.81351 -11.55495 -11.50858 -11.42591 -11.26676 -10.89690 -10.38892 -9.78944 -9.37792 -8.40315 -6.52592 0.41107 0.53516 1.30065 1.37874 1.46567 2.31751 2.74301 2.91088 3.49600 3.73387 3.86782 3.89627 3.98306 4.11365 4.20553 4.23999 4.34732 4.40054 4.47132 4.56766 4.61733 4.69087 4.75172 4.81868 4.94272 4.96495 4.99632 5.01046 5.08716 5.16505 5.22193 5.23755 5.36004 5.37269 5.40074 5.49596 5.57697 5.75392 5.78390 6.13818 6.16527 6.34064 6.63288 7.22566 8.74220 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.005356 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.178865 B = 5226.278405 C = 5670.580215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.096 4.096 8 C 0.096 3.904 9 H 0.076 0.924 10 C -0.128 4.128 11 C -0.133 4.133 12 C 0.162 3.838 13 H 0.032 0.968 14 C -0.525 4.525 15 H 0.045 0.955 16 C 0.031 3.969 17 N -0.936 5.936 18 Si 0.959 3.041 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.252 1.252 22 O -0.399 6.399 23 C -0.112 4.112 24 C -0.119 4.119 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.270 0.730 39 H 0.143 0.857 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 1.652 22.539 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.200 4.200 4 C -0.082 4.082 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.096 4.096 8 C 0.038 3.962 9 H 0.094 0.906 10 C -0.165 4.165 11 C -0.170 4.170 12 C 0.106 3.894 13 H 0.050 0.950 14 C -0.563 4.563 15 H 0.063 0.937 16 C -0.169 4.169 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.175 1.175 22 O -0.320 6.320 23 C -0.130 4.130 24 C -0.137 4.137 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.020 1.697 22.439 23.056 hybrid contribution -0.587 -0.318 -0.723 0.984 sum 4.433 1.379 21.716 22.206 Atomic orbital electron populations 1.21869 0.94252 1.01801 1.02298 1.20166 0.95999 0.96299 0.94564 1.21849 1.01104 0.94749 1.02296 1.20160 0.97334 0.95948 0.94711 1.21068 1.00668 1.00424 0.92018 1.21020 0.97709 0.95986 0.98600 1.19838 0.99257 0.96160 0.94332 1.21936 0.89322 0.98018 0.86922 0.90581 1.22863 0.97743 1.01458 0.94467 1.22789 0.97479 1.00816 0.95955 1.21002 0.90041 0.95199 0.83171 0.95000 1.21274 1.05169 1.19980 1.09836 0.93708 1.25866 0.97058 0.99120 0.94880 1.70038 1.15989 1.43951 1.27618 0.85512 0.78835 0.79306 0.77887 1.20896 1.21284 1.17542 1.89286 1.34129 1.92228 1.16367 1.21155 1.00412 1.00589 0.90868 1.21304 0.97957 0.95335 0.99102 0.90652 0.93384 0.93157 0.88832 0.90775 0.92697 0.93293 0.85770 0.88451 0.91426 0.88030 0.92874 0.89761 0.92150 0.83900 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.00 71.98 0.65 -1.80 16 2 C -0.05 -0.89 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -2.24 9.01 71.98 0.65 -1.59 16 4 C -0.08 -1.92 4.78 -19.87 -0.09 -2.01 16 5 C -0.12 -3.60 8.71 22.27 0.19 -3.40 16 6 C -0.11 -4.11 9.37 22.27 0.21 -3.90 16 7 C -0.10 -3.21 4.94 -19.87 -0.10 -3.31 16 8 C 0.10 3.51 3.49 30.35 0.11 3.62 16 9 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 10 C -0.13 -4.16 6.62 31.61 0.21 -3.95 16 11 C -0.13 -5.25 6.62 31.61 0.21 -5.04 16 12 C 0.16 7.93 2.50 30.35 0.08 8.00 16 13 H 0.03 1.56 7.08 -2.38 -0.02 1.54 16 14 C -0.53 -31.36 9.35 25.60 0.24 -31.12 16 15 H 0.04 2.90 7.81 -2.91 -0.02 2.87 16 16 C 0.03 1.87 5.47 84.66 0.46 2.34 16 17 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 18 Si 0.96 49.02 26.48 68.60 1.82 50.83 16 19 H -0.28 -14.79 7.11 99.48 0.71 -14.08 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.25 -12.06 6.48 99.48 0.64 -11.41 16 22 O -0.40 -19.32 8.33 -148.98 -1.24 -20.56 16 23 C -0.11 -2.91 9.70 22.27 0.22 -2.70 16 24 C -0.12 -2.66 9.67 22.27 0.22 -2.44 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.91 7.37 -2.39 -0.02 0.89 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.28 7.88 -2.39 -0.02 1.26 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.86 7.40 -2.39 -0.02 0.84 16 32 H 0.12 3.29 7.10 -2.91 -0.02 3.27 16 33 H 0.10 4.09 7.58 -2.91 -0.02 4.06 16 34 H 0.07 2.19 7.86 -2.39 -0.02 2.17 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 2.26 7.71 -2.39 -0.02 2.24 16 37 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.15 2.33 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -70.21 320.85 5.01 -65.20 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.93 Total: 12.39 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 3.20 Total: -48.24 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.30 Total: -59.62 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.24 Total: -20.56 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.82 Total: 50.83 kcal Total: -70.21 5.01 -65.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.589 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds