Wall clock time and date at job start Mon Mar 30 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.50699 * 109.46810 * 119.99572 * 2 1 3 5 5 C 1.38242 * 119.99632 * 120.00453 * 4 2 1 6 6 C 1.38233 * 119.99373 * 179.97438 * 5 4 2 7 7 C 1.38226 * 120.00729 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00249 * 180.02562 * 7 6 5 9 9 H 1.08994 * 110.35565 * 24.31298 * 8 7 6 10 10 C 1.54941 * 110.30904 * 262.16328 * 8 7 6 11 11 C 1.55455 * 100.98986 * 204.69021 * 10 8 7 12 12 C 1.54384 * 102.18621 * 34.04255 * 11 10 8 13 13 H 1.08995 * 109.83275 * 98.29472 * 12 11 10 14 14 C 1.50701 * 109.83040 * 219.18540 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.80596 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.09159 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 O 1.43238 * 107.66064 * 338.74153 * 12 11 10 23 23 C 1.38238 * 119.99829 * 0.27357 * 7 6 5 24 24 C 1.38230 * 120.00456 * 300.02153 * 4 2 1 25 25 H 1.08996 * 109.47265 * 299.99883 * 1 2 3 26 26 H 1.09001 * 109.46907 * 60.00437 * 1 2 3 27 27 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47265 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.46810 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47066 * 299.99466 * 3 2 1 31 31 H 1.08999 * 109.47503 * 59.99662 * 3 2 1 32 32 H 1.08001 * 120.00094 * 359.97438 * 5 4 2 33 33 H 1.08010 * 119.99337 * 179.97438 * 6 5 4 34 34 H 1.08997 * 111.12559 * 322.55798 * 10 8 7 35 35 H 1.09000 * 111.12349 * 86.68213 * 10 8 7 36 36 H 1.08994 * 110.83249 * 275.89401 * 11 10 8 37 37 H 1.09004 * 110.92410 * 152.23010 * 11 10 8 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00004 * 179.73238 * 23 7 6 40 40 H 1.08011 * 119.99917 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -1.8343 1.1037 6 6 3.2882 -2.4855 2.2325 7 6 2.9551 -2.0127 3.4879 8 6 3.4584 -2.7223 4.7184 9 1 4.3672 -3.2790 4.4900 10 6 2.3693 -3.6747 5.2731 11 6 2.7889 -3.7664 6.7672 12 6 3.3474 -2.3525 7.0362 13 1 2.5863 -1.7398 7.5191 14 6 4.5659 -2.4434 7.9183 15 1 4.9137 -3.4067 8.2611 16 6 5.2332 -1.2964 8.2924 17 7 4.8098 -0.1234 7.8749 18 14 6.7390 -1.4086 9.3922 19 1 7.0067 -2.8316 9.7213 20 1 7.9121 -0.8344 8.6854 21 1 6.4951 -0.6488 10.6445 22 8 3.7037 -1.7784 5.7731 23 6 2.1561 -0.8917 3.6147 24 6 1.6980 -0.2383 2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.0878 -2.2035 0.1228 33 1 3.9089 -3.3639 2.1334 34 1 1.3761 -3.2374 5.1714 35 1 2.4177 -4.6505 4.7899 36 1 3.5619 -4.5219 6.9071 37 1 1.9264 -3.9700 7.4019 38 1 5.2791 0.6835 8.1384 39 1 1.8922 -0.5248 4.5956 40 1 1.0764 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310567303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:35 Heat of formation + Delta-G solvation = -43.252243 kcal Electronic energy + Delta-G solvation = -19300.713535 eV Core-core repulsion = 16465.327738 eV Total energy + Delta-G solvation = -2835.385797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.51603 -37.91042 -35.22657 -32.58134 -30.93245 -30.55635 -30.34538 -27.49500 -27.17545 -24.67422 -22.77460 -22.30130 -20.56615 -20.15588 -19.55423 -16.60331 -16.32643 -15.53982 -15.16943 -14.64061 -14.48175 -13.97586 -13.62178 -13.55896 -13.40144 -12.96122 -12.72634 -12.46942 -12.25192 -12.12523 -11.81365 -11.69110 -11.20902 -11.12841 -10.90658 -10.86136 -10.57919 -10.50424 -10.33379 -10.28499 -10.07006 -9.78990 -9.18818 -8.52385 -8.51012 -8.17262 -7.76648 -5.95951 -4.09830 1.70652 1.81650 3.31416 3.39430 3.42711 4.10709 4.45204 4.73650 4.84158 4.99957 5.18687 5.31289 5.34665 5.42328 5.46149 5.53920 5.54169 5.56889 5.73916 5.78946 5.80504 5.81106 5.94478 6.01536 6.19526 6.21755 6.24399 6.30979 6.35413 6.42556 6.53186 6.61583 6.70648 6.82215 6.87930 6.95767 7.20656 7.41410 7.66573 7.91143 8.30834 8.62313 9.06902 9.61919 11.10693 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.004652 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.006554 B = 6018.063700 C = 6485.693485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.071 4.071 8 C 0.112 3.888 9 H 0.060 0.940 10 C -0.146 4.146 11 C -0.145 4.145 12 C 0.205 3.795 13 H 0.038 0.962 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.079 3.921 17 N -0.863 5.863 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.350 6.350 23 C -0.087 4.087 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.259 0.741 39 H 0.129 0.871 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 -1.622 -14.211 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.091 4.091 5 C -0.142 4.142 6 C -0.135 4.135 7 C -0.071 4.071 8 C 0.053 3.947 9 H 0.078 0.922 10 C -0.183 4.183 11 C -0.183 4.183 12 C 0.150 3.850 13 H 0.056 0.944 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.127 4.127 17 N -0.499 5.499 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.269 6.269 23 C -0.105 4.105 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.276 -1.216 -14.218 16.018 hybrid contribution 0.893 -0.218 0.651 1.127 sum -6.383 -1.434 -13.567 15.062 Atomic orbital electron populations 1.21852 0.94674 1.01834 1.01666 1.20068 0.95678 0.95937 0.95501 1.21859 1.01346 0.95287 1.01661 1.19735 0.98767 0.96182 0.94386 1.20865 0.99265 0.96170 0.97947 1.20908 1.00480 1.00136 0.91928 1.20124 0.96552 0.96071 0.94345 1.21565 0.95340 0.90037 0.87746 0.92193 1.23260 0.98924 0.98979 0.97176 1.23245 0.99982 1.01157 0.93870 1.20308 0.95047 0.87304 0.82391 0.94400 1.21430 1.13599 0.92969 1.30239 0.92258 1.25051 0.97057 0.95441 0.95111 1.70041 1.39367 0.97515 1.42973 0.86626 0.83260 0.78184 0.80384 1.19708 1.20894 1.20932 1.88809 1.86417 1.37271 1.14434 1.21099 0.95963 0.94518 0.98897 1.20926 1.00883 0.99950 0.91926 0.92393 0.92774 0.92663 0.90934 0.92525 0.92779 0.92342 0.86777 0.86499 0.91522 0.91755 0.91553 0.92183 0.93073 0.85296 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.01 37.16 0.33 -1.05 16 2 C -0.05 -0.58 3.09 -91.77 -0.28 -0.86 16 3 C -0.14 -1.49 9.01 37.16 0.33 -1.16 16 4 C -0.09 -1.26 4.78 -104.62 -0.50 -1.76 16 5 C -0.12 -1.75 9.67 -39.58 -0.38 -2.14 16 6 C -0.12 -1.85 9.70 -39.59 -0.38 -2.23 16 7 C -0.07 -1.31 5.04 -104.63 -0.53 -1.84 16 8 C 0.11 2.33 3.65 -26.86 -0.10 2.23 16 9 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 10 C -0.15 -2.66 6.56 -24.40 -0.16 -2.82 16 11 C -0.14 -3.00 6.54 -24.70 -0.16 -3.16 16 12 C 0.20 5.31 3.35 -27.16 -0.09 5.21 16 13 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.54 -15.41 8.74 -34.44 -0.30 -15.71 16 15 H 0.06 1.63 7.52 -52.49 -0.39 1.24 16 16 C 0.08 2.27 5.41 -17.82 -0.10 2.17 16 17 N -0.86 -25.97 12.93 55.43 0.72 -25.25 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 O -0.35 -9.14 9.37 -35.23 -0.33 -9.47 16 23 C -0.09 -1.59 9.37 -39.58 -0.37 -1.96 16 24 C -0.12 -1.83 8.71 -39.59 -0.34 -2.18 16 25 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 32 H 0.11 1.32 7.95 -52.49 -0.42 0.90 16 33 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.07 1.17 8.05 -51.93 -0.42 0.76 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.36 7.66 -51.93 -0.40 0.97 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.57 7.63 -52.49 -0.40 2.17 16 40 H 0.12 1.57 7.10 -52.48 -0.37 1.20 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.80 325.78 -9.27 -40.07 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.51 Total: 0.39 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -3.03 Total: -27.25 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.72 Total: -25.25 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.33 Total: -9.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.80 -9.27 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.183 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds