Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.50699 * 109.46810 * 119.99572 * 2 1 3 5 5 C 1.38242 * 119.99632 * 120.00453 * 4 2 1 6 6 C 1.38233 * 119.99373 * 179.97438 * 5 4 2 7 7 C 1.38226 * 120.00729 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00249 * 180.02562 * 7 6 5 9 9 H 1.08994 * 110.35565 * 24.31298 * 8 7 6 10 10 C 1.54941 * 110.30904 * 262.16328 * 8 7 6 11 11 C 1.55455 * 100.98986 * 204.69021 * 10 8 7 12 12 C 1.54384 * 102.18621 * 34.04255 * 11 10 8 13 13 H 1.08995 * 109.83275 * 98.29472 * 12 11 10 14 14 C 1.50701 * 109.83040 * 219.18540 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.80596 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.09159 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 O 1.43238 * 107.66064 * 338.74153 * 12 11 10 23 23 C 1.38238 * 119.99829 * 0.27357 * 7 6 5 24 24 C 1.38230 * 120.00456 * 300.02153 * 4 2 1 25 25 H 1.08996 * 109.47265 * 299.99883 * 1 2 3 26 26 H 1.09001 * 109.46907 * 60.00437 * 1 2 3 27 27 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47265 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.46810 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47066 * 299.99466 * 3 2 1 31 31 H 1.08999 * 109.47503 * 59.99662 * 3 2 1 32 32 H 1.08001 * 120.00094 * 359.97438 * 5 4 2 33 33 H 1.08010 * 119.99337 * 179.97438 * 6 5 4 34 34 H 1.08997 * 111.12559 * 322.55798 * 10 8 7 35 35 H 1.09000 * 111.12349 * 86.68213 * 10 8 7 36 36 H 1.08994 * 110.83249 * 275.89401 * 11 10 8 37 37 H 1.09004 * 110.92410 * 152.23010 * 11 10 8 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00004 * 179.73238 * 23 7 6 40 40 H 1.08011 * 119.99917 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -1.8343 1.1037 6 6 3.2882 -2.4855 2.2325 7 6 2.9551 -2.0127 3.4879 8 6 3.4584 -2.7223 4.7184 9 1 4.3672 -3.2790 4.4900 10 6 2.3693 -3.6747 5.2731 11 6 2.7889 -3.7664 6.7672 12 6 3.3474 -2.3525 7.0362 13 1 2.5863 -1.7398 7.5191 14 6 4.5659 -2.4434 7.9183 15 1 4.9137 -3.4067 8.2611 16 6 5.2332 -1.2964 8.2924 17 7 4.8098 -0.1234 7.8749 18 14 6.7390 -1.4086 9.3922 19 1 7.0067 -2.8316 9.7213 20 1 7.9121 -0.8344 8.6854 21 1 6.4951 -0.6488 10.6445 22 8 3.7037 -1.7784 5.7731 23 6 2.1561 -0.8917 3.6147 24 6 1.6980 -0.2383 2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.0878 -2.2035 0.1228 33 1 3.9089 -3.3639 2.1334 34 1 1.3761 -3.2374 5.1714 35 1 2.4177 -4.6505 4.7899 36 1 3.5619 -4.5219 6.9071 37 1 1.9264 -3.9700 7.4019 38 1 5.2791 0.6835 8.1384 39 1 1.8922 -0.5248 4.5956 40 1 1.0764 0.6395 2.5851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310567303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = -59.323932 kcal Electronic energy + Delta-G solvation = -19301.410456 eV Core-core repulsion = 16465.327738 eV Total energy + Delta-G solvation = -2836.082717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85667 -39.50234 -36.32436 -34.65749 -32.66424 -31.91251 -31.72563 -29.18304 -27.94229 -26.47392 -24.08994 -23.67273 -22.05761 -21.86956 -20.70776 -18.63341 -17.78194 -17.09046 -16.56927 -16.41217 -15.77407 -15.49296 -14.93491 -14.77588 -14.49027 -14.34620 -14.17500 -13.83416 -13.73247 -13.60377 -13.20704 -12.88902 -12.81651 -12.44094 -12.35604 -12.26246 -12.06517 -12.04128 -11.87421 -11.56059 -11.45803 -11.40236 -11.09965 -10.69822 -9.91008 -9.75906 -9.29749 -8.13336 -6.35548 0.45654 0.56482 1.38251 1.39238 1.51782 2.39941 2.82733 3.09668 3.59673 3.77234 3.89833 3.91745 3.97394 4.19286 4.23323 4.29531 4.37057 4.52063 4.57582 4.60450 4.67501 4.73516 4.84125 4.84875 4.93795 5.00964 5.03137 5.07794 5.11188 5.18023 5.25767 5.26624 5.38836 5.42517 5.56164 5.62420 5.74271 5.78345 5.87174 6.17323 6.18415 6.59926 7.04709 7.41955 8.93836 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.004652 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.006554 B = 6018.063700 C = 6485.693485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.095 4.095 8 C 0.103 3.897 9 H 0.057 0.943 10 C -0.129 4.129 11 C -0.137 4.137 12 C 0.197 3.803 13 H 0.000 1.000 14 C -0.564 4.564 15 H 0.063 0.937 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.960 3.040 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.276 1.276 22 O -0.385 6.385 23 C -0.112 4.112 24 C -0.121 4.121 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.260 0.740 39 H 0.095 0.905 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -2.779 -16.532 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.137 4.137 6 C -0.136 4.136 7 C -0.095 4.095 8 C 0.045 3.955 9 H 0.075 0.925 10 C -0.167 4.167 11 C -0.174 4.174 12 C 0.141 3.859 13 H 0.018 0.982 14 C -0.601 4.601 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.542 5.542 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.201 1.201 22 O -0.305 6.305 23 C -0.131 4.131 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.220 -2.392 -16.541 18.205 hybrid contribution 0.824 0.172 1.272 1.526 sum -6.395 -2.220 -15.268 16.702 Atomic orbital electron populations 1.21845 0.93655 1.02035 1.02358 1.20159 0.96468 0.95920 0.94431 1.21868 1.00828 0.95147 1.02354 1.20151 0.97500 0.95890 0.94841 1.21283 0.98011 0.95532 0.98875 1.21133 1.00422 1.00821 0.91188 1.20024 0.98090 0.96849 0.94578 1.21780 0.96196 0.90027 0.87523 0.92521 1.23185 0.98122 1.00122 0.95235 1.23124 1.00481 0.97766 0.96062 1.20205 0.93667 0.89598 0.82444 0.98185 1.21868 1.14333 0.93189 1.30743 0.91908 1.25962 1.00340 0.95015 0.96663 1.70199 1.41018 0.98274 1.44693 0.85502 0.78959 0.78717 0.78376 1.18447 1.20789 1.20100 1.88718 1.86768 1.39490 1.15553 1.20957 0.97850 0.95745 0.98507 1.21052 1.00851 1.00103 0.91878 0.93151 0.90722 0.92721 0.88967 0.93350 0.90548 0.93282 0.83253 0.84580 0.91211 0.88214 0.91212 0.90463 0.93118 0.88640 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.01 71.98 0.65 -1.67 16 2 C -0.05 -0.95 3.09 -11.54 -0.04 -0.99 16 3 C -0.14 -2.63 9.01 71.98 0.65 -1.98 16 4 C -0.08 -2.15 4.78 -19.87 -0.09 -2.24 16 5 C -0.12 -3.01 9.67 22.27 0.22 -2.80 16 6 C -0.12 -3.54 9.70 22.27 0.22 -3.32 16 7 C -0.10 -3.58 5.04 -19.87 -0.10 -3.68 16 8 C 0.10 4.36 3.65 30.51 0.11 4.47 16 9 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 10 C -0.13 -4.65 6.56 32.10 0.21 -4.44 16 11 C -0.14 -5.68 6.54 31.91 0.21 -5.47 16 12 C 0.20 10.66 3.35 30.32 0.10 10.76 16 13 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 14 C -0.56 -32.82 8.74 25.60 0.22 -32.60 16 15 H 0.06 3.50 7.52 -2.91 -0.02 3.48 16 16 C 0.02 1.28 5.41 84.65 0.46 1.74 16 17 N -0.90 -56.76 12.93 21.45 0.28 -56.49 16 18 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 O -0.39 -21.20 9.37 -148.98 -1.40 -22.59 16 23 C -0.11 -4.30 9.37 22.27 0.21 -4.10 16 24 C -0.12 -3.72 8.71 22.27 0.19 -3.53 16 25 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.09 1.41 7.88 -2.39 -0.02 1.39 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.97 7.39 -2.39 -0.02 0.96 16 32 H 0.15 2.73 7.95 -2.91 -0.02 2.71 16 33 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.07 2.83 7.66 -2.39 -0.02 2.81 16 37 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.10 4.20 7.63 -2.91 -0.02 4.17 16 40 H 0.13 3.48 7.10 -2.90 -0.02 3.46 16 Total: -1.00 -69.75 325.78 5.11 -64.64 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.99 Total: 16.99 kcal Atomic # 6 Polarization: -53.06 SS G_CDS: 3.21 Total: -49.84 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.40 Total: -22.59 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.75 5.11 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.315 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds