Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00309 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.82147 * 339.11247 * 8 7 6 10 10 C 1.54377 * 109.83150 * 99.99957 * 8 7 6 11 11 C 1.55308 * 102.25321 * 140.87560 * 10 8 7 12 12 C 1.54949 * 100.93883 * 325.86508 * 11 10 8 13 13 H 1.09003 * 110.30823 * 277.52882 * 12 11 10 14 14 C 1.50700 * 110.30876 * 155.36193 * 12 11 10 15 15 H 1.08005 * 119.99966 * 0.02562 * 14 12 11 16 16 C 1.37873 * 120.00127 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99846 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47572 * 120.00150 * 18 16 14 21 21 H 1.48503 * 109.47092 * 240.00239 * 18 16 14 22 22 O 1.43243 * 109.83324 * 218.13586 * 8 7 6 23 23 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 24 24 C 1.38234 * 119.99618 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 27 27 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 29 29 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 30 30 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 32 32 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 33 33 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 34 34 H 1.08996 * 110.84805 * 259.06262 * 10 8 7 35 35 H 1.09000 * 110.84771 * 22.68032 * 10 8 7 36 36 H 1.08988 * 111.12863 * 83.78574 * 11 10 8 37 37 H 1.09003 * 111.12668 * 207.95249 * 11 10 8 38 38 H 0.97005 * 119.99634 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00235 * 179.97438 * 23 7 6 40 40 H 1.08005 * 119.99804 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 1 3.7328 -3.7477 4.4671 10 6 4.6815 -1.9771 5.2908 11 6 4.4435 -2.0798 6.8221 12 6 2.8970 -2.0075 6.8848 13 1 2.5647 -0.9702 6.8422 14 6 2.3931 -2.6679 8.1422 15 1 3.0922 -3.1025 8.8414 16 6 1.0396 -2.7165 8.4005 17 7 0.1883 -2.1869 7.5493 18 14 0.4150 -3.5346 9.9593 19 1 1.5661 -4.0489 10.7438 20 1 -0.3353 -2.5437 10.7720 21 1 -0.4826 -4.6621 9.6011 22 8 2.4407 -2.7253 5.7274 23 6 2.1612 -0.8884 3.6147 24 6 1.7009 -0.2364 2.4860 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9562 -0.8899 32 1 3.0912 -2.2010 0.1227 33 1 3.9088 -3.3641 2.1332 34 1 5.6078 -2.4771 5.0079 35 1 4.6871 -0.9361 4.9680 36 1 4.8086 -3.0291 7.2137 37 1 4.8976 -1.2396 7.3475 38 1 -0.7639 -2.2214 7.7309 39 1 1.9006 -0.5192 4.5956 40 1 1.0803 0.6420 2.5851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310567305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = -44.253190 kcal Electronic energy + Delta-G solvation = -19399.805025 eV Core-core repulsion = 16564.375824 eV Total energy + Delta-G solvation = -2835.429201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52526 -37.91074 -35.15006 -32.63064 -30.95340 -30.47876 -30.31999 -27.54876 -27.13979 -24.66871 -22.78503 -22.19781 -20.46748 -20.29550 -19.50763 -16.69500 -16.23735 -15.44277 -15.13099 -14.61160 -14.59511 -13.99657 -13.65639 -13.50825 -13.43973 -12.92039 -12.56133 -12.48869 -12.27443 -11.98536 -11.86464 -11.69147 -11.19033 -11.09274 -10.92654 -10.80449 -10.57009 -10.44902 -10.33975 -10.31709 -10.15315 -9.74260 -9.10639 -8.58375 -8.45885 -8.16771 -7.81479 -6.00708 -4.13536 1.75885 1.87055 3.30467 3.38522 3.41958 4.15690 4.42911 4.77610 4.88379 5.07351 5.22341 5.28056 5.38893 5.42728 5.49983 5.52185 5.58083 5.60381 5.75825 5.79022 5.82823 5.84231 5.98004 6.05045 6.21049 6.23586 6.27419 6.30739 6.34714 6.46231 6.57202 6.63825 6.73393 6.80228 6.90625 7.01134 7.25606 7.47222 7.58446 7.89421 8.26410 8.63869 9.03020 9.57595 11.06804 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.004961 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.143767 B = 5642.856769 C = 6266.935474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.091 4.091 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.082 4.082 8 C 0.109 3.891 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.148 4.148 12 C 0.209 3.791 13 H 0.028 0.972 14 C -0.534 4.534 15 H 0.063 0.937 16 C 0.078 3.922 17 N -0.863 5.863 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.349 6.349 23 C -0.085 4.085 24 C -0.118 4.118 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.130 0.870 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 4.365 -13.495 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.091 4.091 5 C -0.144 4.144 6 C -0.136 4.136 7 C -0.082 4.082 8 C 0.049 3.951 9 H 0.083 0.917 10 C -0.183 4.183 11 C -0.186 4.186 12 C 0.154 3.846 13 H 0.046 0.954 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.128 4.128 17 N -0.499 5.499 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 O -0.269 6.269 23 C -0.103 4.103 24 C -0.136 4.136 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.369 4.315 -13.546 14.873 hybrid contribution -0.243 -0.434 0.765 0.913 sum 4.126 3.881 -12.781 13.980 Atomic orbital electron populations 1.21858 0.94590 1.02041 1.01664 1.20061 0.95796 0.95796 0.95486 1.21850 1.01090 0.95422 1.01672 1.19727 0.98806 0.96213 0.94359 1.20853 0.99423 0.96227 0.97911 1.20909 1.00771 0.99936 0.92031 1.20483 0.97275 0.95547 0.94925 1.21438 0.89132 0.96424 0.88068 0.91654 1.23112 0.97483 1.00372 0.97337 1.23348 1.00610 1.01260 0.93344 1.20557 0.86541 0.92922 0.84564 0.95413 1.21151 0.92259 1.40153 1.03551 0.91886 1.25075 0.97076 0.94391 0.96252 1.70039 1.02180 1.42758 1.34910 0.86572 0.78970 0.79377 0.83246 1.19632 1.20904 1.20850 1.88900 1.37169 1.76185 1.24613 1.21137 0.95545 0.94567 0.99017 1.20927 1.00572 1.00185 0.91910 0.92310 0.92807 0.92543 0.90989 0.92375 0.92687 0.92789 0.86895 0.86651 0.91753 0.91582 0.91548 0.91902 0.92975 0.85245 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 2 C -0.05 -0.60 3.09 -91.77 -0.28 -0.89 16 3 C -0.14 -1.46 9.00 37.16 0.33 -1.12 16 4 C -0.09 -1.32 4.78 -104.62 -0.50 -1.82 16 5 C -0.13 -1.83 9.67 -39.58 -0.38 -2.21 16 6 C -0.12 -1.91 9.68 -39.59 -0.38 -2.29 16 7 C -0.08 -1.55 4.85 -104.63 -0.51 -2.06 16 8 C 0.11 2.23 3.74 -27.16 -0.10 2.13 16 9 H 0.07 1.28 8.03 -51.92 -0.42 0.86 16 10 C -0.15 -2.64 6.53 -24.79 -0.16 -2.81 16 11 C -0.15 -3.07 6.53 -24.48 -0.16 -3.23 16 12 C 0.21 5.39 3.22 -26.85 -0.09 5.30 16 13 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 14 C -0.53 -15.04 8.79 -34.44 -0.30 -15.34 16 15 H 0.06 1.73 7.76 -52.48 -0.41 1.32 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 17 N -0.86 -25.70 13.05 55.43 0.72 -24.98 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 O -0.35 -9.13 9.66 -35.23 -0.34 -9.47 16 23 C -0.08 -1.63 9.34 -39.58 -0.37 -2.00 16 24 C -0.12 -1.92 8.71 -39.58 -0.34 -2.27 16 25 H 0.06 0.67 7.40 -51.93 -0.38 0.29 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.74 7.88 -51.93 -0.41 0.34 16 29 H 0.06 0.61 7.38 -51.93 -0.38 0.23 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 1.34 7.95 -52.49 -0.42 0.93 16 33 H 0.12 1.62 8.05 -52.49 -0.42 1.20 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.16 7.82 -51.93 -0.41 0.75 16 36 H 0.07 1.37 8.04 -51.94 -0.42 0.95 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 2.80 7.68 -52.49 -0.40 2.39 16 40 H 0.12 1.69 7.10 -52.48 -0.37 1.32 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -30.51 326.28 -9.26 -39.78 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.53 Total: 1.01 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.01 Total: -27.71 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.72 Total: -24.98 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.34 Total: -9.47 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.51 -9.26 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.476 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds