Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.50706 * 109.47030 * 120.00319 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00309 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.82147 * 339.11247 * 8 7 6 10 10 C 1.54377 * 109.83150 * 99.99957 * 8 7 6 11 11 C 1.55308 * 102.25321 * 140.87560 * 10 8 7 12 12 C 1.54949 * 100.93883 * 325.86508 * 11 10 8 13 13 H 1.09003 * 110.30823 * 277.52882 * 12 11 10 14 14 C 1.50700 * 110.30876 * 155.36193 * 12 11 10 15 15 H 1.08005 * 119.99966 * 0.02562 * 14 12 11 16 16 C 1.37873 * 120.00127 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99846 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47572 * 120.00150 * 18 16 14 21 21 H 1.48503 * 109.47092 * 240.00239 * 18 16 14 22 22 O 1.43243 * 109.83324 * 218.13586 * 8 7 6 23 23 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 24 24 C 1.38234 * 119.99618 * 359.97438 * 23 7 6 25 25 H 1.09004 * 109.47334 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47441 * 59.99583 * 1 2 3 27 27 H 1.08994 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46790 * 239.99929 * 2 1 3 29 29 H 1.09004 * 109.47360 * 60.00072 * 3 2 1 30 30 H 1.08994 * 109.47197 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.46972 * 300.00052 * 3 2 1 32 32 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 33 33 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 34 34 H 1.08996 * 110.84805 * 259.06262 * 10 8 7 35 35 H 1.09000 * 110.84771 * 22.68032 * 10 8 7 36 36 H 1.08988 * 111.12863 * 83.78574 * 11 10 8 37 37 H 1.09003 * 111.12668 * 207.95249 * 11 10 8 38 38 H 0.97005 * 119.99634 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00235 * 179.97438 * 23 7 6 40 40 H 1.08005 * 119.99804 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2882 -2.4858 2.2323 7 6 2.9551 -2.0129 3.4878 8 6 3.4573 -2.7233 4.7183 9 1 3.7328 -3.7477 4.4671 10 6 4.6815 -1.9771 5.2908 11 6 4.4435 -2.0798 6.8221 12 6 2.8970 -2.0075 6.8848 13 1 2.5647 -0.9702 6.8422 14 6 2.3931 -2.6679 8.1422 15 1 3.0922 -3.1025 8.8414 16 6 1.0396 -2.7165 8.4005 17 7 0.1883 -2.1869 7.5493 18 14 0.4150 -3.5346 9.9593 19 1 1.5661 -4.0489 10.7438 20 1 -0.3353 -2.5437 10.7720 21 1 -0.4826 -4.6621 9.6011 22 8 2.4407 -2.7253 5.7274 23 6 2.1612 -0.8884 3.6147 24 6 1.7009 -0.2364 2.4860 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9562 -0.8899 32 1 3.0912 -2.2010 0.1227 33 1 3.9088 -3.3641 2.1332 34 1 5.6078 -2.4771 5.0079 35 1 4.6871 -0.9361 4.9680 36 1 4.8086 -3.0291 7.2137 37 1 4.8976 -1.2396 7.3475 38 1 -0.7639 -2.2214 7.7309 39 1 1.9006 -0.5192 4.5956 40 1 1.0803 0.6420 2.5851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310567305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = -60.206715 kcal Electronic energy + Delta-G solvation = -19400.496822 eV Core-core repulsion = 16564.375824 eV Total energy + Delta-G solvation = -2836.120998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91627 -39.47814 -36.28985 -34.70032 -32.68102 -31.85163 -31.75346 -29.24016 -27.95774 -26.47500 -24.11869 -23.60220 -22.14431 -21.83170 -20.70437 -18.69876 -17.71017 -17.02797 -16.65213 -16.37202 -15.93212 -15.51541 -14.96792 -14.73814 -14.48088 -14.28033 -14.18798 -13.89913 -13.71854 -13.46636 -13.26040 -12.94076 -12.82211 -12.40216 -12.34209 -12.24115 -12.11593 -12.06835 -11.87033 -11.61257 -11.48108 -11.37845 -11.02851 -10.73282 -9.94511 -9.75425 -9.29892 -8.16451 -6.37837 0.46885 0.56722 1.38779 1.40168 1.52812 2.39517 2.82753 3.08750 3.72094 3.76611 3.86007 3.89459 3.97674 4.16401 4.23418 4.28197 4.35919 4.48422 4.58269 4.58836 4.68667 4.73032 4.82542 4.84937 4.93377 4.99956 5.01852 5.09962 5.10736 5.13786 5.25797 5.27515 5.38128 5.41043 5.52625 5.61807 5.73822 5.78590 5.88820 6.16636 6.18773 6.60134 7.03521 7.38842 8.91651 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026306 B = 0.004961 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.143767 B = 5642.856769 C = 6266.935474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.105 4.105 8 C 0.098 3.902 9 H 0.076 0.924 10 C -0.130 4.130 11 C -0.140 4.140 12 C 0.204 3.796 13 H -0.010 1.010 14 C -0.556 4.556 15 H 0.067 0.933 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.963 3.037 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.282 1.282 22 O -0.387 6.387 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 3.755 -15.537 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.084 4.084 5 C -0.138 4.138 6 C -0.135 4.135 7 C -0.105 4.105 8 C 0.039 3.961 9 H 0.094 0.906 10 C -0.167 4.167 11 C -0.178 4.178 12 C 0.148 3.852 13 H 0.007 0.993 14 C -0.593 4.593 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.541 5.541 18 Si 0.787 3.213 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.207 1.207 22 O -0.307 6.307 23 C -0.132 4.132 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.583 3.708 -15.587 16.966 hybrid contribution -0.614 -0.209 1.288 1.442 sum 4.969 3.500 -14.299 15.537 Atomic orbital electron populations 1.21866 0.94334 1.01737 1.02257 1.20155 0.95945 0.96350 0.94465 1.21842 1.01104 0.94674 1.02281 1.20136 0.97615 0.96051 0.94637 1.21302 0.98031 0.95422 0.99029 1.21173 1.00676 1.00565 0.91111 1.20402 0.98678 0.95850 0.95563 1.21712 0.88992 0.97662 0.87703 0.90602 1.23047 0.98032 1.00726 0.94913 1.23227 0.96802 1.02025 0.95725 1.20401 0.89857 0.90650 0.84265 0.99253 1.21603 0.92833 1.40052 1.04848 0.91532 1.25995 0.97356 0.94983 0.99709 1.70201 1.02369 1.44379 1.37140 0.85450 0.78503 0.78228 0.79076 1.18355 1.20059 1.20744 1.88785 1.39880 1.76117 1.25925 1.20933 0.97850 0.96209 0.98167 1.21016 1.00627 1.00361 0.92080 0.93570 0.90445 0.93302 0.88769 0.93410 0.92659 0.90619 0.83140 0.84201 0.88039 0.91421 0.91176 0.90437 0.93034 0.89496 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.01 71.98 0.65 -2.19 16 2 C -0.05 -1.01 3.09 -11.54 -0.04 -1.04 16 3 C -0.14 -2.51 9.00 71.98 0.65 -1.87 16 4 C -0.08 -2.28 4.78 -19.86 -0.09 -2.38 16 5 C -0.12 -3.12 9.67 22.27 0.22 -2.90 16 6 C -0.12 -3.55 9.68 22.27 0.22 -3.34 16 7 C -0.10 -4.01 4.85 -19.87 -0.10 -4.11 16 8 C 0.10 4.07 3.74 30.31 0.11 4.19 16 9 H 0.08 2.93 8.03 -2.38 -0.02 2.91 16 10 C -0.13 -4.64 6.53 31.85 0.21 -4.43 16 11 C -0.14 -5.85 6.53 32.05 0.21 -5.65 16 12 C 0.20 11.04 3.22 30.51 0.10 11.13 16 13 H -0.01 -0.61 8.09 -2.39 -0.02 -0.63 16 14 C -0.56 -32.40 8.79 25.60 0.23 -32.17 16 15 H 0.07 3.71 7.76 -2.91 -0.02 3.68 16 16 C 0.02 1.25 5.43 84.65 0.46 1.71 16 17 N -0.90 -56.45 13.05 21.45 0.28 -56.17 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 O -0.39 -21.26 9.66 -148.98 -1.44 -22.69 16 23 C -0.11 -4.63 9.34 22.27 0.21 -4.42 16 24 C -0.12 -4.09 8.71 22.27 0.19 -3.89 16 25 H 0.05 1.01 7.40 -2.38 -0.02 0.99 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.51 7.88 -2.39 -0.02 1.49 16 29 H 0.05 0.94 7.38 -2.38 -0.02 0.92 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.15 2.81 7.95 -2.91 -0.02 2.78 16 33 H 0.14 3.48 8.05 -2.91 -0.02 3.46 16 34 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 36 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 37 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.26 15.34 8.31 -92.70 -0.77 14.56 16 39 H 0.09 4.21 7.68 -2.91 -0.02 4.19 16 40 H 0.12 3.73 7.10 -2.91 -0.02 3.71 16 Total: -1.00 -69.87 326.28 5.07 -64.80 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.99 Total: 18.30 kcal Atomic # 6 Polarization: -54.58 SS G_CDS: 3.22 Total: -51.36 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.44 Total: -22.69 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.87 5.07 -64.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.591 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds