Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47192 * 2 1 4 4 C 1.50701 * 109.47031 * 119.99641 * 2 1 3 5 5 C 1.38232 * 119.99886 * 299.91045 * 4 2 1 6 6 C 1.38243 * 120.00069 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 5 4 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 5 9 9 H 1.09003 * 110.32940 * 340.80100 * 8 7 6 10 10 C 1.54480 * 110.37104 * 103.16538 * 8 7 6 11 11 C 1.54508 * 104.06237 * 142.81171 * 10 8 7 12 12 C 1.54478 * 104.06416 * 359.97438 * 11 10 8 13 13 H 1.09002 * 110.37488 * 94.85287 * 12 11 10 14 14 C 1.50700 * 110.46857 * 217.14635 * 12 11 10 15 15 H 1.08004 * 119.99619 * 356.88538 * 14 12 11 16 16 C 1.37871 * 119.99984 * 176.89193 * 14 12 11 17 17 N 1.31519 * 120.00232 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99962 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46795 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47391 * 119.99778 * 18 16 14 21 21 H 1.48504 * 109.46968 * 239.99775 * 18 16 14 22 22 O 1.44423 * 110.37194 * 218.54805 * 8 7 6 23 23 C 1.38230 * 120.00326 * 359.97438 * 7 6 5 24 24 C 1.38234 * 120.00242 * 119.99991 * 4 2 1 25 25 H 1.08996 * 109.47630 * 300.00641 * 1 2 3 26 26 H 1.09005 * 109.46829 * 60.00427 * 1 2 3 27 27 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 240.00041 * 2 1 3 29 29 H 1.09005 * 109.46427 * 299.99813 * 3 2 1 30 30 H 1.09004 * 109.47183 * 59.99497 * 3 2 1 31 31 H 1.08996 * 109.46844 * 180.02562 * 3 2 1 32 32 H 1.08001 * 120.00365 * 0.06714 * 5 4 2 33 33 H 1.08000 * 119.99728 * 180.36512 * 6 5 4 34 34 H 1.09004 * 110.50768 * 261.45522 * 10 8 7 35 35 H 1.09000 * 110.51008 * 24.16244 * 10 8 7 36 36 H 1.08999 * 110.50900 * 241.35559 * 11 10 8 37 37 H 1.08997 * 110.62684 * 118.69947 * 11 10 8 38 38 H 0.97003 * 119.99965 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00371 * 179.97438 * 23 7 6 40 40 H 1.08000 * 119.99729 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6999 -0.2369 2.4860 6 6 2.1602 -0.8888 3.6148 7 6 2.9546 -2.0130 3.4880 8 6 3.4569 -2.7233 4.7185 9 1 3.4029 -2.0641 5.5849 10 6 2.6399 -4.0105 4.9675 11 6 3.6845 -5.0235 5.4872 12 6 5.0091 -4.2286 5.4902 13 1 5.1932 -3.8015 6.4760 14 6 6.1568 -5.1155 5.0811 15 1 5.9862 -6.1641 4.8866 16 6 7.4245 -4.5883 4.9552 17 7 7.6321 -3.3113 5.1917 18 14 8.8473 -5.6878 4.4489 19 1 8.3535 -7.0732 4.2438 20 1 9.4394 -5.1807 3.1850 21 1 9.8801 -5.6838 5.5159 22 8 4.8124 -3.1795 4.5175 23 6 3.2882 -2.4855 2.2326 24 6 2.8270 -1.8343 1.1038 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.0792 0.6414 2.5850 33 1 1.8956 -0.5223 4.5956 34 1 1.8708 -3.8352 5.7197 35 1 2.1933 -4.3651 4.0385 36 1 3.7543 -5.8788 4.8152 37 1 3.4330 -5.3510 6.4959 38 1 8.5240 -2.9404 5.1028 39 1 3.9092 -3.3636 2.1335 40 1 3.0876 -2.2036 0.1229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310567306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = -43.678373 kcal Electronic energy + Delta-G solvation = -19282.438844 eV Core-core repulsion = 16447.034569 eV Total energy + Delta-G solvation = -2835.404275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52417 -37.89380 -35.23318 -32.62191 -30.93996 -30.60334 -30.28146 -27.49635 -27.20037 -24.71233 -22.90385 -22.09408 -20.90955 -19.94011 -19.46957 -16.84213 -16.14547 -15.48172 -14.98263 -14.75444 -14.34711 -14.08086 -13.78486 -13.53922 -13.37848 -12.96252 -12.80578 -12.59933 -12.41462 -12.14601 -11.86833 -11.58869 -11.23270 -11.13215 -10.94152 -10.82080 -10.61205 -10.50516 -10.33276 -10.18715 -10.00335 -9.65627 -9.11343 -8.60957 -8.52396 -8.20420 -7.98464 -6.00795 -4.13596 1.69635 1.80564 3.30366 3.38239 3.41751 4.10003 4.42494 4.72653 4.82848 5.00721 5.17092 5.28413 5.32480 5.38824 5.48444 5.53700 5.57704 5.63426 5.73275 5.75211 5.80619 5.83086 5.94267 5.96127 6.17810 6.18734 6.25191 6.30252 6.37811 6.39820 6.55444 6.68014 6.78438 6.81442 6.86078 6.95576 7.18592 7.40141 7.51672 7.89053 8.22265 8.53053 8.97855 9.56970 11.06996 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004733 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.756749 B = 5914.397400 C = 6434.026747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.065 4.065 8 C 0.099 3.901 9 H 0.056 0.944 10 C -0.142 4.142 11 C -0.147 4.147 12 C 0.205 3.795 13 H 0.025 0.975 14 C -0.530 4.530 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.862 5.862 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 O -0.340 6.340 23 C -0.086 4.086 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 6.233 -7.138 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.134 4.134 7 C -0.065 4.065 8 C 0.040 3.960 9 H 0.074 0.926 10 C -0.180 4.180 11 C -0.185 4.185 12 C 0.149 3.851 13 H 0.042 0.958 14 C -0.568 4.568 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 O -0.260 6.260 23 C -0.104 4.104 24 C -0.141 4.141 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.944 6.452 -7.281 16.192 hybrid contribution 0.707 -0.549 -0.067 0.898 sum -12.237 5.903 -7.348 15.446 Atomic orbital electron populations 1.21846 0.94699 1.01866 1.01541 1.20079 0.95624 0.95919 0.95676 1.21855 1.01429 0.95272 1.01513 1.19732 0.98744 0.96134 0.94327 1.20766 1.01221 0.99976 0.91928 1.20935 0.98651 0.95428 0.98361 1.19897 0.96479 0.95024 0.95088 1.21644 0.87187 0.94179 0.92953 0.92596 1.22934 0.98211 0.96282 1.00596 1.23053 0.96790 0.98880 0.99740 1.20530 0.90926 0.84295 0.89334 0.95766 1.21065 0.91492 0.94560 1.49644 0.91733 1.25086 0.98874 0.94852 0.94087 1.70054 1.21702 1.11760 1.46316 0.86564 0.82328 0.80904 0.78344 1.19604 1.20834 1.20883 1.89547 1.23396 1.54640 1.58375 1.21105 0.97710 1.00085 0.91494 1.21031 0.98668 0.95945 0.98455 0.92549 0.92760 0.92611 0.90776 0.92766 0.92524 0.92452 0.86738 0.86489 0.92243 0.91842 0.91727 0.92694 0.92968 0.85209 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.01 37.16 0.33 -1.00 16 2 C -0.05 -0.59 3.09 -91.77 -0.28 -0.88 16 3 C -0.14 -1.43 9.01 37.16 0.33 -1.10 16 4 C -0.09 -1.24 4.78 -104.62 -0.50 -1.74 16 5 C -0.12 -1.70 8.71 -39.58 -0.34 -2.04 16 6 C -0.12 -1.84 9.68 -39.58 -0.38 -2.22 16 7 C -0.06 -1.21 4.94 -104.63 -0.52 -1.73 16 8 C 0.10 2.07 3.49 -27.11 -0.09 1.97 16 9 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 10 C -0.14 -2.65 6.61 -25.16 -0.17 -2.81 16 11 C -0.15 -3.10 6.62 -25.16 -0.17 -3.26 16 12 C 0.20 5.35 3.11 -27.11 -0.08 5.26 16 13 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 14 C -0.53 -15.00 8.78 -34.44 -0.30 -15.30 16 15 H 0.06 1.77 7.60 -52.48 -0.40 1.37 16 16 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 17 N -0.86 -25.94 12.94 55.43 0.72 -25.22 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 O -0.34 -8.97 9.89 -35.23 -0.35 -9.32 16 23 C -0.09 -1.59 9.25 -39.59 -0.37 -1.96 16 24 C -0.12 -1.92 9.67 -39.58 -0.38 -2.30 16 25 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.33 7.10 -52.49 -0.37 0.96 16 33 H 0.12 1.64 8.05 -52.49 -0.42 1.22 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.13 7.77 -51.93 -0.40 0.73 16 36 H 0.06 1.36 7.73 -51.93 -0.40 0.96 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 2.61 7.77 -52.49 -0.41 2.20 16 40 H 0.12 1.57 7.95 -52.49 -0.42 1.15 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.78 325.82 -9.27 -40.06 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.51 Total: 0.09 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.02 Total: -27.01 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.72 Total: -25.22 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.35 Total: -9.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.78 -9.27 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.620 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds