Wall clock time and date at job start Mon Mar 30 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47192 * 2 1 4 4 C 1.50701 * 109.47031 * 119.99641 * 2 1 3 5 5 C 1.38232 * 119.99886 * 299.91045 * 4 2 1 6 6 C 1.38243 * 120.00069 * 179.97438 * 5 4 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 5 4 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 5 9 9 H 1.09003 * 110.32940 * 340.80100 * 8 7 6 10 10 C 1.54480 * 110.37104 * 103.16538 * 8 7 6 11 11 C 1.54508 * 104.06237 * 142.81171 * 10 8 7 12 12 C 1.54478 * 104.06416 * 359.97438 * 11 10 8 13 13 H 1.09002 * 110.37488 * 94.85287 * 12 11 10 14 14 C 1.50700 * 110.46857 * 217.14635 * 12 11 10 15 15 H 1.08004 * 119.99619 * 356.88538 * 14 12 11 16 16 C 1.37871 * 119.99984 * 176.89193 * 14 12 11 17 17 N 1.31519 * 120.00232 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99962 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46795 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47391 * 119.99778 * 18 16 14 21 21 H 1.48504 * 109.46968 * 239.99775 * 18 16 14 22 22 O 1.44423 * 110.37194 * 218.54805 * 8 7 6 23 23 C 1.38230 * 120.00326 * 359.97438 * 7 6 5 24 24 C 1.38234 * 120.00242 * 119.99991 * 4 2 1 25 25 H 1.08996 * 109.47630 * 300.00641 * 1 2 3 26 26 H 1.09005 * 109.46829 * 60.00427 * 1 2 3 27 27 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 240.00041 * 2 1 3 29 29 H 1.09005 * 109.46427 * 299.99813 * 3 2 1 30 30 H 1.09004 * 109.47183 * 59.99497 * 3 2 1 31 31 H 1.08996 * 109.46844 * 180.02562 * 3 2 1 32 32 H 1.08001 * 120.00365 * 0.06714 * 5 4 2 33 33 H 1.08000 * 119.99728 * 180.36512 * 6 5 4 34 34 H 1.09004 * 110.50768 * 261.45522 * 10 8 7 35 35 H 1.09000 * 110.51008 * 24.16244 * 10 8 7 36 36 H 1.08999 * 110.50900 * 241.35559 * 11 10 8 37 37 H 1.08997 * 110.62684 * 118.69947 * 11 10 8 38 38 H 0.97003 * 119.99965 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00371 * 179.97438 * 23 7 6 40 40 H 1.08000 * 119.99729 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6999 -0.2369 2.4860 6 6 2.1602 -0.8888 3.6148 7 6 2.9546 -2.0130 3.4880 8 6 3.4569 -2.7233 4.7185 9 1 3.4029 -2.0641 5.5849 10 6 2.6399 -4.0105 4.9675 11 6 3.6845 -5.0235 5.4872 12 6 5.0091 -4.2286 5.4902 13 1 5.1932 -3.8015 6.4760 14 6 6.1568 -5.1155 5.0811 15 1 5.9862 -6.1641 4.8866 16 6 7.4245 -4.5883 4.9552 17 7 7.6321 -3.3113 5.1917 18 14 8.8473 -5.6878 4.4489 19 1 8.3535 -7.0732 4.2438 20 1 9.4394 -5.1807 3.1850 21 1 9.8801 -5.6838 5.5159 22 8 4.8124 -3.1795 4.5175 23 6 3.2882 -2.4855 2.2326 24 6 2.8270 -1.8343 1.1038 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.0792 0.6414 2.5850 33 1 1.8956 -0.5223 4.5956 34 1 1.8708 -3.8352 5.7197 35 1 2.1933 -4.3651 4.0385 36 1 3.7543 -5.8788 4.8152 37 1 3.4330 -5.3510 6.4959 38 1 8.5240 -2.9404 5.1028 39 1 3.9092 -3.3636 2.1335 40 1 3.0876 -2.2036 0.1229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310567306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:39 Heat of formation + Delta-G solvation = -59.801994 kcal Electronic energy + Delta-G solvation = -19283.138017 eV Core-core repulsion = 16447.034569 eV Total energy + Delta-G solvation = -2836.103448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86391 -39.49697 -36.32907 -34.69791 -32.64765 -32.00794 -31.65338 -29.19626 -27.92760 -26.46943 -24.33070 -23.38124 -22.44948 -21.59596 -20.66227 -18.86148 -17.44104 -17.03366 -16.69101 -16.16658 -16.07924 -15.40765 -15.20891 -14.61418 -14.49657 -14.38245 -14.28829 -14.04991 -13.73234 -13.52114 -13.17366 -12.90305 -12.85508 -12.43898 -12.28253 -12.20940 -12.05600 -12.00439 -11.86656 -11.53545 -11.44999 -11.32243 -11.05917 -10.75142 -10.11354 -9.77528 -9.34916 -8.18147 -6.38828 0.44033 0.54879 1.38414 1.39712 1.52449 2.38694 2.81764 3.07365 3.61035 3.80431 3.88180 3.94325 4.04626 4.14772 4.22304 4.28136 4.37467 4.50346 4.53786 4.59517 4.69003 4.74078 4.81999 4.86234 4.98008 5.02042 5.03860 5.04139 5.10063 5.19346 5.25313 5.26660 5.38238 5.44373 5.48348 5.58554 5.71349 5.77586 5.83767 6.13106 6.15914 6.52010 6.90323 7.36759 8.90707 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004733 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.756749 B = 5914.397400 C = 6434.026747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.091 4.091 8 C 0.092 3.908 9 H 0.055 0.945 10 C -0.129 4.129 11 C -0.139 4.139 12 C 0.195 3.805 13 H -0.008 1.008 14 C -0.552 4.552 15 H 0.067 0.933 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.964 3.036 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.274 1.274 22 O -0.377 6.377 23 C -0.110 4.110 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 6.947 -8.344 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.081 4.081 5 C -0.132 4.132 6 C -0.136 4.136 7 C -0.091 4.091 8 C 0.034 3.966 9 H 0.073 0.927 10 C -0.166 4.166 11 C -0.177 4.177 12 C 0.140 3.860 13 H 0.010 0.990 14 C -0.589 4.589 15 H 0.085 0.915 16 C -0.181 4.181 17 N -0.541 5.541 18 Si 0.788 3.212 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.199 1.199 22 O -0.297 6.297 23 C -0.128 4.128 24 C -0.146 4.146 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.782 7.155 -8.483 18.484 hybrid contribution 1.202 -0.684 0.279 1.411 sum -13.580 6.471 -8.204 17.135 Atomic orbital electron populations 1.21830 0.93106 1.01940 1.02787 1.20163 0.96841 0.96140 0.94133 1.21855 1.00593 0.94703 1.02821 1.20142 0.97044 0.95065 0.95877 1.21129 1.00553 1.00333 0.91193 1.21159 0.97948 0.94371 1.00105 1.19828 0.98540 0.96681 0.94037 1.21855 0.85146 0.95348 0.94281 0.92736 1.22864 0.97826 0.94193 1.01754 1.22928 0.94996 0.98670 1.01061 1.20445 0.93076 0.84772 0.87742 0.99003 1.21497 0.92857 0.95153 1.49415 0.91516 1.25993 1.01836 0.96255 0.93972 1.70198 1.22353 1.13761 1.47793 0.85442 0.78656 0.79210 0.77924 1.18410 1.20724 1.19898 1.89455 1.26956 1.55022 1.58244 1.20977 0.98848 1.00171 0.92845 1.21222 0.98800 0.96465 0.98158 0.92042 0.90853 0.93146 0.90282 0.90700 0.92066 0.93803 0.83532 0.84697 0.88999 0.91159 0.92083 0.90675 0.92952 0.88289 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.01 71.98 0.65 -1.46 16 2 C -0.05 -1.02 3.09 -11.54 -0.04 -1.05 16 3 C -0.14 -2.39 9.01 71.99 0.65 -1.75 16 4 C -0.08 -2.09 4.78 -19.87 -0.09 -2.18 16 5 C -0.11 -2.91 8.71 22.27 0.19 -2.72 16 6 C -0.12 -3.59 9.68 22.27 0.22 -3.37 16 7 C -0.09 -3.43 4.94 -19.87 -0.10 -3.53 16 8 C 0.09 3.93 3.49 30.35 0.11 4.03 16 9 H 0.05 2.27 8.04 -2.39 -0.02 2.26 16 10 C -0.13 -4.73 6.61 31.61 0.21 -4.52 16 11 C -0.14 -5.91 6.62 31.61 0.21 -5.70 16 12 C 0.20 10.64 3.11 30.35 0.09 10.74 16 13 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 14 C -0.55 -32.27 8.78 25.60 0.22 -32.04 16 15 H 0.07 3.74 7.60 -2.91 -0.02 3.72 16 16 C 0.02 1.25 5.42 84.65 0.46 1.71 16 17 N -0.90 -56.44 12.94 21.45 0.28 -56.16 16 18 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 O -0.38 -20.85 9.89 -148.98 -1.47 -22.32 16 23 C -0.11 -4.20 9.25 22.27 0.21 -4.00 16 24 C -0.13 -3.95 9.67 22.27 0.22 -3.74 16 25 H 0.06 0.87 7.39 -2.39 -0.02 0.86 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.97 7.39 -2.38 -0.02 0.95 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.15 2.80 7.10 -2.91 -0.02 2.77 16 33 H 0.14 3.53 8.05 -2.91 -0.02 3.50 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 2.48 7.77 -2.39 -0.02 2.46 16 36 H 0.06 2.60 7.73 -2.39 -0.02 2.58 16 37 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.10 4.28 7.77 -2.91 -0.02 4.26 16 40 H 0.13 3.49 7.95 -2.91 -0.02 3.47 16 Total: -1.00 -69.42 325.82 5.02 -64.39 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.99 Total: 16.52 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 3.20 Total: -49.58 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.47 Total: -22.32 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.42 5.02 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310567306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.593 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds