Wall clock time and date at job start Mon Mar 30 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99661 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99842 * 3 2 1 5 5 H 1.48497 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46747 * 120.00089 * 3 2 1 7 7 C 1.39929 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99803 * 197.87634 * 7 2 1 9 9 C 1.41407 * 119.99888 * 17.88069 * 7 2 1 10 10 C 1.40792 * 120.20779 * 204.46293 * 9 7 2 11 11 C 1.37635 * 119.89543 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32757 * 359.72297 * 11 10 9 13 13 C 1.39298 * 120.42191 * 0.55371 * 12 11 10 14 14 N 1.39674 * 119.95298 * 179.72311 * 13 12 11 15 15 C 1.46503 * 119.99941 * 359.72564 * 14 13 12 16 16 C 1.53004 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.50021 * 304.91917 * 16 15 14 18 18 C 1.53123 * 109.50310 * 184.80290 * 16 15 14 19 19 C 1.53115 * 109.15873 * 182.40153 * 18 16 15 20 20 C 1.53037 * 109.27881 * 57.65786 * 19 18 16 21 21 N 1.46840 * 109.52163 * 300.81726 * 20 19 18 22 22 C 1.46845 * 111.20011 * 61.74413 * 21 20 19 23 23 C 1.38318 * 120.09378 * 359.44772 * 13 12 11 24 24 H 0.97000 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04655 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.84006 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.79018 * 180.27672 * 12 11 10 28 28 H 0.96998 * 120.00584 * 179.72938 * 14 13 12 29 29 H 1.09001 * 109.47202 * 299.99670 * 15 14 13 30 30 H 1.09000 * 109.47332 * 60.00199 * 15 14 13 31 31 H 1.09000 * 109.51985 * 302.31028 * 18 16 15 32 32 H 1.09004 * 109.51837 * 62.49759 * 18 16 15 33 33 H 1.08995 * 109.50846 * 297.71259 * 19 18 16 34 34 H 1.09008 * 109.53234 * 177.61618 * 19 18 16 35 35 H 1.09005 * 109.46278 * 180.80145 * 20 19 18 36 36 H 1.08997 * 109.46473 * 60.83204 * 20 19 18 37 37 H 1.00900 * 111.00336 * 297.64266 * 21 20 19 38 38 H 1.09003 * 109.46545 * 178.24576 * 22 21 20 39 39 H 1.08999 * 109.46563 * 58.27369 * 22 21 20 40 40 H 1.08003 * 120.16379 * 180.29035 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2876 9 6 1.3522 -2.4070 -0.3749 10 6 1.8256 -3.6500 0.0868 11 6 1.1821 -4.8092 -0.2822 12 6 0.0663 -4.7594 -1.1018 13 6 -0.4102 -3.5375 -1.5710 14 7 -1.5326 -3.4991 -2.4015 15 6 -2.2041 -4.7439 -2.7834 16 6 -3.3943 -4.4238 -3.6902 17 1 -4.0517 -3.7126 -3.1902 18 6 -4.1672 -5.7106 -3.9924 19 6 -5.3203 -5.3915 -4.9480 20 6 -4.7592 -4.7577 -6.2229 21 7 -4.0296 -3.5302 -5.8806 22 6 -2.8891 -3.8181 -5.0016 23 6 0.2231 -2.3617 -1.2110 24 1 -0.4850 0.8400 0.0004 25 1 2.6924 -3.6935 0.7295 26 1 1.5457 -5.7621 0.0728 27 1 -0.4346 -5.6741 -1.3823 28 1 -1.8674 -2.6483 -2.7255 29 1 -1.5034 -5.3858 -3.3173 30 1 -2.5565 -5.2561 -1.8881 31 1 -3.4993 -6.4361 -4.4568 32 1 -4.5658 -6.1224 -3.0652 33 1 -6.0086 -4.6958 -4.4682 34 1 -5.8491 -6.3106 -5.2007 35 1 -5.5790 -4.5162 -6.8996 36 1 -4.0816 -5.4592 -6.7095 37 1 -4.6449 -2.8483 -5.4630 38 1 -2.3505 -2.8941 -4.7910 39 1 -2.2202 -4.5240 -5.4939 40 1 -0.1482 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:51 Heat of formation + Delta-G solvation = 2.592658 kcal Electronic energy + Delta-G solvation = -19043.704508 eV Core-core repulsion = 16242.599446 eV Total energy + Delta-G solvation = -2801.105061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24998 -37.63225 -35.05655 -33.37227 -32.01820 -31.17338 -29.39687 -27.79490 -25.25165 -24.75806 -23.72112 -21.81828 -20.96469 -20.12113 -19.76924 -17.16596 -16.25872 -15.62394 -15.41828 -14.94056 -14.72623 -14.72042 -14.26223 -13.76383 -13.12569 -13.03069 -12.74509 -12.50289 -12.25299 -12.23046 -11.88666 -11.49233 -11.39282 -11.32810 -11.04032 -10.97603 -10.69577 -10.57693 -10.47991 -10.37748 -9.58755 -9.42113 -9.20578 -8.73768 -8.43559 -7.27738 -6.69955 -6.13003 -4.28171 2.91317 3.10898 3.14459 3.26337 3.37697 4.00142 4.16472 4.26247 4.61758 4.73116 4.75245 4.90838 4.91216 5.19917 5.30483 5.44199 5.48648 5.69275 5.72975 5.75285 5.86170 5.87697 5.98004 6.08437 6.14818 6.30501 6.31605 6.61877 6.88515 6.91281 7.14374 7.17028 7.24169 7.41068 7.47617 7.84423 7.99575 8.13951 8.20521 8.52312 8.73941 8.87184 9.04514 9.15437 10.28722 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.004459 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.621627 B = 6277.394479 C = 7150.344596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.216 3.784 14 N -0.760 5.760 15 C 0.147 3.853 16 C -0.134 4.134 17 H 0.072 0.928 18 C -0.112 4.112 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.063 3.937 23 C -0.232 4.232 24 H 0.277 0.723 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.388 0.612 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.339 0.661 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 -6.120 -8.834 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.117 3.883 14 N -0.394 5.394 15 C 0.021 3.979 16 C -0.155 4.155 17 H 0.091 0.909 18 C -0.150 4.150 19 C -0.196 4.196 20 C -0.074 4.074 21 N -0.315 5.315 22 C -0.067 4.067 23 C -0.256 4.256 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.222 0.778 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.418 -6.158 -9.428 14.680 hybrid contribution -0.319 0.800 0.943 1.277 sum -9.737 -5.358 -8.485 13.983 Atomic orbital electron populations 1.69862 1.07509 1.28839 1.35690 1.25866 0.94658 1.01049 0.92296 0.86443 0.80206 0.80553 0.79911 1.18899 1.20484 1.19109 1.19524 0.98078 0.91345 1.40651 0.90637 1.17314 0.90100 0.91802 0.87187 1.20860 1.04874 0.92943 1.09120 1.20278 0.95129 0.96234 0.96894 1.19876 1.04483 0.94401 1.13500 1.17643 0.86334 0.94307 0.90019 1.44413 1.32021 1.06329 1.56642 1.20974 0.92266 0.88286 0.96420 1.22091 0.97588 0.98171 0.97623 0.90918 1.21531 0.96960 0.97056 0.99451 1.22257 0.98164 1.01508 0.97670 1.22029 0.97630 0.91870 0.95908 1.60674 1.12249 1.11425 1.47106 1.22092 0.93102 1.01320 0.90161 1.20723 1.02666 0.95020 1.07165 0.91177 0.89424 0.89696 0.89764 0.77822 0.93363 0.93512 0.91619 0.91746 0.92069 0.91519 0.90998 0.90995 0.84329 0.90213 0.90814 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.87 10.96 55.55 0.61 -20.26 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.06 29.60 -169.99 -5.03 14.02 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 10 C -0.26 -6.61 9.79 -38.84 -0.38 -6.99 16 11 C -0.07 -1.57 10.01 -39.69 -0.40 -1.96 16 12 C -0.30 -6.93 9.32 -39.08 -0.36 -7.30 16 13 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16 14 N -0.76 -14.36 5.47 -58.68 -0.32 -14.68 16 15 C 0.15 2.24 4.30 -4.04 -0.02 2.23 16 16 C -0.13 -1.60 2.37 -90.53 -0.21 -1.82 16 17 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -1.14 5.29 -26.61 -0.14 -1.28 16 19 C -0.16 -1.36 6.08 -26.65 -0.16 -1.52 16 20 C 0.06 0.50 6.55 -3.84 -0.03 0.48 16 21 N -0.69 -7.33 6.87 -113.82 -0.78 -8.11 16 22 C 0.06 0.75 5.70 -3.83 -0.02 0.73 16 23 C -0.23 -6.12 8.53 -38.67 -0.33 -6.45 16 24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.76 6.70 -52.49 -0.35 1.41 16 28 H 0.39 6.99 7.67 -40.82 -0.31 6.68 16 29 H 0.05 0.76 7.95 -51.93 -0.41 0.34 16 30 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.34 3.32 8.86 -39.29 -0.35 2.98 16 38 H 0.08 1.05 7.21 -51.93 -0.37 0.68 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.12 3.16 6.16 -52.48 -0.32 2.83 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -28.19 318.49 -10.67 -38.86 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.31 Total: 12.63 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -3.64 Total: -27.27 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.49 Total: -43.05 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.19 -10.67 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.457 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds