Wall clock time and date at job start Mon Mar 30 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99661 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99842 * 3 2 1 5 5 H 1.48497 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46747 * 120.00089 * 3 2 1 7 7 C 1.39929 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99803 * 197.87634 * 7 2 1 9 9 C 1.41407 * 119.99888 * 17.88069 * 7 2 1 10 10 C 1.40792 * 120.20779 * 204.46293 * 9 7 2 11 11 C 1.37635 * 119.89543 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32757 * 359.72297 * 11 10 9 13 13 C 1.39298 * 120.42191 * 0.55371 * 12 11 10 14 14 N 1.39674 * 119.95298 * 179.72311 * 13 12 11 15 15 C 1.46503 * 119.99941 * 359.72564 * 14 13 12 16 16 C 1.53004 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.50021 * 304.91917 * 16 15 14 18 18 C 1.53123 * 109.50310 * 184.80290 * 16 15 14 19 19 C 1.53115 * 109.15873 * 182.40153 * 18 16 15 20 20 C 1.53037 * 109.27881 * 57.65786 * 19 18 16 21 21 N 1.46840 * 109.52163 * 300.81726 * 20 19 18 22 22 C 1.46845 * 111.20011 * 61.74413 * 21 20 19 23 23 C 1.38318 * 120.09378 * 359.44772 * 13 12 11 24 24 H 0.97000 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04655 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.84006 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.79018 * 180.27672 * 12 11 10 28 28 H 0.96998 * 120.00584 * 179.72938 * 14 13 12 29 29 H 1.09001 * 109.47202 * 299.99670 * 15 14 13 30 30 H 1.09000 * 109.47332 * 60.00199 * 15 14 13 31 31 H 1.09000 * 109.51985 * 302.31028 * 18 16 15 32 32 H 1.09004 * 109.51837 * 62.49759 * 18 16 15 33 33 H 1.08995 * 109.50846 * 297.71259 * 19 18 16 34 34 H 1.09008 * 109.53234 * 177.61618 * 19 18 16 35 35 H 1.09005 * 109.46278 * 180.80145 * 20 19 18 36 36 H 1.08997 * 109.46473 * 60.83204 * 20 19 18 37 37 H 1.00900 * 111.00336 * 297.64266 * 21 20 19 38 38 H 1.09003 * 109.46545 * 178.24576 * 22 21 20 39 39 H 1.08999 * 109.46563 * 58.27369 * 22 21 20 40 40 H 1.08003 * 120.16379 * 180.29035 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2876 9 6 1.3522 -2.4070 -0.3749 10 6 1.8256 -3.6500 0.0868 11 6 1.1821 -4.8092 -0.2822 12 6 0.0663 -4.7594 -1.1018 13 6 -0.4102 -3.5375 -1.5710 14 7 -1.5326 -3.4991 -2.4015 15 6 -2.2041 -4.7439 -2.7834 16 6 -3.3943 -4.4238 -3.6902 17 1 -4.0517 -3.7126 -3.1902 18 6 -4.1672 -5.7106 -3.9924 19 6 -5.3203 -5.3915 -4.9480 20 6 -4.7592 -4.7577 -6.2229 21 7 -4.0296 -3.5302 -5.8806 22 6 -2.8891 -3.8181 -5.0016 23 6 0.2231 -2.3617 -1.2110 24 1 -0.4850 0.8400 0.0004 25 1 2.6924 -3.6935 0.7295 26 1 1.5457 -5.7621 0.0728 27 1 -0.4346 -5.6741 -1.3823 28 1 -1.8674 -2.6483 -2.7255 29 1 -1.5034 -5.3858 -3.3173 30 1 -2.5565 -5.2561 -1.8881 31 1 -3.4993 -6.4361 -4.4568 32 1 -4.5658 -6.1224 -3.0652 33 1 -6.0086 -4.6958 -4.4682 34 1 -5.8491 -6.3106 -5.2007 35 1 -5.5790 -4.5162 -6.8996 36 1 -4.0816 -5.4592 -6.7095 37 1 -4.6449 -2.8483 -5.4630 38 1 -2.3505 -2.8941 -4.7910 39 1 -2.2202 -4.5240 -5.4939 40 1 -0.1482 -1.4133 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:51 Heat of formation + Delta-G solvation = -14.429248 kcal Electronic energy + Delta-G solvation = -19044.442633 eV Core-core repulsion = 16242.599446 eV Total energy + Delta-G solvation = -2801.843187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29299 -39.33506 -36.60595 -35.18599 -33.11384 -32.19871 -31.33903 -29.37218 -27.14873 -26.09929 -24.59704 -23.15692 -22.44962 -21.53166 -21.15196 -19.06027 -17.68781 -16.92021 -16.52713 -16.44448 -16.36814 -15.99500 -15.56147 -14.84689 -14.58338 -14.48993 -14.23692 -14.00347 -13.72873 -13.42654 -13.12916 -12.93763 -12.84265 -12.72834 -12.42769 -12.22153 -12.16624 -12.01048 -11.61111 -11.57875 -11.35699 -11.26687 -11.06266 -10.49920 -9.29057 -9.25300 -8.61855 -7.90777 -6.32087 1.09543 1.33409 1.38728 1.49878 1.60014 2.23340 2.78505 2.84193 3.33378 3.71481 3.85017 3.86464 3.92851 4.11265 4.31852 4.43191 4.50129 4.53947 4.63255 4.73025 4.74488 4.80801 4.96436 4.98774 5.00561 5.09569 5.13096 5.19089 5.20239 5.30739 5.37813 5.45130 5.60531 5.96006 6.04886 6.10841 6.21511 6.25924 6.44941 6.58166 6.94052 7.04991 7.06630 7.24830 8.38440 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.004459 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.621627 B = 6277.394479 C = 7150.344596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.109 3.891 10 C -0.286 4.286 11 C -0.063 4.063 12 C -0.304 4.304 13 C 0.219 3.781 14 N -0.753 5.753 15 C 0.146 3.854 16 C -0.121 4.121 17 H 0.070 0.930 18 C -0.110 4.110 19 C -0.150 4.150 20 C 0.055 3.945 21 N -0.693 5.693 22 C 0.069 3.931 23 C -0.260 4.260 24 H 0.285 0.715 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.391 0.609 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.345 0.655 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 -6.760 -9.700 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.306 4.306 11 C -0.081 4.081 12 C -0.327 4.327 13 C 0.118 3.882 14 N -0.385 5.385 15 C 0.021 3.979 16 C -0.142 4.142 17 H 0.088 0.912 18 C -0.148 4.148 19 C -0.189 4.189 20 C -0.075 4.075 21 N -0.321 5.321 22 C -0.061 4.061 23 C -0.285 4.285 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.225 0.775 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.629 -6.823 -10.314 16.307 hybrid contribution -0.038 0.882 1.166 1.462 sum -10.668 -5.941 -9.148 15.257 Atomic orbital electron populations 1.69918 1.08918 1.30187 1.35803 1.26705 0.95466 1.04258 0.91209 0.85309 0.78857 0.75869 0.79971 1.18626 1.19108 1.18457 1.19796 0.98296 0.92761 1.42734 0.91001 1.17712 0.90985 0.92820 0.87894 1.21027 1.05852 0.93373 1.10377 1.20646 0.94631 0.96914 0.95953 1.20217 1.04387 0.95128 1.12945 1.17773 0.86984 0.93725 0.89732 1.44520 1.30708 1.08031 1.55232 1.21157 0.93216 0.86599 0.96958 1.21980 0.96222 0.99274 0.96706 0.91206 1.21532 0.97332 0.95803 1.00133 1.22204 0.97514 1.02315 0.96856 1.22102 0.97877 0.91105 0.96401 1.60662 1.12373 1.12495 1.46608 1.21941 0.93573 1.00261 0.90349 1.20661 1.03676 0.95442 1.08684 0.90436 0.89190 0.86397 0.87107 0.77482 0.93201 0.93714 0.91353 0.91430 0.91892 0.89825 0.89472 0.91180 0.83754 0.91924 0.91388 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.31 10.96 21.82 0.24 -44.07 16 2 C 0.04 2.01 5.14 85.25 0.44 2.45 16 3 Si 0.98 39.51 29.60 68.60 2.03 41.55 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.51 -28.69 9.05 23.46 0.21 -28.48 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 10 C -0.29 -14.96 9.79 22.75 0.22 -14.74 16 11 C -0.06 -2.91 10.01 22.20 0.22 -2.68 16 12 C -0.30 -13.71 9.32 22.59 0.21 -13.50 16 13 C 0.22 10.35 6.64 38.17 0.25 10.61 16 14 N -0.75 -28.21 5.47 -339.57 -1.86 -30.07 16 15 C 0.15 4.25 4.30 86.38 0.37 4.62 16 16 C -0.12 -2.71 2.37 -10.74 -0.03 -2.73 16 17 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.11 -1.96 5.29 30.67 0.16 -1.80 16 19 C -0.15 -2.16 6.08 30.65 0.19 -1.97 16 20 C 0.05 0.85 6.55 86.33 0.57 1.41 16 21 N -0.69 -13.65 6.87 -514.02 -3.53 -17.18 16 22 C 0.07 1.58 5.70 86.33 0.49 2.07 16 23 C -0.26 -14.19 8.53 22.86 0.20 -14.00 16 24 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 25 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.11 4.35 6.70 -2.91 -0.02 4.34 16 28 H 0.39 14.20 7.67 -92.71 -0.71 13.49 16 29 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 30 H 0.04 1.35 7.93 -2.39 -0.02 1.33 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.34 6.19 8.86 -89.69 -0.79 5.40 16 38 H 0.06 1.64 7.21 -2.39 -0.02 1.62 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.10 5.65 6.16 -2.91 -0.02 5.64 16 Total: -1.00 -61.74 318.49 -0.20 -61.94 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.47 Total: 40.47 kcal Atomic # 6 Polarization: -56.03 SS G_CDS: 3.39 Total: -52.64 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -5.15 Total: -91.32 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.74 -0.20 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.512 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds