Wall clock time and date at job start Mon Mar 30 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48495 * 109.47558 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46843 * 120.00362 * 3 2 1 6 6 H 1.48506 * 109.46956 * 239.99507 * 3 2 1 7 7 C 1.39934 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99352 * 162.27679 * 7 2 1 9 9 C 1.41401 * 120.00467 * 342.27049 * 7 2 1 10 10 C 1.40785 * 120.21018 * 155.66651 * 9 7 2 11 11 C 1.37640 * 119.89890 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32345 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42302 * 0.02562 * 12 11 10 14 14 N 1.39681 * 119.95041 * 180.02562 * 13 12 11 15 15 C 1.46496 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47252 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.50253 * 54.99487 * 16 15 14 18 18 C 1.53113 * 109.50393 * 175.07768 * 16 15 14 19 19 C 1.53124 * 109.16039 * 177.55804 * 18 16 15 20 20 C 1.53036 * 109.30815 * 302.40705 * 19 18 16 21 21 N 1.46842 * 109.53012 * 59.15611 * 20 19 18 22 22 C 1.46847 * 111.19539 * 298.26245 * 21 20 19 23 23 C 1.38327 * 120.09464 * 359.71318 * 13 12 11 24 24 H 0.96999 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.05142 * 359.97438 * 10 9 7 26 26 H 1.07993 * 119.83871 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.78737 * 180.02562 * 12 11 10 28 28 H 0.97003 * 119.99882 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.46916 * 299.99930 * 15 14 13 30 30 H 1.09001 * 109.47582 * 59.99773 * 15 14 13 31 31 H 1.09002 * 109.52321 * 297.49571 * 18 16 15 32 32 H 1.08996 * 109.52727 * 57.69363 * 18 16 15 33 33 H 1.09001 * 109.50690 * 182.44175 * 19 18 16 34 34 H 1.09003 * 109.50256 * 62.36208 * 19 18 16 35 35 H 1.09005 * 109.46101 * 299.13450 * 20 19 18 36 36 H 1.09009 * 109.46537 * 179.17650 * 20 19 18 37 37 H 1.00905 * 110.99830 * 62.34929 * 21 20 19 38 38 H 1.09003 * 109.46126 * 301.72368 * 22 21 20 39 39 H 1.09000 * 109.46625 * 181.75478 * 22 21 20 40 40 H 1.07994 * 120.15899 * 180.27529 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2853 9 6 1.3513 -2.4076 0.3718 10 6 1.8274 -3.6501 -0.0882 11 6 1.1830 -4.8099 0.2777 12 6 0.0675 -4.7614 1.0977 13 6 -0.4150 -3.5394 1.5607 14 7 -1.5403 -3.5020 2.3874 15 6 -2.2117 -4.7473 2.7675 16 6 -3.4052 -4.4284 3.6702 17 1 -4.0610 -3.7169 3.1684 18 6 -4.1793 -5.7154 3.9679 19 6 -5.3354 -5.3975 4.9204 20 6 -4.7792 -4.7643 6.1977 21 7 -4.0486 -3.5364 5.8591 22 6 -2.9049 -3.8233 4.9839 23 6 0.2223 -2.3635 1.2080 24 1 -0.4850 0.8400 0.0004 25 1 2.6964 -3.6930 -0.7281 26 1 1.5492 -5.7625 -0.0754 27 1 -0.4312 -5.6768 1.3799 28 1 -1.8767 -2.6515 2.7105 29 1 -2.5604 -5.2603 1.8712 30 1 -1.5120 -5.3884 3.3039 31 1 -4.5746 -6.1259 3.0388 32 1 -3.5134 -6.4415 4.4340 33 1 -5.8643 -6.3172 5.1705 34 1 -6.0228 -4.7019 4.4389 35 1 -4.1032 -5.4661 6.6863 36 1 -5.6015 -4.5236 6.8717 37 1 -4.6627 -2.8544 5.4396 38 1 -2.2376 -4.5295 5.4781 39 1 -2.3658 -2.8991 4.7760 40 1 -0.1482 -1.4159 1.5700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313408938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:54 Heat of formation + Delta-G solvation = 2.536996 kcal Electronic energy + Delta-G solvation = -19043.629501 eV Core-core repulsion = 16242.522026 eV Total energy + Delta-G solvation = -2801.107475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.24893 -37.63199 -35.05644 -33.37161 -32.01869 -31.17302 -29.39735 -27.79487 -25.25106 -24.75760 -23.72227 -21.81854 -20.96440 -20.12014 -19.76931 -17.16565 -16.25795 -15.62348 -15.41801 -14.93999 -14.72610 -14.72057 -14.26356 -13.76383 -13.12584 -13.03024 -12.74515 -12.50246 -12.25244 -12.22998 -11.88740 -11.49220 -11.39362 -11.32798 -11.04030 -10.97560 -10.69500 -10.57475 -10.47946 -10.37867 -9.58887 -9.42018 -9.20755 -8.73591 -8.43622 -7.27795 -6.70008 -6.12956 -4.28194 2.91304 3.10908 3.14459 3.26292 3.37705 4.00156 4.16503 4.26262 4.61708 4.73127 4.75321 4.90810 4.91229 5.19906 5.30477 5.44160 5.48659 5.69324 5.72988 5.75312 5.86238 5.87729 5.97974 6.08433 6.14864 6.30462 6.31602 6.61795 6.88490 6.91215 7.14389 7.17045 7.24117 7.41006 7.47593 7.84453 7.99550 8.13902 8.20503 8.52328 8.73940 8.87196 9.04512 9.15423 10.28790 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.004459 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.270153 B = 6277.981682 C = 7151.068284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.216 3.784 14 N -0.760 5.760 15 C 0.147 3.853 16 C -0.134 4.134 17 H 0.072 0.928 18 C -0.112 4.112 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.063 3.937 23 C -0.232 4.232 24 H 0.277 0.723 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.388 0.612 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.339 0.661 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -6.132 8.786 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.117 3.883 14 N -0.394 5.394 15 C 0.021 3.979 16 C -0.155 4.155 17 H 0.091 0.909 18 C -0.150 4.150 19 C -0.196 4.196 20 C -0.074 4.074 21 N -0.314 5.314 22 C -0.067 4.067 23 C -0.256 4.256 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.222 0.778 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.446 -6.170 9.382 14.674 hybrid contribution -0.319 0.800 -0.947 1.280 sum -9.765 -5.370 8.435 13.976 Atomic orbital electron populations 1.69863 1.07506 1.28835 1.35716 1.25868 0.94664 1.01052 0.92292 0.86442 0.80201 0.80546 0.79909 1.20484 1.18905 1.19103 1.19525 0.98016 0.91326 1.40728 0.90642 1.17309 0.90125 0.91799 0.87155 1.20860 1.04761 0.92951 1.09230 1.20280 0.95138 0.96234 0.96880 1.19877 1.04465 0.94373 1.13548 1.17646 0.86257 0.94305 0.90082 1.44415 1.31795 1.06319 1.56876 1.20972 0.92243 0.88276 0.96454 1.22087 0.97571 0.98172 0.97640 0.90921 1.21530 0.96937 0.97057 0.99473 1.22258 0.98160 1.01508 0.97673 1.22030 0.97641 0.91867 0.95900 1.60682 1.12094 1.11401 1.47266 1.22093 0.93072 1.01327 0.90187 1.20722 1.02592 0.95037 1.07215 0.91180 0.89426 0.89694 0.89763 0.77820 0.93513 0.93365 0.91739 0.91626 0.91521 0.92071 0.90996 0.90996 0.84331 0.90816 0.90210 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.88 10.96 55.55 0.61 -20.27 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 10 C -0.26 -6.61 9.79 -38.84 -0.38 -6.99 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.30 -6.93 9.32 -39.08 -0.36 -7.30 16 13 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16 14 N -0.76 -14.36 5.47 -58.69 -0.32 -14.68 16 15 C 0.15 2.24 4.30 -4.04 -0.02 2.23 16 16 C -0.13 -1.60 2.37 -90.54 -0.21 -1.82 16 17 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -1.14 5.29 -26.61 -0.14 -1.28 16 19 C -0.16 -1.36 6.08 -26.65 -0.16 -1.52 16 20 C 0.06 0.50 6.55 -3.84 -0.03 0.48 16 21 N -0.69 -7.33 6.87 -113.81 -0.78 -8.11 16 22 C 0.06 0.75 5.70 -3.83 -0.02 0.73 16 23 C -0.23 -6.12 8.53 -38.67 -0.33 -6.45 16 24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 26 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.76 6.70 -52.49 -0.35 1.41 16 28 H 0.39 6.99 7.67 -40.82 -0.31 6.68 16 29 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 30 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.34 3.32 8.86 -39.29 -0.35 2.98 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.05 7.21 -51.93 -0.37 0.68 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -28.19 318.50 -10.67 -38.86 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.31 Total: 12.63 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.64 Total: -27.26 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.49 Total: -43.06 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.19 -10.67 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.401 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds