Wall clock time and date at job start Mon Mar 30 2020 06:38:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30837 * 1
3 3 Si 1.86793 * 119.99825 * 2 1
4 4 H 1.48495 * 109.47558 * 0.02562 * 3 2 1
5 5 H 1.48504 * 109.46843 * 120.00362 * 3 2 1
6 6 H 1.48506 * 109.46956 * 239.99507 * 3 2 1
7 7 C 1.39934 * 119.99548 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99352 * 162.27679 * 7 2 1
9 9 C 1.41401 * 120.00467 * 342.27049 * 7 2 1
10 10 C 1.40785 * 120.21018 * 155.66651 * 9 7 2
11 11 C 1.37640 * 119.89890 * 180.02562 * 10 9 7
12 12 C 1.38530 * 120.32345 * 359.97438 * 11 10 9
13 13 C 1.39294 * 120.42302 * 0.02562 * 12 11 10
14 14 N 1.39681 * 119.95041 * 180.02562 * 13 12 11
15 15 C 1.46496 * 120.00139 * 0.02562 * 14 13 12
16 16 C 1.53000 * 109.47252 * 179.97438 * 15 14 13
17 17 H 1.09002 * 109.50253 * 54.99487 * 16 15 14
18 18 C 1.53113 * 109.50393 * 175.07768 * 16 15 14
19 19 C 1.53124 * 109.16039 * 177.55804 * 18 16 15
20 20 C 1.53036 * 109.30815 * 302.40705 * 19 18 16
21 21 N 1.46842 * 109.53012 * 59.15611 * 20 19 18
22 22 C 1.46847 * 111.19539 * 298.26245 * 21 20 19
23 23 C 1.38327 * 120.09464 * 359.71318 * 13 12 11
24 24 H 0.96999 * 119.99873 * 359.97438 * 1 2 3
25 25 H 1.08005 * 120.05142 * 359.97438 * 10 9 7
26 26 H 1.07993 * 119.83871 * 180.02562 * 11 10 9
27 27 H 1.07996 * 119.78737 * 180.02562 * 12 11 10
28 28 H 0.97003 * 119.99882 * 179.97438 * 14 13 12
29 29 H 1.08999 * 109.46916 * 299.99930 * 15 14 13
30 30 H 1.09001 * 109.47582 * 59.99773 * 15 14 13
31 31 H 1.09002 * 109.52321 * 297.49571 * 18 16 15
32 32 H 1.08996 * 109.52727 * 57.69363 * 18 16 15
33 33 H 1.09001 * 109.50690 * 182.44175 * 19 18 16
34 34 H 1.09003 * 109.50256 * 62.36208 * 19 18 16
35 35 H 1.09005 * 109.46101 * 299.13450 * 20 19 18
36 36 H 1.09009 * 109.46537 * 179.17650 * 20 19 18
37 37 H 1.00905 * 110.99830 * 62.34929 * 21 20 19
38 38 H 1.09003 * 109.46126 * 301.72368 * 22 21 20
39 39 H 1.09000 * 109.46625 * 181.75478 * 22 21 20
40 40 H 1.07994 * 120.15899 * 180.27529 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3084 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 1.2774 2.7464 0.0006
5 1 3.0961 1.6963 1.2125
6 1 3.0961 1.6963 -1.2125
7 6 2.0079 -1.2119 -0.0005
8 1 3.0495 -1.2340 -0.2853
9 6 1.3513 -2.4076 0.3718
10 6 1.8274 -3.6501 -0.0882
11 6 1.1830 -4.8099 0.2777
12 6 0.0675 -4.7614 1.0977
13 6 -0.4150 -3.5394 1.5607
14 7 -1.5403 -3.5020 2.3874
15 6 -2.2117 -4.7473 2.7675
16 6 -3.4052 -4.4284 3.6702
17 1 -4.0610 -3.7169 3.1684
18 6 -4.1793 -5.7154 3.9679
19 6 -5.3354 -5.3975 4.9204
20 6 -4.7792 -4.7643 6.1977
21 7 -4.0486 -3.5364 5.8591
22 6 -2.9049 -3.8233 4.9839
23 6 0.2223 -2.3635 1.2080
24 1 -0.4850 0.8400 0.0004
25 1 2.6964 -3.6930 -0.7281
26 1 1.5492 -5.7625 -0.0754
27 1 -0.4312 -5.6768 1.3799
28 1 -1.8767 -2.6515 2.7105
29 1 -2.5604 -5.2603 1.8712
30 1 -1.5120 -5.3884 3.3039
31 1 -4.5746 -6.1259 3.0388
32 1 -3.5134 -6.4415 4.4340
33 1 -5.8643 -6.3172 5.1705
34 1 -6.0228 -4.7019 4.4389
35 1 -4.1032 -5.4661 6.6863
36 1 -5.6015 -4.5236 6.8717
37 1 -4.6627 -2.8544 5.4396
38 1 -2.2376 -4.5295 5.4781
39 1 -2.3658 -2.8991 4.7760
40 1 -0.1482 -1.4159 1.5700
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000313408938.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:54
Heat of formation + Delta-G solvation = 2.536996 kcal
Electronic energy + Delta-G solvation = -19043.629501 eV
Core-core repulsion = 16242.522026 eV
Total energy + Delta-G solvation = -2801.107475 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.24893 -37.63199 -35.05644 -33.37161 -32.01869 -31.17302 -29.39735 -27.79487
-25.25106 -24.75760 -23.72227 -21.81854 -20.96440 -20.12014 -19.76931 -17.16565
-16.25795 -15.62348 -15.41801 -14.93999 -14.72610 -14.72057 -14.26356 -13.76383
-13.12584 -13.03024 -12.74515 -12.50246 -12.25244 -12.22998 -11.88740 -11.49220
-11.39362 -11.32798 -11.04030 -10.97560 -10.69500 -10.57475 -10.47946 -10.37867
-9.58887 -9.42018 -9.20755 -8.73591 -8.43622 -7.27795 -6.70008 -6.12956
-4.28194 2.91304 3.10908 3.14459 3.26292 3.37705 4.00156 4.16503
4.26262 4.61708 4.73127 4.75321 4.90810 4.91229 5.19906 5.30477
5.44160 5.48659 5.69324 5.72988 5.75312 5.86238 5.87729 5.97974
6.08433 6.14864 6.30462 6.31602 6.61795 6.88490 6.91215 7.14389
7.17045 7.24117 7.41006 7.47593 7.84453 7.99550 8.13902 8.20503
8.52328 8.73940 8.87196 9.04512 9.15423 10.28790
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.024680 B = 0.004459 C = 0.003915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1134.270153 B = 6277.981682 C = 7151.068284
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.794 5.794
2 C 0.079 3.921
3 Si 0.904 3.096
4 H -0.280 1.280
5 H -0.264 1.264
6 H -0.266 1.266
7 C -0.466 4.466
8 H 0.075 0.925
9 C 0.139 3.861
10 C -0.258 4.258
11 C -0.066 4.066
12 C -0.300 4.300
13 C 0.216 3.784
14 N -0.760 5.760
15 C 0.147 3.853
16 C -0.134 4.134
17 H 0.072 0.928
18 C -0.112 4.112
19 C -0.157 4.157
20 C 0.055 3.945
21 N -0.687 5.687
22 C 0.063 3.937
23 C -0.232 4.232
24 H 0.277 0.723
25 H 0.087 0.913
26 H 0.085 0.915
27 H 0.084 0.916
28 H 0.388 0.612
29 H 0.047 0.953
30 H 0.048 0.952
31 H 0.064 0.936
32 H 0.065 0.935
33 H 0.066 0.934
34 H 0.061 0.939
35 H 0.072 0.928
36 H 0.072 0.928
37 H 0.339 0.661
38 H 0.073 0.927
39 H 0.080 0.920
40 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.586 -6.132 8.786 14.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.419 5.419
2 C -0.139 4.139
3 Si 0.729 3.271
4 H -0.205 1.205
5 H -0.189 1.189
6 H -0.191 1.191
7 C -0.496 4.496
8 H 0.094 0.906
9 C 0.136 3.864
10 C -0.278 4.278
11 C -0.085 4.085
12 C -0.323 4.323
13 C 0.117 3.883
14 N -0.394 5.394
15 C 0.021 3.979
16 C -0.155 4.155
17 H 0.091 0.909
18 C -0.150 4.150
19 C -0.196 4.196
20 C -0.074 4.074
21 N -0.314 5.314
22 C -0.067 4.067
23 C -0.256 4.256
24 H 0.088 0.912
25 H 0.106 0.894
26 H 0.103 0.897
27 H 0.102 0.898
28 H 0.222 0.778
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.083 0.917
32 H 0.084 0.916
33 H 0.085 0.915
34 H 0.079 0.921
35 H 0.090 0.910
36 H 0.090 0.910
37 H 0.157 0.843
38 H 0.092 0.908
39 H 0.098 0.902
40 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -9.446 -6.170 9.382 14.674
hybrid contribution -0.319 0.800 -0.947 1.280
sum -9.765 -5.370 8.435 13.976
Atomic orbital electron populations
1.69863 1.07506 1.28835 1.35716 1.25868 0.94664 1.01052 0.92292
0.86442 0.80201 0.80546 0.79909 1.20484 1.18905 1.19103 1.19525
0.98016 0.91326 1.40728 0.90642 1.17309 0.90125 0.91799 0.87155
1.20860 1.04761 0.92951 1.09230 1.20280 0.95138 0.96234 0.96880
1.19877 1.04465 0.94373 1.13548 1.17646 0.86257 0.94305 0.90082
1.44415 1.31795 1.06319 1.56876 1.20972 0.92243 0.88276 0.96454
1.22087 0.97571 0.98172 0.97640 0.90921 1.21530 0.96937 0.97057
0.99473 1.22258 0.98160 1.01508 0.97673 1.22030 0.97641 0.91867
0.95900 1.60682 1.12094 1.11401 1.47266 1.22093 0.93072 1.01327
0.90187 1.20722 1.02592 0.95037 1.07215 0.91180 0.89426 0.89694
0.89763 0.77820 0.93513 0.93365 0.91739 0.91626 0.91521 0.92071
0.90996 0.90996 0.84331 0.90816 0.90210 0.86573
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.88 10.96 55.55 0.61 -20.27 16
2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16
3 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16
4 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16
5 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16
6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16
8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16
9 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16
10 C -0.26 -6.61 9.79 -38.84 -0.38 -6.99 16
11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16
12 C -0.30 -6.93 9.32 -39.08 -0.36 -7.30 16
13 C 0.22 5.08 6.64 -83.86 -0.56 4.52 16
14 N -0.76 -14.36 5.47 -58.69 -0.32 -14.68 16
15 C 0.15 2.24 4.30 -4.04 -0.02 2.23 16
16 C -0.13 -1.60 2.37 -90.54 -0.21 -1.82 16
17 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
18 C -0.11 -1.14 5.29 -26.61 -0.14 -1.28 16
19 C -0.16 -1.36 6.08 -26.65 -0.16 -1.52 16
20 C 0.06 0.50 6.55 -3.84 -0.03 0.48 16
21 N -0.69 -7.33 6.87 -113.81 -0.78 -8.11 16
22 C 0.06 0.75 5.70 -3.83 -0.02 0.73 16
23 C -0.23 -6.12 8.53 -38.67 -0.33 -6.45 16
24 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16
25 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16
26 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16
27 H 0.08 1.76 6.70 -52.49 -0.35 1.41 16
28 H 0.39 6.99 7.67 -40.82 -0.31 6.68 16
29 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16
30 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16
37 H 0.34 3.32 8.86 -39.29 -0.35 2.98 16
38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
39 H 0.08 1.05 7.21 -51.93 -0.37 0.68 16
40 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16
LS Contribution 318.50 15.07 4.80 4.80
Total: -1.00 -28.19 318.50 -10.67 -38.86
By element:
Atomic # 1 Polarization: 18.94 SS G_CDS: -6.31 Total: 12.63 kcal
Atomic # 6 Polarization: -23.62 SS G_CDS: -3.64 Total: -27.26 kcal
Atomic # 7 Polarization: -42.56 SS G_CDS: -0.49 Total: -43.06 kcal
Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -28.19 -10.67 -38.86 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313408938.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.401 kcal
(2) G-P(sol) polarization free energy of solvation -28.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.537 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds