Wall clock time and date at job start Mon Mar 30 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48495 * 109.47558 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46843 * 120.00362 * 3 2 1 6 6 H 1.48506 * 109.46956 * 239.99507 * 3 2 1 7 7 C 1.39934 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99352 * 162.27679 * 7 2 1 9 9 C 1.41401 * 120.00467 * 342.27049 * 7 2 1 10 10 C 1.40785 * 120.21018 * 155.66651 * 9 7 2 11 11 C 1.37640 * 119.89890 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32345 * 359.97438 * 11 10 9 13 13 C 1.39294 * 120.42302 * 0.02562 * 12 11 10 14 14 N 1.39681 * 119.95041 * 180.02562 * 13 12 11 15 15 C 1.46496 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47252 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.50253 * 54.99487 * 16 15 14 18 18 C 1.53113 * 109.50393 * 175.07768 * 16 15 14 19 19 C 1.53124 * 109.16039 * 177.55804 * 18 16 15 20 20 C 1.53036 * 109.30815 * 302.40705 * 19 18 16 21 21 N 1.46842 * 109.53012 * 59.15611 * 20 19 18 22 22 C 1.46847 * 111.19539 * 298.26245 * 21 20 19 23 23 C 1.38327 * 120.09464 * 359.71318 * 13 12 11 24 24 H 0.96999 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.05142 * 359.97438 * 10 9 7 26 26 H 1.07993 * 119.83871 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.78737 * 180.02562 * 12 11 10 28 28 H 0.97003 * 119.99882 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.46916 * 299.99930 * 15 14 13 30 30 H 1.09001 * 109.47582 * 59.99773 * 15 14 13 31 31 H 1.09002 * 109.52321 * 297.49571 * 18 16 15 32 32 H 1.08996 * 109.52727 * 57.69363 * 18 16 15 33 33 H 1.09001 * 109.50690 * 182.44175 * 19 18 16 34 34 H 1.09003 * 109.50256 * 62.36208 * 19 18 16 35 35 H 1.09005 * 109.46101 * 299.13450 * 20 19 18 36 36 H 1.09009 * 109.46537 * 179.17650 * 20 19 18 37 37 H 1.00905 * 110.99830 * 62.34929 * 21 20 19 38 38 H 1.09003 * 109.46126 * 301.72368 * 22 21 20 39 39 H 1.09000 * 109.46625 * 181.75478 * 22 21 20 40 40 H 1.07994 * 120.15899 * 180.27529 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2853 9 6 1.3513 -2.4076 0.3718 10 6 1.8274 -3.6501 -0.0882 11 6 1.1830 -4.8099 0.2777 12 6 0.0675 -4.7614 1.0977 13 6 -0.4150 -3.5394 1.5607 14 7 -1.5403 -3.5020 2.3874 15 6 -2.2117 -4.7473 2.7675 16 6 -3.4052 -4.4284 3.6702 17 1 -4.0610 -3.7169 3.1684 18 6 -4.1793 -5.7154 3.9679 19 6 -5.3354 -5.3975 4.9204 20 6 -4.7792 -4.7643 6.1977 21 7 -4.0486 -3.5364 5.8591 22 6 -2.9049 -3.8233 4.9839 23 6 0.2223 -2.3635 1.2080 24 1 -0.4850 0.8400 0.0004 25 1 2.6964 -3.6930 -0.7281 26 1 1.5492 -5.7625 -0.0754 27 1 -0.4312 -5.6768 1.3799 28 1 -1.8767 -2.6515 2.7105 29 1 -2.5604 -5.2603 1.8712 30 1 -1.5120 -5.3884 3.3039 31 1 -4.5746 -6.1259 3.0388 32 1 -3.5134 -6.4415 4.4340 33 1 -5.8643 -6.3172 5.1705 34 1 -6.0228 -4.7019 4.4389 35 1 -4.1032 -5.4661 6.6863 36 1 -5.6015 -4.5236 6.8717 37 1 -4.6627 -2.8544 5.4396 38 1 -2.2376 -4.5295 5.4781 39 1 -2.3658 -2.8991 4.7760 40 1 -0.1482 -1.4159 1.5700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:54 Heat of formation + Delta-G solvation = -14.486101 kcal Electronic energy + Delta-G solvation = -19044.367678 eV Core-core repulsion = 16242.522026 eV Total energy + Delta-G solvation = -2801.845652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29230 -39.33465 -36.60572 -35.18543 -33.11438 -32.19856 -31.33946 -29.37223 -27.14827 -26.09881 -24.59829 -23.15747 -22.44968 -21.53183 -21.15056 -19.05993 -17.68716 -16.91991 -16.52881 -16.44112 -16.36849 -15.99652 -15.56183 -14.84701 -14.58359 -14.48972 -14.23701 -14.00262 -13.72883 -13.42628 -13.12921 -12.93788 -12.84211 -12.72822 -12.42606 -12.22285 -12.16734 -12.01063 -11.61196 -11.57720 -11.35676 -11.26691 -11.06377 -10.49745 -9.29144 -9.25347 -8.61919 -7.90746 -6.32112 1.09541 1.33387 1.38725 1.49920 1.60000 2.23354 2.78619 2.84142 3.33393 3.71427 3.85030 3.86521 3.92847 4.11237 4.31846 4.43190 4.50113 4.53933 4.63186 4.72968 4.74576 4.80718 4.96419 4.98757 5.00554 5.09575 5.13066 5.19102 5.20258 5.30732 5.37774 5.45080 5.60519 5.96053 6.04846 6.10821 6.21480 6.25887 6.44871 6.58183 6.94054 7.04983 7.06637 7.24798 8.38488 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.004459 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.270153 B = 6277.981682 C = 7151.068284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.109 3.891 10 C -0.286 4.286 11 C -0.063 4.063 12 C -0.304 4.304 13 C 0.219 3.781 14 N -0.753 5.753 15 C 0.146 3.854 16 C -0.121 4.121 17 H 0.069 0.931 18 C -0.110 4.110 19 C -0.150 4.150 20 C 0.054 3.946 21 N -0.693 5.693 22 C 0.069 3.931 23 C -0.260 4.260 24 H 0.285 0.715 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.391 0.609 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 -6.774 9.644 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.306 4.306 11 C -0.081 4.081 12 C -0.327 4.327 13 C 0.118 3.882 14 N -0.385 5.385 15 C 0.021 3.979 16 C -0.142 4.142 17 H 0.088 0.912 18 C -0.148 4.148 19 C -0.189 4.189 20 C -0.075 4.075 21 N -0.321 5.321 22 C -0.061 4.061 23 C -0.285 4.285 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.659 -6.837 10.260 16.298 hybrid contribution -0.038 0.883 -1.168 1.465 sum -10.697 -5.954 9.092 15.249 Atomic orbital electron populations 1.69920 1.08917 1.30184 1.35827 1.26708 0.95472 1.04264 0.91204 0.85307 0.78852 0.75861 0.79971 1.19105 1.18635 1.18446 1.19797 0.98232 0.92740 1.42813 0.91005 1.17707 0.91013 0.92817 0.87862 1.21027 1.05733 0.93381 1.10493 1.20649 0.94643 0.96912 0.95936 1.20217 1.04367 0.95101 1.12992 1.17776 0.86921 0.93726 0.89784 1.44522 1.30481 1.08022 1.55467 1.21155 0.93202 0.86585 0.96986 1.21976 0.96197 0.99277 0.96729 0.91211 1.21531 0.97311 0.95804 1.00154 1.22205 0.97506 1.02317 0.96860 1.22104 0.97891 0.91101 0.96392 1.60671 1.12213 1.12473 1.46773 1.21942 0.93547 1.00267 0.90371 1.20660 1.03608 0.95458 1.08727 0.90439 0.89190 0.86394 0.87105 0.77482 0.93713 0.93204 0.91422 0.91359 0.89827 0.91894 0.91181 0.89470 0.83756 0.91388 0.91923 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.32 10.96 21.82 0.24 -44.08 16 2 C 0.04 2.00 5.14 85.25 0.44 2.44 16 3 Si 0.98 39.52 29.59 68.60 2.03 41.55 16 4 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.51 -28.69 9.05 23.46 0.21 -28.47 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.11 6.22 5.57 -21.31 -0.12 6.10 16 10 C -0.29 -14.96 9.79 22.75 0.22 -14.74 16 11 C -0.06 -2.90 10.02 22.20 0.22 -2.68 16 12 C -0.30 -13.71 9.32 22.59 0.21 -13.50 16 13 C 0.22 10.36 6.64 38.17 0.25 10.61 16 14 N -0.75 -28.22 5.47 -339.58 -1.86 -30.08 16 15 C 0.15 4.25 4.30 86.38 0.37 4.62 16 16 C -0.12 -2.71 2.37 -10.74 -0.03 -2.73 16 17 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.11 -1.96 5.29 30.67 0.16 -1.80 16 19 C -0.15 -2.16 6.08 30.65 0.19 -1.97 16 20 C 0.05 0.85 6.55 86.33 0.57 1.41 16 21 N -0.69 -13.65 6.87 -513.99 -3.53 -17.18 16 22 C 0.07 1.58 5.70 86.33 0.49 2.07 16 23 C -0.26 -14.19 8.53 22.86 0.20 -13.99 16 24 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 25 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.11 4.35 6.70 -2.91 -0.02 4.34 16 28 H 0.39 14.21 7.67 -92.71 -0.71 13.50 16 29 H 0.04 1.35 7.94 -2.39 -0.02 1.33 16 30 H 0.05 1.47 7.94 -2.39 -0.02 1.45 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 37 H 0.34 6.19 8.86 -89.69 -0.79 5.40 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.64 7.21 -2.39 -0.02 1.62 16 40 H 0.10 5.64 6.16 -2.91 -0.02 5.63 16 Total: -1.00 -61.74 318.50 -0.20 -61.94 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.47 Total: 40.47 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.39 Total: -52.63 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -5.15 Total: -91.34 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.74 -0.20 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.459 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds