Wall clock time and date at job start Mon Mar 30 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86794 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46951 * 299.99241 * 3 2 1 6 6 H 1.48499 * 109.47487 * 59.99265 * 3 2 1 7 7 C 1.39933 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 197.89174 * 7 2 1 9 9 C 1.41412 * 119.99632 * 17.89413 * 7 2 1 10 10 C 1.40783 * 120.20567 * 204.41392 * 9 7 2 11 11 C 1.37639 * 119.89503 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32636 * 359.74104 * 11 10 9 13 13 C 1.39294 * 120.42182 * 0.51408 * 12 11 10 14 14 N 1.39676 * 119.95199 * 179.76071 * 13 12 11 15 15 C 1.46502 * 120.00266 * 359.72968 * 14 13 12 16 16 C 1.52999 * 109.47018 * 204.99960 * 15 14 13 17 17 C 1.53005 * 109.46960 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47265 * 59.99330 * 17 16 15 19 19 N 1.46903 * 109.47246 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47475 * 300.00556 * 18 17 16 21 21 C 1.52992 * 109.47184 * 59.99567 * 20 18 17 22 22 C 1.38318 * 120.09280 * 359.48780 * 13 12 11 23 23 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05415 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.83852 * 180.02562 * 11 10 9 26 26 H 1.07999 * 119.79189 * 180.27774 * 12 11 10 27 27 H 0.97008 * 120.00296 * 179.72880 * 14 13 12 28 28 H 1.08999 * 109.46783 * 324.99296 * 15 14 13 29 29 H 1.09003 * 109.47276 * 299.99208 * 16 15 14 30 30 H 1.09000 * 109.47322 * 60.00014 * 16 15 14 31 31 H 1.09001 * 109.46977 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.46486 * 299.99700 * 17 16 15 33 33 H 1.09003 * 109.47066 * 60.00726 * 18 17 16 34 34 H 1.00900 * 110.99907 * 300.00594 * 19 18 17 35 35 H 1.00907 * 110.99707 * 63.95444 * 19 18 17 36 36 H 1.09004 * 109.46642 * 299.99532 * 20 18 17 37 37 H 1.09005 * 109.47104 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47350 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.47359 * 60.00405 * 21 20 18 40 40 H 1.08007 * 120.15840 * 180.22537 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8837 2.3963 -1.2127 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2879 9 6 1.3522 -2.4070 -0.3752 10 6 1.8261 -3.6500 0.0856 11 6 1.1832 -4.8094 -0.2846 12 6 0.0679 -4.7594 -1.1046 13 6 -0.4093 -3.5373 -1.5726 14 7 -1.5318 -3.4988 -2.4030 15 6 -2.2027 -4.7435 -2.7861 16 6 -2.9430 -4.5375 -4.1091 17 6 -3.6432 -5.8377 -4.5095 18 6 -4.6433 -6.2343 -3.4218 19 7 -5.3160 -7.4823 -3.8065 20 6 -3.9030 -6.4402 -2.0987 21 6 -3.2029 -5.1401 -1.6984 22 6 0.2233 -2.3615 -1.2115 23 1 -0.4850 0.8401 -0.0004 24 1 2.6933 -3.6939 0.7279 25 1 1.5473 -5.7624 0.0698 26 1 -0.4326 -5.6741 -1.3861 27 1 -1.8671 -2.6478 -2.7262 28 1 -1.4618 -5.5343 -2.9037 29 1 -3.6840 -3.7468 -3.9916 30 1 -2.2304 -4.2555 -4.8842 31 1 -4.1710 -5.6908 -5.4519 32 1 -2.9019 -6.6281 -4.6272 33 1 -5.3846 -5.4438 -3.3041 34 1 -5.8126 -7.3716 -4.6778 35 1 -4.6586 -8.2459 -3.8594 36 1 -3.1618 -7.2307 -2.2164 37 1 -4.6156 -6.7231 -1.3239 38 1 -2.6751 -5.2869 -0.7561 39 1 -3.9441 -4.3495 -1.5807 40 1 -0.1480 -1.4131 -1.5708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313410316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:31 Heat of formation + Delta-G solvation = -2.104470 kcal Electronic energy + Delta-G solvation = -19264.193510 eV Core-core repulsion = 16462.884766 eV Total energy + Delta-G solvation = -2801.308744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.18127 -37.44872 -35.01987 -33.40605 -31.92917 -30.78159 -29.39345 -28.31251 -25.83293 -25.15176 -22.67048 -21.70129 -20.93656 -19.90504 -19.61701 -17.18424 -16.27908 -15.69064 -15.44614 -14.95967 -14.68948 -14.35457 -14.18171 -13.47637 -13.30793 -12.97659 -12.69196 -12.39531 -12.17221 -12.14358 -11.68202 -11.40256 -11.20813 -11.15324 -11.01524 -10.95872 -10.63266 -10.50608 -10.26799 -10.13140 -9.57031 -9.39629 -9.20907 -8.83514 -8.70531 -7.27452 -6.70195 -6.12184 -4.28165 2.87837 3.11587 3.17360 3.26338 3.36330 3.99935 4.17420 4.50488 4.65923 4.72743 4.77730 5.16334 5.17506 5.30758 5.49480 5.52492 5.56858 5.75358 5.85396 5.87395 6.01271 6.06054 6.13392 6.30734 6.31869 6.46071 6.53915 6.68005 6.92419 6.97431 7.15284 7.17402 7.25366 7.42061 7.48145 7.85646 7.99876 8.14978 8.21178 8.52910 8.75883 8.87939 9.04700 9.15862 10.28387 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.004391 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.253723 B = 6375.732051 C = 6859.724830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.300 4.300 13 C 0.218 3.782 14 N -0.756 5.756 15 C 0.163 3.837 16 C -0.122 4.122 17 C -0.147 4.147 18 C 0.089 3.911 19 N -0.847 5.847 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.232 4.232 23 H 0.276 0.724 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.388 0.612 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.338 0.662 35 H 0.338 0.662 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -7.745 -7.835 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.086 4.086 12 C -0.322 4.322 13 C 0.119 3.881 14 N -0.388 5.388 15 C 0.056 3.944 16 C -0.161 4.161 17 C -0.187 4.187 18 C -0.023 4.023 19 N -0.374 5.374 20 C -0.146 4.146 21 C -0.173 4.173 22 C -0.256 4.256 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.221 0.779 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.690 -7.692 -7.141 13.626 hybrid contribution 0.804 1.161 -0.905 1.677 sum -7.887 -6.531 -8.046 13.023 Atomic orbital electron populations 1.69882 1.07492 1.28612 1.35833 1.25870 0.94657 1.01060 0.92341 0.86356 0.81115 0.81361 0.78397 1.18472 1.19874 1.20137 1.19585 0.98092 0.91326 1.40506 0.90600 1.17321 0.90099 0.91817 0.87196 1.20856 1.04862 0.92948 1.09167 1.20285 0.95161 0.96206 0.96908 1.19906 1.04509 0.94441 1.13391 1.17643 0.86206 0.94259 0.89996 1.44492 1.31618 1.06222 1.56473 1.20615 0.93203 0.88599 0.91962 1.21725 0.99448 0.97361 0.97588 1.22331 0.99185 0.98274 0.98870 1.21532 0.94481 0.91813 0.94429 1.58966 1.33062 1.06502 1.38919 1.21504 0.98833 0.98029 0.96262 1.22048 0.98574 0.96445 1.00244 1.20725 1.02700 0.95047 1.07161 0.91301 0.89473 0.89737 0.89566 0.77895 0.91070 0.91749 0.91623 0.92194 0.91949 0.90272 0.85016 0.84952 0.92244 0.91396 0.90891 0.92087 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 10.96 55.55 0.61 -20.21 16 2 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 3 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.81 5.57 -106.85 -0.60 3.21 16 10 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16 11 C -0.07 -1.56 10.01 -39.69 -0.40 -1.95 16 12 C -0.30 -6.82 8.84 -39.08 -0.35 -7.16 16 13 C 0.22 5.06 6.63 -83.86 -0.56 4.51 16 14 N -0.76 -14.25 5.25 -52.22 -0.27 -14.53 16 15 C 0.16 2.47 2.14 -67.93 -0.15 2.33 16 16 C -0.12 -1.49 5.39 -26.73 -0.14 -1.63 16 17 C -0.15 -1.47 5.49 -26.73 -0.15 -1.61 16 18 C 0.09 0.91 3.24 -67.71 -0.22 0.69 16 19 N -0.85 -7.60 9.25 -4.67 -0.04 -7.64 16 20 C -0.11 -1.28 5.47 -26.74 -0.15 -1.42 16 21 C -0.13 -1.93 5.42 -26.74 -0.14 -2.07 16 22 C -0.23 -6.11 8.53 -38.68 -0.33 -6.44 16 23 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 24 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 25 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 26 H 0.09 1.77 6.05 -52.49 -0.32 1.45 16 27 H 0.39 7.03 8.61 -40.82 -0.35 6.68 16 28 H 0.07 1.16 6.48 -51.93 -0.34 0.83 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.34 2.49 9.04 -39.29 -0.36 2.13 16 35 H 0.34 2.73 8.99 -39.29 -0.35 2.37 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -28.15 317.54 -10.15 -38.30 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -6.21 Total: 14.95 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -3.98 Total: -29.65 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.29 Total: -42.39 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.15 -10.15 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.191 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds