Wall clock time and date at job start Mon Mar 30 2020 06:38:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30835 * 1
3 3 Si 1.86794 * 119.99976 * 2 1
4 4 H 1.48503 * 109.47229 * 179.97438 * 3 2 1
5 5 H 1.48506 * 109.46951 * 299.99241 * 3 2 1
6 6 H 1.48499 * 109.47487 * 59.99265 * 3 2 1
7 7 C 1.39933 * 119.99999 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99898 * 197.89174 * 7 2 1
9 9 C 1.41412 * 119.99632 * 17.89413 * 7 2 1
10 10 C 1.40783 * 120.20567 * 204.41392 * 9 7 2
11 11 C 1.37639 * 119.89503 * 180.02562 * 10 9 7
12 12 C 1.38523 * 120.32636 * 359.74104 * 11 10 9
13 13 C 1.39294 * 120.42182 * 0.51408 * 12 11 10
14 14 N 1.39676 * 119.95199 * 179.76071 * 13 12 11
15 15 C 1.46502 * 120.00266 * 359.72968 * 14 13 12
16 16 C 1.52999 * 109.47018 * 204.99960 * 15 14 13
17 17 C 1.53005 * 109.46960 * 179.97438 * 16 15 14
18 18 C 1.52995 * 109.47265 * 59.99330 * 17 16 15
19 19 N 1.46903 * 109.47246 * 179.97438 * 18 17 16
20 20 C 1.52998 * 109.47475 * 300.00556 * 18 17 16
21 21 C 1.52992 * 109.47184 * 59.99567 * 20 18 17
22 22 C 1.38318 * 120.09280 * 359.48780 * 13 12 11
23 23 H 0.97001 * 119.99872 * 0.02562 * 1 2 3
24 24 H 1.08006 * 120.05415 * 359.97438 * 10 9 7
25 25 H 1.08000 * 119.83852 * 180.02562 * 11 10 9
26 26 H 1.07999 * 119.79189 * 180.27774 * 12 11 10
27 27 H 0.97008 * 120.00296 * 179.72880 * 14 13 12
28 28 H 1.08999 * 109.46783 * 324.99296 * 15 14 13
29 29 H 1.09003 * 109.47276 * 299.99208 * 16 15 14
30 30 H 1.09000 * 109.47322 * 60.00014 * 16 15 14
31 31 H 1.09001 * 109.46977 * 179.97438 * 17 16 15
32 32 H 1.09003 * 109.46486 * 299.99700 * 17 16 15
33 33 H 1.09003 * 109.47066 * 60.00726 * 18 17 16
34 34 H 1.00900 * 110.99907 * 300.00594 * 19 18 17
35 35 H 1.00907 * 110.99707 * 63.95444 * 19 18 17
36 36 H 1.09004 * 109.46642 * 299.99532 * 20 18 17
37 37 H 1.09005 * 109.47104 * 180.02562 * 20 18 17
38 38 H 1.09000 * 109.47350 * 180.02562 * 21 20 18
39 39 H 1.09004 * 109.47359 * 60.00405 * 21 20 18
40 40 H 1.08007 * 120.15840 * 180.22537 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7023 1.3464 0.0006
5 1 1.8837 2.3963 -1.2127
6 1 1.8835 2.3965 1.2124
7 6 2.0080 -1.2119 0.0005
8 1 3.0488 -1.2343 0.2879
9 6 1.3522 -2.4070 -0.3752
10 6 1.8261 -3.6500 0.0856
11 6 1.1832 -4.8094 -0.2846
12 6 0.0679 -4.7594 -1.1046
13 6 -0.4093 -3.5373 -1.5726
14 7 -1.5318 -3.4988 -2.4030
15 6 -2.2027 -4.7435 -2.7861
16 6 -2.9430 -4.5375 -4.1091
17 6 -3.6432 -5.8377 -4.5095
18 6 -4.6433 -6.2343 -3.4218
19 7 -5.3160 -7.4823 -3.8065
20 6 -3.9030 -6.4402 -2.0987
21 6 -3.2029 -5.1401 -1.6984
22 6 0.2233 -2.3615 -1.2115
23 1 -0.4850 0.8401 -0.0004
24 1 2.6933 -3.6939 0.7279
25 1 1.5473 -5.7624 0.0698
26 1 -0.4326 -5.6741 -1.3861
27 1 -1.8671 -2.6478 -2.7262
28 1 -1.4618 -5.5343 -2.9037
29 1 -3.6840 -3.7468 -3.9916
30 1 -2.2304 -4.2555 -4.8842
31 1 -4.1710 -5.6908 -5.4519
32 1 -2.9019 -6.6281 -4.6272
33 1 -5.3846 -5.4438 -3.3041
34 1 -5.8126 -7.3716 -4.6778
35 1 -4.6586 -8.2459 -3.8594
36 1 -3.1618 -7.2307 -2.2164
37 1 -4.6156 -6.7231 -1.3239
38 1 -2.6751 -5.2869 -0.7561
39 1 -3.9441 -4.3495 -1.5807
40 1 -0.1480 -1.4131 -1.5708
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000313410316.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:31
Heat of formation + Delta-G solvation = -2.104470 kcal
Electronic energy + Delta-G solvation = -19264.193510 eV
Core-core repulsion = 16462.884766 eV
Total energy + Delta-G solvation = -2801.308744 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.18127 -37.44872 -35.01987 -33.40605 -31.92917 -30.78159 -29.39345 -28.31251
-25.83293 -25.15176 -22.67048 -21.70129 -20.93656 -19.90504 -19.61701 -17.18424
-16.27908 -15.69064 -15.44614 -14.95967 -14.68948 -14.35457 -14.18171 -13.47637
-13.30793 -12.97659 -12.69196 -12.39531 -12.17221 -12.14358 -11.68202 -11.40256
-11.20813 -11.15324 -11.01524 -10.95872 -10.63266 -10.50608 -10.26799 -10.13140
-9.57031 -9.39629 -9.20907 -8.83514 -8.70531 -7.27452 -6.70195 -6.12184
-4.28165 2.87837 3.11587 3.17360 3.26338 3.36330 3.99935 4.17420
4.50488 4.65923 4.72743 4.77730 5.16334 5.17506 5.30758 5.49480
5.52492 5.56858 5.75358 5.85396 5.87395 6.01271 6.06054 6.13392
6.30734 6.31869 6.46071 6.53915 6.68005 6.92419 6.97431 7.15284
7.17402 7.25366 7.42061 7.48145 7.85646 7.99876 8.14978 8.21178
8.52910 8.75883 8.87939 9.04700 9.15862 10.28387
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.033515 B = 0.004391 C = 0.004081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.253723 B = 6375.732051 C = 6859.724830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.793 5.793
2 C 0.078 3.922
3 Si 0.903 3.097
4 H -0.261 1.261
5 H -0.273 1.273
6 H -0.276 1.276
7 C -0.465 4.465
8 H 0.076 0.924
9 C 0.139 3.861
10 C -0.258 4.258
11 C -0.067 4.067
12 C -0.300 4.300
13 C 0.218 3.782
14 N -0.756 5.756
15 C 0.163 3.837
16 C -0.122 4.122
17 C -0.147 4.147
18 C 0.089 3.911
19 N -0.847 5.847
20 C -0.108 4.108
21 C -0.133 4.133
22 C -0.232 4.232
23 H 0.276 0.724
24 H 0.087 0.913
25 H 0.084 0.916
26 H 0.086 0.914
27 H 0.388 0.612
28 H 0.071 0.929
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.059 0.941
32 H 0.062 0.938
33 H 0.079 0.921
34 H 0.338 0.662
35 H 0.338 0.662
36 H 0.059 0.941
37 H 0.067 0.933
38 H 0.072 0.928
39 H 0.060 0.940
40 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.041 -7.745 -7.835 13.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.418 5.418
2 C -0.139 4.139
3 Si 0.728 3.272
4 H -0.185 1.185
5 H -0.199 1.199
6 H -0.201 1.201
7 C -0.495 4.495
8 H 0.094 0.906
9 C 0.136 3.864
10 C -0.278 4.278
11 C -0.086 4.086
12 C -0.322 4.322
13 C 0.119 3.881
14 N -0.388 5.388
15 C 0.056 3.944
16 C -0.161 4.161
17 C -0.187 4.187
18 C -0.023 4.023
19 N -0.374 5.374
20 C -0.146 4.146
21 C -0.173 4.173
22 C -0.256 4.256
23 H 0.087 0.913
24 H 0.105 0.895
25 H 0.103 0.897
26 H 0.104 0.896
27 H 0.221 0.779
28 H 0.089 0.911
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.078 0.922
32 H 0.081 0.919
33 H 0.097 0.903
34 H 0.150 0.850
35 H 0.150 0.850
36 H 0.078 0.922
37 H 0.086 0.914
38 H 0.091 0.909
39 H 0.079 0.921
40 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -8.690 -7.692 -7.141 13.626
hybrid contribution 0.804 1.161 -0.905 1.677
sum -7.887 -6.531 -8.046 13.023
Atomic orbital electron populations
1.69882 1.07492 1.28612 1.35833 1.25870 0.94657 1.01060 0.92341
0.86356 0.81115 0.81361 0.78397 1.18472 1.19874 1.20137 1.19585
0.98092 0.91326 1.40506 0.90600 1.17321 0.90099 0.91817 0.87196
1.20856 1.04862 0.92948 1.09167 1.20285 0.95161 0.96206 0.96908
1.19906 1.04509 0.94441 1.13391 1.17643 0.86206 0.94259 0.89996
1.44492 1.31618 1.06222 1.56473 1.20615 0.93203 0.88599 0.91962
1.21725 0.99448 0.97361 0.97588 1.22331 0.99185 0.98274 0.98870
1.21532 0.94481 0.91813 0.94429 1.58966 1.33062 1.06502 1.38919
1.21504 0.98833 0.98029 0.96262 1.22048 0.98574 0.96445 1.00244
1.20725 1.02700 0.95047 1.07161 0.91301 0.89473 0.89737 0.89566
0.77895 0.91070 0.91749 0.91623 0.92194 0.91949 0.90272 0.85016
0.84952 0.92244 0.91396 0.90891 0.92087 0.86599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.82 10.96 55.55 0.61 -20.21 16
2 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16
3 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16
4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16
5 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16
6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16
7 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 16
8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16
9 C 0.14 3.81 5.57 -106.85 -0.60 3.21 16
10 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16
11 C -0.07 -1.56 10.01 -39.69 -0.40 -1.95 16
12 C -0.30 -6.82 8.84 -39.08 -0.35 -7.16 16
13 C 0.22 5.06 6.63 -83.86 -0.56 4.51 16
14 N -0.76 -14.25 5.25 -52.22 -0.27 -14.53 16
15 C 0.16 2.47 2.14 -67.93 -0.15 2.33 16
16 C -0.12 -1.49 5.39 -26.73 -0.14 -1.63 16
17 C -0.15 -1.47 5.49 -26.73 -0.15 -1.61 16
18 C 0.09 0.91 3.24 -67.71 -0.22 0.69 16
19 N -0.85 -7.60 9.25 -4.67 -0.04 -7.64 16
20 C -0.11 -1.28 5.47 -26.74 -0.15 -1.42 16
21 C -0.13 -1.93 5.42 -26.74 -0.14 -2.07 16
22 C -0.23 -6.11 8.53 -38.68 -0.33 -6.44 16
23 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16
24 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16
25 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16
26 H 0.09 1.77 6.05 -52.49 -0.32 1.45 16
27 H 0.39 7.03 8.61 -40.82 -0.35 6.68 16
28 H 0.07 1.16 6.48 -51.93 -0.34 0.83 16
29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
34 H 0.34 2.49 9.04 -39.29 -0.36 2.13 16
35 H 0.34 2.73 8.99 -39.29 -0.35 2.37 16
36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16
39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16
LS Contribution 317.54 15.07 4.79 4.79
Total: -1.00 -28.15 317.54 -10.15 -38.30
By element:
Atomic # 1 Polarization: 21.16 SS G_CDS: -6.21 Total: 14.95 kcal
Atomic # 6 Polarization: -25.66 SS G_CDS: -3.98 Total: -29.65 kcal
Atomic # 7 Polarization: -42.68 SS G_CDS: 0.29 Total: -42.39 kcal
Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -28.15 -10.15 -38.30 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313410316.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.191 kcal
(2) G-P(sol) polarization free energy of solvation -28.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds