Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86794 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46951 * 299.99241 * 3 2 1 6 6 H 1.48499 * 109.47487 * 59.99265 * 3 2 1 7 7 C 1.39933 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99898 * 197.89174 * 7 2 1 9 9 C 1.41412 * 119.99632 * 17.89413 * 7 2 1 10 10 C 1.40783 * 120.20567 * 204.41392 * 9 7 2 11 11 C 1.37639 * 119.89503 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32636 * 359.74104 * 11 10 9 13 13 C 1.39294 * 120.42182 * 0.51408 * 12 11 10 14 14 N 1.39676 * 119.95199 * 179.76071 * 13 12 11 15 15 C 1.46502 * 120.00266 * 359.72968 * 14 13 12 16 16 C 1.52999 * 109.47018 * 204.99960 * 15 14 13 17 17 C 1.53005 * 109.46960 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47265 * 59.99330 * 17 16 15 19 19 N 1.46903 * 109.47246 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47475 * 300.00556 * 18 17 16 21 21 C 1.52992 * 109.47184 * 59.99567 * 20 18 17 22 22 C 1.38318 * 120.09280 * 359.48780 * 13 12 11 23 23 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05415 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.83852 * 180.02562 * 11 10 9 26 26 H 1.07999 * 119.79189 * 180.27774 * 12 11 10 27 27 H 0.97008 * 120.00296 * 179.72880 * 14 13 12 28 28 H 1.08999 * 109.46783 * 324.99296 * 15 14 13 29 29 H 1.09003 * 109.47276 * 299.99208 * 16 15 14 30 30 H 1.09000 * 109.47322 * 60.00014 * 16 15 14 31 31 H 1.09001 * 109.46977 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.46486 * 299.99700 * 17 16 15 33 33 H 1.09003 * 109.47066 * 60.00726 * 18 17 16 34 34 H 1.00900 * 110.99907 * 300.00594 * 19 18 17 35 35 H 1.00907 * 110.99707 * 63.95444 * 19 18 17 36 36 H 1.09004 * 109.46642 * 299.99532 * 20 18 17 37 37 H 1.09005 * 109.47104 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47350 * 180.02562 * 21 20 18 39 39 H 1.09004 * 109.47359 * 60.00405 * 21 20 18 40 40 H 1.08007 * 120.15840 * 180.22537 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8837 2.3963 -1.2127 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2879 9 6 1.3522 -2.4070 -0.3752 10 6 1.8261 -3.6500 0.0856 11 6 1.1832 -4.8094 -0.2846 12 6 0.0679 -4.7594 -1.1046 13 6 -0.4093 -3.5373 -1.5726 14 7 -1.5318 -3.4988 -2.4030 15 6 -2.2027 -4.7435 -2.7861 16 6 -2.9430 -4.5375 -4.1091 17 6 -3.6432 -5.8377 -4.5095 18 6 -4.6433 -6.2343 -3.4218 19 7 -5.3160 -7.4823 -3.8065 20 6 -3.9030 -6.4402 -2.0987 21 6 -3.2029 -5.1401 -1.6984 22 6 0.2233 -2.3615 -1.2115 23 1 -0.4850 0.8401 -0.0004 24 1 2.6933 -3.6939 0.7279 25 1 1.5473 -5.7624 0.0698 26 1 -0.4326 -5.6741 -1.3861 27 1 -1.8671 -2.6478 -2.7262 28 1 -1.4618 -5.5343 -2.9037 29 1 -3.6840 -3.7468 -3.9916 30 1 -2.2304 -4.2555 -4.8842 31 1 -4.1710 -5.6908 -5.4519 32 1 -2.9019 -6.6281 -4.6272 33 1 -5.3846 -5.4438 -3.3041 34 1 -5.8126 -7.3716 -4.6778 35 1 -4.6586 -8.2459 -3.8594 36 1 -3.1618 -7.2307 -2.2164 37 1 -4.6156 -6.7231 -1.3239 38 1 -2.6751 -5.2869 -0.7561 39 1 -3.9441 -4.3495 -1.5807 40 1 -0.1480 -1.4131 -1.5708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = -19.346562 kcal Electronic energy + Delta-G solvation = -19264.941183 eV Core-core repulsion = 16462.884766 eV Total energy + Delta-G solvation = -2802.056417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41206 -39.08233 -36.46076 -35.18686 -33.21706 -31.80435 -31.31459 -29.76728 -27.23662 -27.02177 -23.72578 -23.14142 -22.49040 -21.47259 -20.85204 -19.07053 -17.70212 -16.97004 -16.67669 -16.45306 -16.29408 -15.82678 -15.22998 -14.84595 -14.68101 -14.29472 -14.24665 -13.95921 -13.68569 -13.36332 -13.15783 -13.01736 -12.74087 -12.58615 -12.34441 -12.15852 -12.11379 -11.92199 -11.67530 -11.50270 -11.25834 -11.16560 -11.03490 -10.43379 -9.54942 -9.24486 -8.61945 -7.89060 -6.31897 1.08080 1.34003 1.38332 1.53027 1.57604 2.23151 2.76654 2.83661 3.65326 3.70547 3.79094 3.89435 4.13559 4.24200 4.31595 4.41637 4.51512 4.51741 4.55497 4.78042 4.81616 4.87797 5.00296 5.07750 5.08474 5.15520 5.19836 5.23646 5.31751 5.40305 5.42314 5.50539 5.62912 5.97441 6.11765 6.22152 6.27365 6.28827 6.59183 6.65640 6.95314 7.06242 7.08477 7.26813 8.38512 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033515 B = 0.004391 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.253723 B = 6375.732051 C = 6859.724830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.109 3.891 10 C -0.286 4.286 11 C -0.064 4.064 12 C -0.301 4.301 13 C 0.223 3.777 14 N -0.751 5.751 15 C 0.160 3.840 16 C -0.116 4.116 17 C -0.138 4.138 18 C 0.096 3.904 19 N -0.849 5.849 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.261 4.261 23 H 0.285 0.715 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.390 0.610 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.350 0.650 35 H 0.345 0.655 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -8.550 -9.110 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.307 4.307 11 C -0.082 4.082 12 C -0.324 4.324 13 C 0.122 3.878 14 N -0.381 5.381 15 C 0.055 3.945 16 C -0.155 4.155 17 C -0.178 4.178 18 C -0.016 4.016 19 N -0.379 5.379 20 C -0.139 4.139 21 C -0.166 4.166 22 C -0.285 4.285 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.797 -8.531 -8.441 15.492 hybrid contribution 1.043 1.290 -0.527 1.741 sum -8.753 -7.241 -8.968 14.473 Atomic orbital electron populations 1.69935 1.08902 1.30021 1.35969 1.26709 0.95471 1.04273 0.91266 0.85210 0.79424 0.76431 0.78894 1.18369 1.18864 1.19079 1.19829 0.98219 0.92763 1.42653 0.91132 1.17712 0.90999 0.92802 0.87914 1.21012 1.05832 0.93393 1.10450 1.20648 0.94707 0.96849 0.96026 1.20221 1.04286 0.95135 1.12719 1.17748 0.86792 0.93622 0.89639 1.44642 1.30395 1.07950 1.55124 1.20842 0.93171 0.86601 0.93884 1.21668 0.99325 0.98984 0.95474 1.22287 0.99068 0.96867 0.99556 1.21379 0.94289 0.92421 0.93518 1.58905 1.33136 1.05971 1.39867 1.21422 0.98816 0.96372 0.97325 1.21930 0.98141 0.97909 0.98658 1.20660 1.03712 0.95467 1.08688 0.90491 0.89319 0.86518 0.87053 0.77617 0.91751 0.91281 0.91710 0.90170 0.91563 0.90651 0.83689 0.84180 0.91788 0.91495 0.93634 0.92460 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.36 10.96 21.82 0.24 -44.13 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.50 -28.66 9.05 23.46 0.21 -28.45 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.11 6.20 5.57 -21.31 -0.12 6.08 16 10 C -0.29 -15.00 9.79 22.75 0.22 -14.78 16 11 C -0.06 -2.94 10.01 22.20 0.22 -2.72 16 12 C -0.30 -13.49 8.84 22.59 0.20 -13.29 16 13 C 0.22 10.48 6.63 38.16 0.25 10.74 16 14 N -0.75 -28.14 5.25 -319.13 -1.67 -29.81 16 15 C 0.16 4.65 2.14 44.99 0.10 4.74 16 16 C -0.12 -2.55 5.39 30.60 0.16 -2.39 16 17 C -0.14 -2.31 5.49 30.59 0.17 -2.15 16 18 C 0.10 1.70 3.24 44.91 0.15 1.85 16 19 N -0.85 -12.60 9.25 -168.68 -1.56 -14.17 16 20 C -0.10 -2.19 5.47 30.59 0.17 -2.02 16 21 C -0.13 -3.53 5.42 30.59 0.17 -3.37 16 22 C -0.26 -14.20 8.53 22.86 0.20 -14.01 16 23 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 24 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 25 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 26 H 0.11 4.38 6.05 -2.91 -0.02 4.36 16 27 H 0.39 14.19 8.61 -92.70 -0.80 13.39 16 28 H 0.06 1.98 6.48 -2.39 -0.02 1.97 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.35 3.97 9.04 -89.69 -0.81 3.16 16 35 H 0.35 4.46 8.99 -89.69 -0.81 3.66 16 36 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -62.32 317.54 0.21 -62.11 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.36 Total: 41.73 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 2.53 Total: -57.36 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -3.00 Total: -88.10 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -62.32 0.21 -62.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.768 kcal (2) G-P(sol) polarization free energy of solvation -62.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds