Wall clock time and date at job start Mon Mar 30 2020 06:39:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30833 * 1
3 3 Si 1.86798 * 120.00033 * 2 1
4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47078 * 299.99382 * 3 2 1
6 6 H 1.48492 * 109.47475 * 59.99680 * 3 2 1
7 7 C 1.39934 * 119.99844 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99915 * 154.23074 * 7 2 1
9 9 C 1.41404 * 119.99716 * 334.22246 * 7 2 1
10 10 C 1.40789 * 120.20154 * 155.00124 * 9 7 2
11 11 C 1.37644 * 119.89114 * 179.97438 * 10 9 7
12 12 C 1.38531 * 120.32874 * 0.02562 * 11 10 9
13 13 C 1.39295 * 120.41816 * 0.02562 * 12 11 10
14 14 N 1.39680 * 119.94790 * 179.97438 * 13 12 11
15 15 C 1.46505 * 120.00174 * 0.02562 * 14 13 12
16 16 H 1.08999 * 110.66950 * 34.29293 * 15 14 13
17 17 C 1.54888 * 110.75069 * 271.05892 * 15 14 13
18 18 C 1.54471 * 104.09871 * 203.89209 * 17 15 14
19 19 C 1.53872 * 106.68415 * 23.34382 * 18 17 15
20 20 C 1.54272 * 106.59922 * 0.16137 * 19 18 17
21 21 H 1.08999 * 110.48974 * 95.06877 * 20 19 18
22 22 C 1.53008 * 110.48488 * 217.71279 * 20 19 18
23 23 N 1.46902 * 109.46958 * 289.77288 * 22 20 19
24 24 C 1.38316 * 120.09612 * 359.69743 * 13 12 11
25 25 H 0.96991 * 119.99771 * 174.23237 * 1 2 3
26 26 H 1.08000 * 120.05804 * 359.97438 * 10 9 7
27 27 H 1.08000 * 119.84299 * 179.97438 * 11 10 9
28 28 H 1.07990 * 119.79033 * 179.97438 * 12 11 10
29 29 H 0.97004 * 120.00147 * 180.02562 * 14 13 12
30 30 H 1.08996 * 110.49179 * 322.42060 * 17 15 14
31 31 H 1.08999 * 110.48505 * 85.06999 * 17 15 14
32 32 H 1.08997 * 109.85519 * 264.10644 * 18 17 15
33 33 H 1.08992 * 110.16465 * 142.75132 * 18 17 15
34 34 H 1.08996 * 110.03599 * 240.87667 * 19 18 17
35 35 H 1.09007 * 110.03315 * 119.43917 * 19 18 17
36 36 H 1.08998 * 109.47371 * 49.76932 * 22 20 19
37 37 H 1.08991 * 109.47049 * 169.77381 * 22 20 19
38 38 H 1.00903 * 111.00326 * 56.04614 * 23 22 20
39 39 H 1.00898 * 110.99896 * 180.02562 * 23 22 20
40 40 H 1.08005 * 120.16334 * 180.27479 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7023 1.3463 0.0006
5 1 1.8837 2.3963 -1.2126
6 1 1.8836 2.3965 1.2124
7 6 2.0080 -1.2119 0.0005
8 1 3.0074 -1.2586 -0.4061
9 6 1.4064 -2.3753 0.5336
10 6 1.8189 -3.6490 0.0981
11 6 1.2293 -4.7772 0.6217
12 6 0.2308 -4.6662 1.5755
13 6 -0.1883 -3.4126 2.0151
14 7 -1.1963 -3.3121 2.9769
15 6 -1.8115 -4.5245 3.5228
16 1 -1.0794 -5.3289 3.5939
17 6 -3.0237 -4.9599 2.6626
18 6 -3.8933 -5.7914 3.6314
19 6 -3.5274 -5.3361 5.0550
20 6 -2.4514 -4.2409 4.9045
21 1 -2.9094 -3.2518 4.9171
22 6 -1.4051 -4.3621 6.0142
23 7 -2.0051 -3.9733 7.2975
24 6 0.3961 -2.2675 1.5050
25 1 -0.4849 -0.8357 -0.0844
26 1 2.5967 -3.7407 -0.6456
27 1 1.5461 -5.7538 0.2868
28 1 -0.2261 -5.5571 1.9801
29 1 -1.4891 -2.4395 3.2833
30 1 -3.5747 -4.0878 2.3107
31 1 -2.6950 -5.5698 1.8211
32 1 -3.6721 -6.8518 3.5101
33 1 -4.9503 -5.6066 3.4404
34 1 -3.1287 -6.1755 5.6246
35 1 -4.4068 -4.9294 5.5545
36 1 -1.0564 -5.3931 6.0738
37 1 -0.5633 -3.7061 5.7931
38 1 -2.8268 -4.5247 7.4944
39 1 -1.3334 -4.0445 8.0471
40 1 0.0751 -1.2951 1.8483
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000313411232.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:53
Heat of formation + Delta-G solvation = -5.703007 kcal
Electronic energy + Delta-G solvation = -19359.889095 eV
Core-core repulsion = 16558.424307 eV
Total energy + Delta-G solvation = -2801.464788 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.12472 -37.48623 -34.63945 -33.91471 -32.96081 -29.16903 -29.05838 -28.49301
-26.15942 -24.96465 -23.39528 -21.26090 -20.67595 -19.78357 -19.59300 -17.75702
-16.37629 -16.00053 -15.43038 -14.71264 -14.56415 -14.50388 -14.01684 -13.85107
-13.42769 -13.05443 -12.80615 -12.54076 -12.30096 -12.00855 -11.60762 -11.53005
-11.16728 -11.07812 -10.79623 -10.67806 -10.57099 -10.42254 -10.37255 -10.21720
-9.76732 -9.40722 -9.03855 -8.81750 -8.73490 -7.46393 -7.14814 -6.27196
-4.34834 2.92160 3.11796 3.21331 3.38786 3.41049 4.09693 4.16694
4.35687 4.63283 4.73361 4.78918 4.88267 5.28346 5.34601 5.52512
5.53692 5.61511 5.67139 5.71496 5.79742 5.91367 5.98853 6.05677
6.20645 6.30500 6.38474 6.40550 6.55800 6.81870 6.99808 7.03155
7.11336 7.29515 7.31624 7.68899 7.72404 7.95817 7.98345 8.10873
8.36031 8.63021 8.64289 8.98397 9.05999 10.17487
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.022801 B = 0.005041 C = 0.004631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1227.702626 B = 5552.642861 C = 6044.988447
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.801 5.801
2 C 0.041 3.959
3 Si 1.067 2.933
4 H -0.277 1.277
5 H -0.280 1.280
6 H -0.276 1.276
7 C -0.527 4.527
8 H 0.073 0.927
9 C 0.128 3.872
10 C -0.263 4.263
11 C -0.055 4.055
12 C -0.313 4.313
13 C 0.238 3.762
14 N -0.750 5.750
15 C 0.164 3.836
16 H 0.080 0.920
17 C -0.140 4.140
18 C -0.122 4.122
19 C -0.117 4.117
20 C -0.098 4.098
21 H 0.085 0.915
22 C 0.069 3.931
23 N -0.851 5.851
24 C -0.288 4.288
25 H 0.300 0.700
26 H 0.088 0.912
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.390 0.610
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.059 0.941
35 H 0.064 0.936
36 H 0.026 0.974
37 H 0.077 0.923
38 H 0.336 0.664
39 H 0.339 0.661
40 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.097 -7.608 9.687 13.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.425 5.425
2 C -0.181 4.181
3 Si 0.892 3.108
4 H -0.202 1.202
5 H -0.205 1.205
6 H -0.201 1.201
7 C -0.555 4.555
8 H 0.091 0.909
9 C 0.125 3.875
10 C -0.283 4.283
11 C -0.074 4.074
12 C -0.336 4.336
13 C 0.139 3.861
14 N -0.381 5.381
15 C 0.056 3.944
16 H 0.098 0.902
17 C -0.179 4.179
18 C -0.160 4.160
19 C -0.156 4.156
20 C -0.117 4.117
21 H 0.103 0.897
22 C -0.061 4.061
23 N -0.380 5.380
24 C -0.312 4.312
25 H 0.114 0.886
26 H 0.106 0.894
27 H 0.104 0.896
28 H 0.105 0.895
29 H 0.224 0.776
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.078 0.922
35 H 0.083 0.917
36 H 0.044 0.956
37 H 0.095 0.905
38 H 0.149 0.851
39 H 0.151 0.849
40 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -6.471 -5.434 9.426 12.659
hybrid contribution 0.226 -2.452 0.297 2.480
sum -6.245 -7.886 9.723 13.990
Atomic orbital electron populations
1.70370 1.08245 1.34425 1.29445 1.26922 0.95699 1.04091 0.91346
0.83631 0.75590 0.73722 0.77899 1.20228 1.20549 1.20107 1.20558
1.03292 0.94313 1.37362 0.90871 1.17381 0.89399 0.92364 0.88390
1.20806 1.07684 0.92679 1.07138 1.20328 0.95292 0.96340 0.95430
1.19845 1.09042 0.93973 1.10697 1.17537 0.86964 0.94023 0.87607
1.44481 1.41551 1.06121 1.45970 1.21619 0.93361 0.88931 0.90455
0.90183 1.22884 0.96858 0.99926 0.98241 1.22100 0.99668 0.99670
0.94607 1.22142 0.98432 0.97755 0.97229 1.22250 0.95494 0.99970
0.94007 0.89683 1.21828 0.97054 0.98344 0.88879 1.58719 1.11258
1.63388 1.04621 1.20545 1.08503 0.95332 1.06833 0.88590 0.89416
0.89611 0.89459 0.77621 0.91383 0.91388 0.92083 0.92013 0.92232
0.91725 0.95616 0.90495 0.85146 0.84876 0.87871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -21.83 12.31 55.55 0.68 -21.15 16
2 C 0.04 1.07 4.93 -17.34 -0.09 0.99 16
3 Si 1.07 22.34 30.00 -169.99 -5.10 17.24 16
4 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16
5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16
6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16
7 C -0.53 -14.50 8.98 -37.74 -0.34 -14.84 16
8 H 0.07 1.98 7.96 -52.48 -0.42 1.56 16
9 C 0.13 3.51 5.30 -106.85 -0.57 2.94 16
10 C -0.26 -6.72 9.79 -38.83 -0.38 -7.10 16
11 C -0.05 -1.28 10.02 -39.69 -0.40 -1.67 16
12 C -0.31 -7.04 9.23 -39.08 -0.36 -7.40 16
13 C 0.24 5.46 6.64 -83.86 -0.56 4.90 16
14 N -0.75 -13.99 5.37 -50.30 -0.27 -14.26 16
15 C 0.16 2.48 2.31 -65.94 -0.15 2.33 16
16 H 0.08 1.29 6.42 -51.93 -0.33 0.96 16
17 C -0.14 -1.98 6.53 -24.96 -0.16 -2.14 16
18 C -0.12 -1.35 6.81 -25.51 -0.17 -1.53 16
19 C -0.12 -1.22 5.70 -25.61 -0.15 -1.36 16
20 C -0.10 -1.22 2.71 -88.95 -0.24 -1.46 16
21 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16
22 C 0.07 0.84 6.17 -3.82 -0.02 0.82 16
23 N -0.85 -8.78 9.62 -10.37 -0.10 -8.88 16
24 C -0.29 -7.49 7.79 -38.68 -0.30 -7.79 16
25 H 0.30 8.45 6.70 -40.82 -0.27 8.18 16
26 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16
27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16
28 H 0.09 1.77 6.22 -52.49 -0.33 1.45 16
29 H 0.39 7.14 8.55 -40.82 -0.35 6.79 16
30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16
35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16
36 H 0.03 0.30 7.95 -51.93 -0.41 -0.12 16
37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16
38 H 0.34 2.94 8.36 -39.29 -0.33 2.61 16
39 H 0.34 2.98 9.08 -39.29 -0.36 2.62 16
40 H 0.10 2.79 6.48 -52.48 -0.34 2.45 16
LS Contribution 319.97 15.07 4.82 4.82
Total: -1.00 -28.31 319.97 -9.99 -38.30
By element:
Atomic # 1 Polarization: 23.38 SS G_CDS: -6.13 Total: 17.25 kcal
Atomic # 6 Polarization: -29.43 SS G_CDS: -3.89 Total: -33.32 kcal
Atomic # 7 Polarization: -44.60 SS G_CDS: 0.31 Total: -44.29 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.10 Total: 17.24 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -28.31 -9.99 -38.30 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313411232.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.593 kcal
(2) G-P(sol) polarization free energy of solvation -28.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds