Wall clock time and date at job start Mon Mar 30 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48502 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47125 * 299.99481 * 3 2 1 6 6 H 1.48504 * 109.47169 * 59.99919 * 3 2 1 7 7 C 1.39929 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 197.89129 * 7 2 1 9 9 C 1.41406 * 119.99840 * 17.88996 * 7 2 1 10 10 C 1.40785 * 120.20865 * 204.46256 * 9 7 2 11 11 C 1.37648 * 119.89470 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32376 * 359.71912 * 11 10 9 13 13 C 1.39295 * 120.42004 * 0.55666 * 12 11 10 14 14 N 1.39684 * 119.94419 * 179.72066 * 13 12 11 15 15 C 1.46499 * 120.00768 * 359.72733 * 14 13 12 16 16 H 1.09004 * 110.01324 * 325.69972 * 15 14 13 17 17 C 1.54265 * 110.03354 * 87.08743 * 15 14 13 18 18 C 1.54884 * 104.19352 * 142.94715 * 17 15 14 19 19 C 1.54891 * 102.75273 * 322.05792 * 18 17 15 20 20 C 1.53863 * 110.03517 * 204.31049 * 15 14 13 21 21 H 1.09005 * 110.03825 * 121.37974 * 20 15 14 22 22 C 1.52999 * 110.03443 * 359.94831 * 20 15 14 23 23 N 1.46900 * 109.47508 * 174.99930 * 22 20 15 24 24 C 1.38310 * 120.09713 * 359.44571 * 13 12 11 25 25 H 0.96996 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05794 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.84153 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78864 * 180.27637 * 12 11 10 29 29 H 0.97003 * 119.99690 * 179.72505 * 14 13 12 30 30 H 1.08998 * 110.48820 * 261.62722 * 17 15 14 31 31 H 1.09007 * 110.48294 * 24.13781 * 17 15 14 32 32 H 1.09001 * 110.75373 * 80.37735 * 18 17 15 33 33 H 1.09009 * 110.75606 * 203.74392 * 18 17 15 34 34 H 1.08994 * 110.48613 * 156.62125 * 19 18 17 35 35 H 1.09001 * 110.48420 * 279.13753 * 19 18 17 36 36 H 1.09000 * 109.47011 * 295.00096 * 22 20 15 37 37 H 1.09002 * 109.47343 * 54.99660 * 22 20 15 38 38 H 1.00910 * 110.99451 * 56.04797 * 23 22 20 39 39 H 1.00893 * 111.00239 * 179.97438 * 23 22 20 40 40 H 1.08004 * 120.15942 * 180.29349 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3524 -2.4070 -0.3751 10 6 1.8258 -3.6499 0.0865 11 6 1.1823 -4.8093 -0.2827 12 6 0.0666 -4.7593 -1.1024 13 6 -0.4099 -3.5373 -1.5715 14 7 -1.5322 -3.4990 -2.4021 15 6 -2.2038 -4.7436 -2.7843 16 1 -1.4722 -5.5446 -2.8914 17 6 -3.2537 -5.1257 -1.7206 18 6 -4.4258 -5.7199 -2.5402 19 6 -4.4553 -4.8172 -3.7985 20 6 -2.9668 -4.5467 -4.1058 21 1 -2.6057 -5.2520 -4.8543 22 6 -2.7864 -3.1122 -4.6064 23 7 -3.4182 -2.9706 -5.9250 24 6 0.2233 -2.3616 -1.2113 25 1 -0.4850 0.8400 -0.0004 26 1 2.6925 -3.6937 0.7294 27 1 1.5465 -5.7622 0.0716 28 1 -0.4343 -5.6740 -1.3831 29 1 -1.8670 -2.6481 -2.7260 30 1 -2.8496 -5.8720 -1.0365 31 1 -3.5789 -4.2423 -1.1711 32 1 -4.2211 -6.7554 -2.8123 33 1 -5.3621 -5.6426 -1.9873 34 1 -4.9282 -5.3384 -4.6309 35 1 -4.9784 -3.8847 -3.5868 36 1 -3.2524 -2.4210 -3.9041 37 1 -1.7231 -2.8864 -4.6869 38 1 -4.3910 -3.2366 -5.8903 39 1 -3.3131 -2.0310 -6.2773 40 1 -0.1480 -1.4132 -1.5706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313411233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:56 Heat of formation + Delta-G solvation = 10.811615 kcal Electronic energy + Delta-G solvation = -19508.716436 eV Core-core repulsion = 16707.967775 eV Total energy + Delta-G solvation = -2800.748661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.27432 -37.25302 -34.28587 -33.85560 -32.90552 -29.42943 -28.99740 -28.35435 -25.88032 -25.15436 -23.69065 -20.98938 -20.65516 -20.23628 -18.69643 -17.18977 -16.51085 -15.95499 -15.17900 -15.11100 -14.65333 -14.52699 -14.02425 -13.83478 -13.09532 -12.84411 -12.62664 -12.58203 -12.16961 -12.06567 -11.51545 -11.14066 -11.03712 -10.96118 -10.91104 -10.65916 -10.56292 -10.54496 -10.48109 -10.20773 -9.57747 -9.39232 -9.20804 -8.76197 -8.67770 -7.26964 -6.70389 -6.11155 -4.28042 2.87686 3.11159 3.17105 3.26809 3.36579 3.99688 4.25162 4.51357 4.68511 4.73630 4.82933 4.99876 5.38710 5.41225 5.59490 5.66030 5.67159 5.81021 5.82139 5.87823 5.99462 6.06697 6.10581 6.33000 6.37881 6.40033 6.52919 6.67777 6.93319 7.06533 7.15707 7.18151 7.35837 7.42180 7.48554 7.86292 8.00533 8.15504 8.21317 8.53265 8.75054 8.88277 9.04832 9.16111 10.28147 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.005548 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.380306 B = 5045.880376 C = 5868.147831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.298 4.298 13 C 0.216 3.784 14 N -0.755 5.755 15 C 0.162 3.838 16 H 0.077 0.923 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.083 0.917 22 C 0.064 3.936 23 N -0.851 5.851 24 C -0.232 4.232 25 H 0.276 0.724 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.389 0.611 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.082 0.918 38 H 0.336 0.664 39 H 0.340 0.660 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -4.801 -7.164 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.135 3.865 10 C -0.278 4.278 11 C -0.086 4.086 12 C -0.321 4.321 13 C 0.117 3.883 14 N -0.390 5.390 15 C 0.055 3.945 16 H 0.095 0.905 17 C -0.178 4.178 18 C -0.162 4.162 19 C -0.157 4.157 20 C -0.116 4.116 21 H 0.101 0.899 22 C -0.066 4.066 23 N -0.380 5.380 24 C -0.256 4.256 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.225 0.775 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.553 -5.363 -7.394 12.513 hybrid contribution -0.453 1.808 0.517 1.934 sum -9.006 -3.555 -6.877 11.876 Atomic orbital electron populations 1.69880 1.07493 1.28546 1.36019 1.25863 0.94649 1.01043 0.92338 0.86362 0.81156 0.81379 0.78372 1.18449 1.19894 1.20159 1.19579 0.98090 0.91318 1.40491 0.90604 1.17321 0.90108 0.91817 0.87213 1.20855 1.04858 0.92955 1.09154 1.20291 0.95159 0.96200 0.96915 1.19912 1.04439 0.94469 1.13242 1.17667 0.86324 0.94250 0.90011 1.44788 1.31630 1.06278 1.56283 1.21279 0.93156 0.88673 0.91416 0.90487 1.22930 0.95598 1.01021 0.98231 1.22450 0.98587 0.98900 0.96240 1.22439 0.95876 0.99578 0.97792 1.22048 0.95372 0.97080 0.97077 0.89886 1.21860 1.00296 0.95829 0.88641 1.58778 1.20790 1.31428 1.26965 1.20703 1.02694 0.94986 1.07210 0.91365 0.89484 0.89737 0.89564 0.77454 0.91625 0.91166 0.91624 0.91915 0.91778 0.92100 0.95333 0.89944 0.85247 0.84844 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.80 10.96 55.55 0.61 -20.19 16 2 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 3 Si 0.90 19.03 29.59 -169.99 -5.03 13.99 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.67 9.05 -37.74 -0.34 -13.01 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.80 5.57 -106.85 -0.60 3.20 16 10 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.30 -6.79 9.22 -39.08 -0.36 -7.15 16 13 C 0.22 5.02 6.64 -83.86 -0.56 4.46 16 14 N -0.76 -14.17 4.58 -51.14 -0.23 -14.41 16 15 C 0.16 2.51 2.88 -66.82 -0.19 2.32 16 16 H 0.08 1.27 6.48 -51.93 -0.34 0.94 16 17 C -0.14 -2.00 6.53 -25.08 -0.16 -2.17 16 18 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 19 C -0.12 -1.29 5.57 -25.01 -0.14 -1.43 16 20 C -0.10 -1.23 3.16 -89.45 -0.28 -1.51 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 C 0.06 0.83 4.77 -3.82 -0.02 0.81 16 23 N -0.85 -9.24 9.62 -10.37 -0.10 -9.34 16 24 C -0.23 -6.08 8.53 -38.68 -0.33 -6.41 16 25 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 26 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 1.77 6.22 -52.49 -0.33 1.45 16 29 H 0.39 7.06 5.87 -40.82 -0.24 6.82 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.66 7.77 -51.93 -0.40 0.25 16 36 H 0.03 0.38 7.12 -51.93 -0.37 0.01 16 37 H 0.08 1.23 7.41 -51.93 -0.38 0.85 16 38 H 0.34 3.14 8.23 -39.29 -0.32 2.81 16 39 H 0.34 3.26 9.08 -39.30 -0.36 2.90 16 40 H 0.12 3.11 6.16 -52.48 -0.32 2.79 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -28.04 315.27 -10.01 -38.06 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -5.99 Total: 16.61 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -4.02 Total: -29.47 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.27 Total: -43.94 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.04 -10.01 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.870 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds