Wall clock time and date at job start Mon Mar 30 2020 06:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48502 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47125 * 299.99481 * 3 2 1 6 6 H 1.48504 * 109.47169 * 59.99919 * 3 2 1 7 7 C 1.39929 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 197.89129 * 7 2 1 9 9 C 1.41406 * 119.99840 * 17.88996 * 7 2 1 10 10 C 1.40785 * 120.20865 * 204.46256 * 9 7 2 11 11 C 1.37648 * 119.89470 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32376 * 359.71912 * 11 10 9 13 13 C 1.39295 * 120.42004 * 0.55666 * 12 11 10 14 14 N 1.39684 * 119.94419 * 179.72066 * 13 12 11 15 15 C 1.46499 * 120.00768 * 359.72733 * 14 13 12 16 16 H 1.09004 * 110.01324 * 325.69972 * 15 14 13 17 17 C 1.54265 * 110.03354 * 87.08743 * 15 14 13 18 18 C 1.54884 * 104.19352 * 142.94715 * 17 15 14 19 19 C 1.54891 * 102.75273 * 322.05792 * 18 17 15 20 20 C 1.53863 * 110.03517 * 204.31049 * 15 14 13 21 21 H 1.09005 * 110.03825 * 121.37974 * 20 15 14 22 22 C 1.52999 * 110.03443 * 359.94831 * 20 15 14 23 23 N 1.46900 * 109.47508 * 174.99930 * 22 20 15 24 24 C 1.38310 * 120.09713 * 359.44571 * 13 12 11 25 25 H 0.96996 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05794 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.84153 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78864 * 180.27637 * 12 11 10 29 29 H 0.97003 * 119.99690 * 179.72505 * 14 13 12 30 30 H 1.08998 * 110.48820 * 261.62722 * 17 15 14 31 31 H 1.09007 * 110.48294 * 24.13781 * 17 15 14 32 32 H 1.09001 * 110.75373 * 80.37735 * 18 17 15 33 33 H 1.09009 * 110.75606 * 203.74392 * 18 17 15 34 34 H 1.08994 * 110.48613 * 156.62125 * 19 18 17 35 35 H 1.09001 * 110.48420 * 279.13753 * 19 18 17 36 36 H 1.09000 * 109.47011 * 295.00096 * 22 20 15 37 37 H 1.09002 * 109.47343 * 54.99660 * 22 20 15 38 38 H 1.00910 * 110.99451 * 56.04797 * 23 22 20 39 39 H 1.00893 * 111.00239 * 179.97438 * 23 22 20 40 40 H 1.08004 * 120.15942 * 180.29349 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3524 -2.4070 -0.3751 10 6 1.8258 -3.6499 0.0865 11 6 1.1823 -4.8093 -0.2827 12 6 0.0666 -4.7593 -1.1024 13 6 -0.4099 -3.5373 -1.5715 14 7 -1.5322 -3.4990 -2.4021 15 6 -2.2038 -4.7436 -2.7843 16 1 -1.4722 -5.5446 -2.8914 17 6 -3.2537 -5.1257 -1.7206 18 6 -4.4258 -5.7199 -2.5402 19 6 -4.4553 -4.8172 -3.7985 20 6 -2.9668 -4.5467 -4.1058 21 1 -2.6057 -5.2520 -4.8543 22 6 -2.7864 -3.1122 -4.6064 23 7 -3.4182 -2.9706 -5.9250 24 6 0.2233 -2.3616 -1.2113 25 1 -0.4850 0.8400 -0.0004 26 1 2.6925 -3.6937 0.7294 27 1 1.5465 -5.7622 0.0716 28 1 -0.4343 -5.6740 -1.3831 29 1 -1.8670 -2.6481 -2.7260 30 1 -2.8496 -5.8720 -1.0365 31 1 -3.5789 -4.2423 -1.1711 32 1 -4.2211 -6.7554 -2.8123 33 1 -5.3621 -5.6426 -1.9873 34 1 -4.9282 -5.3384 -4.6309 35 1 -4.9784 -3.8847 -3.5868 36 1 -3.2524 -2.4210 -3.9041 37 1 -1.7231 -2.8864 -4.6869 38 1 -4.3910 -3.2366 -5.8903 39 1 -3.3131 -2.0310 -6.2773 40 1 -0.1480 -1.4132 -1.5706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313411233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:56 Heat of formation + Delta-G solvation = -5.982671 kcal Electronic energy + Delta-G solvation = -19509.444691 eV Core-core repulsion = 16707.967775 eV Total energy + Delta-G solvation = -2801.476916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56722 -38.96872 -35.89949 -35.03574 -34.58104 -31.35381 -30.40621 -29.53105 -27.35818 -27.06078 -24.79114 -22.83377 -22.12300 -21.53893 -20.07042 -18.94739 -18.02448 -17.13849 -16.80272 -16.51512 -16.06151 -16.00022 -15.29854 -15.14478 -14.64534 -14.44443 -14.08782 -13.83082 -13.74123 -13.59784 -13.20077 -12.76620 -12.69962 -12.50753 -12.21147 -12.05861 -11.89020 -11.61238 -11.59077 -11.50235 -11.47368 -11.24136 -11.05886 -10.44051 -9.65790 -9.24324 -8.62280 -7.87650 -6.31945 1.07910 1.34320 1.37600 1.52267 1.57258 2.22574 2.78287 2.84520 3.47330 3.66744 3.75212 3.88552 4.05133 4.32820 4.38479 4.45967 4.54191 4.54779 4.64068 4.77052 4.79607 4.85680 4.97285 5.00963 5.07024 5.18427 5.20015 5.23020 5.32700 5.36328 5.46893 5.49448 5.62547 5.97554 6.12185 6.17120 6.22102 6.28691 6.57607 6.60062 6.95187 7.06294 7.08119 7.26108 8.38075 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.005548 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.380306 B = 5045.880376 C = 5868.147831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.108 3.892 10 C -0.287 4.287 11 C -0.063 4.063 12 C -0.300 4.300 13 C 0.222 3.778 14 N -0.747 5.747 15 C 0.155 3.845 16 H 0.070 0.930 17 C -0.138 4.138 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.089 4.089 21 H 0.086 0.914 22 C 0.070 3.930 23 N -0.848 5.848 24 C -0.260 4.260 25 H 0.284 0.716 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.391 0.609 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.023 0.977 37 H 0.056 0.944 38 H 0.348 0.652 39 H 0.347 0.653 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 -5.494 -8.247 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.105 3.895 10 C -0.307 4.307 11 C -0.082 4.082 12 C -0.323 4.323 13 C 0.121 3.879 14 N -0.380 5.380 15 C 0.049 3.951 16 H 0.088 0.912 17 C -0.177 4.177 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.108 4.108 21 H 0.105 0.895 22 C -0.061 4.061 23 N -0.379 5.379 24 C -0.284 4.284 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.227 0.773 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.056 -6.081 -8.500 14.504 hybrid contribution -0.074 1.917 0.811 2.083 sum -10.131 -4.164 -7.689 13.382 Atomic orbital electron populations 1.69933 1.08888 1.29956 1.36084 1.26700 0.95471 1.04247 0.91277 0.85220 0.79457 0.76466 0.78879 1.18368 1.18902 1.19055 1.19818 0.98206 0.92752 1.42640 0.91150 1.17715 0.91011 0.92813 0.87932 1.21011 1.05839 0.93407 1.10462 1.20654 0.94692 0.96838 0.96022 1.20236 1.04274 0.95177 1.12621 1.17781 0.86901 0.93632 0.89632 1.44895 1.30369 1.07890 1.54890 1.21544 0.93337 0.86778 0.93459 0.91208 1.22861 0.96637 1.00204 0.98023 1.22427 0.97556 0.99478 0.95760 1.22412 0.94174 0.99905 0.98387 1.21981 0.96555 0.96934 0.95341 0.89531 1.21671 0.98922 0.95888 0.89628 1.58719 1.21623 1.32186 1.25417 1.20626 1.03697 0.95380 1.08737 0.90546 0.89336 0.86507 0.86989 0.77255 0.92255 0.93171 0.90159 0.90569 0.89420 0.91924 0.95901 0.92538 0.83870 0.83970 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.37 10.96 21.82 0.24 -44.13 16 2 C 0.04 1.97 5.14 85.25 0.44 2.41 16 3 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.50 -28.69 9.05 23.46 0.21 -28.48 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.11 6.19 5.57 -21.31 -0.12 6.07 16 10 C -0.29 -15.07 9.79 22.75 0.22 -14.85 16 11 C -0.06 -2.94 10.02 22.20 0.22 -2.72 16 12 C -0.30 -13.52 9.22 22.59 0.21 -13.31 16 13 C 0.22 10.46 6.64 38.16 0.25 10.72 16 14 N -0.75 -28.20 4.58 -315.72 -1.45 -29.65 16 15 C 0.16 4.62 2.88 45.71 0.13 4.75 16 16 H 0.07 2.20 6.48 -2.38 -0.02 2.18 16 17 C -0.14 -3.79 6.53 31.67 0.21 -3.58 16 18 C -0.11 -2.22 6.91 31.88 0.22 -2.00 16 19 C -0.11 -2.04 5.57 31.71 0.18 -1.86 16 20 C -0.09 -2.08 3.16 -10.03 -0.03 -2.11 16 21 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 22 C 0.07 1.73 4.77 86.30 0.41 2.14 16 23 N -0.85 -16.76 9.62 -186.72 -1.80 -18.56 16 24 C -0.26 -14.19 8.53 22.86 0.20 -14.00 16 25 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 26 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.11 4.41 6.22 -2.91 -0.02 4.39 16 29 H 0.39 14.48 5.87 -92.71 -0.54 13.93 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.58 8.05 -2.38 -0.02 1.56 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.16 7.77 -2.39 -0.02 1.14 16 36 H 0.02 0.59 7.12 -2.39 -0.02 0.57 16 37 H 0.06 1.69 7.41 -2.39 -0.02 1.68 16 38 H 0.35 5.52 8.23 -89.69 -0.74 4.78 16 39 H 0.35 6.10 9.08 -89.70 -0.81 5.29 16 40 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 Total: -1.00 -62.44 315.27 0.74 -61.70 By element: Atomic # 1 Polarization: 46.78 SS G_CDS: -1.04 Total: 45.75 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 2.75 Total: -56.81 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.00 Total: -92.34 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -62.44 0.74 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.715 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds