Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48496 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46975 * 299.99695 * 3 2 1 6 6 H 1.48503 * 109.47276 * 59.99361 * 3 2 1 7 7 C 1.39932 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00143 * 197.74318 * 7 2 1 9 9 C 1.41411 * 119.99647 * 17.46450 * 7 2 1 10 10 C 1.40786 * 120.20880 * 24.76370 * 9 7 2 11 11 C 1.37638 * 119.89525 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32656 * 359.97438 * 11 10 9 13 13 C 1.39290 * 120.41865 * 0.03067 * 12 11 10 14 14 N 1.39689 * 119.94416 * 179.97438 * 13 12 11 15 15 C 1.46490 * 120.00398 * 359.97438 * 14 13 12 16 16 H 1.09003 * 110.01657 * 325.06384 * 15 14 13 17 17 C 1.53877 * 110.03186 * 86.45727 * 15 14 13 18 18 C 1.54265 * 106.59772 * 119.28555 * 17 15 14 19 19 C 1.54892 * 104.19726 * 23.61152 * 18 17 15 20 20 C 1.54269 * 110.03367 * 203.62604 * 15 14 13 21 21 H 1.09001 * 110.48391 * 335.77774 * 20 15 14 22 22 C 1.52994 * 110.48852 * 98.42649 * 20 15 14 23 23 N 1.46905 * 109.47078 * 185.00072 * 22 20 15 24 24 C 1.38321 * 120.10105 * 359.66799 * 13 12 11 25 25 H 0.96997 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05112 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83973 * 180.02562 * 11 10 9 28 28 H 1.07993 * 119.78698 * 180.02562 * 12 11 10 29 29 H 0.97008 * 119.99303 * 180.02562 * 14 13 12 30 30 H 1.08998 * 110.02920 * 238.56692 * 17 15 14 31 31 H 1.08998 * 110.02990 * 359.95160 * 17 15 14 32 32 H 1.09000 * 110.48802 * 142.28599 * 18 17 15 33 33 H 1.08994 * 110.48863 * 264.79791 * 18 17 15 34 34 H 1.08999 * 110.75967 * 80.37171 * 19 18 17 35 35 H 1.08998 * 110.75618 * 203.55905 * 19 18 17 36 36 H 1.09001 * 109.47344 * 305.00071 * 22 20 15 37 37 H 1.09006 * 109.47024 * 65.00209 * 22 20 15 38 38 H 1.00900 * 110.99871 * 179.97438 * 23 22 20 39 39 H 1.00900 * 110.99916 * 303.95175 * 23 22 20 40 40 H 1.08001 * 120.16439 * 180.32051 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0494 -1.2339 0.2856 9 6 1.3498 -2.4084 -0.3665 10 6 0.2178 -2.3664 -1.2025 11 6 -0.4182 -3.5350 -1.5553 12 6 0.0503 -4.7536 -1.0921 13 6 1.1690 -4.8106 -0.2642 14 7 1.6325 -6.0448 0.1976 15 6 0.9420 -7.2777 -0.1884 16 1 -0.1303 -7.0969 -0.2637 17 6 1.4864 -7.7876 -1.5343 18 6 2.0766 -9.1879 -1.2689 19 6 1.3369 -9.6776 0.0008 20 6 1.2204 -8.3860 0.8479 21 1 2.1542 -8.1898 1.3747 22 6 0.0590 -8.4978 1.8376 23 7 0.3980 -9.4733 2.8823 24 6 1.8253 -3.6476 0.0962 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1509 -1.4188 -1.5665 27 1 -1.2862 -3.5018 -2.1970 28 1 -0.4552 -5.6652 -1.3747 29 1 2.4114 -6.0853 0.7745 30 1 0.6782 -7.8550 -2.2625 31 1 2.2638 -7.1172 -1.9006 32 1 1.8741 -9.8527 -2.1086 33 1 3.1491 -9.1215 -1.0862 34 1 0.3496 -10.0640 -0.2521 35 1 1.9238 -10.4334 0.5226 36 1 -0.1241 -7.5251 2.2943 37 1 -0.8370 -8.8262 1.3108 38 1 -0.3537 -9.5649 3.5492 39 1 0.6350 -10.3673 2.4791 40 1 2.6959 -3.6911 0.7339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313411234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = 2.433690 kcal Electronic energy + Delta-G solvation = -19142.743429 eV Core-core repulsion = 16341.631474 eV Total energy + Delta-G solvation = -2801.111955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.13229 -37.28016 -34.61800 -33.84442 -32.59497 -29.72558 -28.95159 -28.31942 -26.11302 -25.11954 -23.34981 -21.01087 -20.75012 -19.93573 -19.35521 -17.24850 -16.17369 -16.02914 -15.35916 -14.93517 -14.70202 -14.46666 -14.34995 -13.67665 -13.14830 -12.91183 -12.70699 -12.52036 -12.24427 -12.06930 -11.47056 -11.40366 -11.02720 -11.01020 -10.93514 -10.68459 -10.62020 -10.54288 -10.44081 -10.24170 -9.69274 -9.25985 -9.16212 -8.81835 -8.67156 -7.33807 -6.67060 -6.14369 -4.26711 2.87970 3.12616 3.18451 3.26552 3.41406 4.00189 4.23452 4.38609 4.64412 4.77326 4.78758 4.88293 5.31613 5.38332 5.52820 5.56878 5.61819 5.73757 5.80252 5.86567 5.92602 6.03383 6.07201 6.33267 6.34695 6.39622 6.48925 6.62040 6.99974 7.09030 7.14342 7.16223 7.29494 7.39567 7.46186 7.85421 7.96916 8.19382 8.30550 8.57025 8.71276 8.84306 9.04808 9.17321 10.29029 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.004163 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.121497 B = 6723.908893 C = 6913.843972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.141 3.859 10 C -0.199 4.199 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.226 3.774 14 N -0.754 5.754 15 C 0.164 3.836 16 H 0.076 0.924 17 C -0.140 4.140 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.096 4.096 21 H 0.085 0.915 22 C 0.069 3.931 23 N -0.851 5.851 24 C -0.290 4.290 25 H 0.278 0.722 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.387 0.613 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.339 0.661 39 H 0.337 0.663 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 -14.745 0.370 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.138 3.862 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.128 3.872 14 N -0.387 5.387 15 C 0.056 3.944 16 H 0.094 0.906 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.115 4.115 21 H 0.104 0.896 22 C -0.062 4.062 23 N -0.380 5.380 24 C -0.314 4.314 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.220 0.780 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.588 -14.169 0.481 14.189 hybrid contribution -0.297 0.255 -0.126 0.411 sum 0.291 -13.914 0.355 13.922 Atomic orbital electron populations 1.69872 1.07539 1.28796 1.35635 1.25882 0.94661 1.01140 0.92290 0.86330 0.81054 0.81255 0.78442 1.18473 1.19790 1.20109 1.19583 0.97976 0.91245 1.40655 0.90657 1.17341 0.90320 0.91309 0.87196 1.21158 1.00579 0.96593 1.03655 1.20435 0.97670 0.92978 0.98416 1.19861 1.03181 0.96408 1.13007 1.17468 0.92818 0.84107 0.92837 1.44599 1.34038 1.02603 1.57420 1.21255 0.97094 0.84141 0.91869 0.90634 1.22723 1.00960 0.96055 0.98221 1.22315 0.99722 0.96704 0.97217 1.22532 1.00284 0.96807 0.96185 1.22267 0.99322 0.94814 0.95134 0.89637 1.21834 0.95453 0.96759 0.92111 1.58716 1.46877 1.13542 1.18849 1.20401 1.06399 0.91636 1.12965 0.91157 0.86858 0.89808 0.89739 0.77958 0.92001 0.90861 0.92097 0.91809 0.91811 0.91606 0.90536 0.95553 0.84861 0.85135 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.11 10.95 55.55 0.61 -20.50 16 2 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 3 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.74 9.05 -37.74 -0.34 -13.08 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.90 5.57 -106.85 -0.60 3.30 16 10 C -0.20 -5.38 8.69 -38.84 -0.34 -5.72 16 11 C -0.08 -1.85 10.02 -39.69 -0.40 -2.25 16 12 C -0.30 -6.92 9.22 -39.08 -0.36 -7.28 16 13 C 0.23 5.12 6.64 -83.86 -0.56 4.56 16 14 N -0.75 -13.56 5.17 -51.14 -0.26 -13.83 16 15 C 0.16 2.43 2.46 -66.82 -0.16 2.26 16 16 H 0.08 1.22 6.20 -51.93 -0.32 0.90 16 17 C -0.14 -1.92 6.59 -25.61 -0.17 -2.09 16 18 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 19 C -0.12 -1.20 5.69 -24.74 -0.14 -1.34 16 20 C -0.10 -1.16 2.79 -88.96 -0.25 -1.41 16 21 H 0.09 1.12 7.73 -51.93 -0.40 0.71 16 22 C 0.07 0.81 6.12 -3.82 -0.02 0.78 16 23 N -0.85 -8.47 9.62 -10.37 -0.10 -8.57 16 24 C -0.29 -7.34 9.63 -38.67 -0.37 -7.71 16 25 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 26 H 0.11 3.16 6.16 -52.49 -0.32 2.83 16 27 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.08 1.75 6.23 -52.49 -0.33 1.43 16 29 H 0.39 6.55 8.35 -40.82 -0.34 6.21 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 35 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.29 8.02 -51.93 -0.42 -0.13 16 38 H 0.34 2.87 9.08 -39.29 -0.36 2.51 16 39 H 0.34 2.82 8.28 -39.29 -0.33 2.49 16 40 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -28.49 319.96 -10.07 -38.56 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.14 Total: 14.94 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -3.97 Total: -29.54 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.24 Total: -42.90 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.49 -10.07 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.992 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds