Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48496 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46975 * 299.99695 * 3 2 1 6 6 H 1.48503 * 109.47276 * 59.99361 * 3 2 1 7 7 C 1.39932 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00143 * 197.74318 * 7 2 1 9 9 C 1.41411 * 119.99647 * 17.46450 * 7 2 1 10 10 C 1.40786 * 120.20880 * 24.76370 * 9 7 2 11 11 C 1.37638 * 119.89525 * 180.02562 * 10 9 7 12 12 C 1.38530 * 120.32656 * 359.97438 * 11 10 9 13 13 C 1.39290 * 120.41865 * 0.03067 * 12 11 10 14 14 N 1.39689 * 119.94416 * 179.97438 * 13 12 11 15 15 C 1.46490 * 120.00398 * 359.97438 * 14 13 12 16 16 H 1.09003 * 110.01657 * 325.06384 * 15 14 13 17 17 C 1.53877 * 110.03186 * 86.45727 * 15 14 13 18 18 C 1.54265 * 106.59772 * 119.28555 * 17 15 14 19 19 C 1.54892 * 104.19726 * 23.61152 * 18 17 15 20 20 C 1.54269 * 110.03367 * 203.62604 * 15 14 13 21 21 H 1.09001 * 110.48391 * 335.77774 * 20 15 14 22 22 C 1.52994 * 110.48852 * 98.42649 * 20 15 14 23 23 N 1.46905 * 109.47078 * 185.00072 * 22 20 15 24 24 C 1.38321 * 120.10105 * 359.66799 * 13 12 11 25 25 H 0.96997 * 119.99869 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05112 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83973 * 180.02562 * 11 10 9 28 28 H 1.07993 * 119.78698 * 180.02562 * 12 11 10 29 29 H 0.97008 * 119.99303 * 180.02562 * 14 13 12 30 30 H 1.08998 * 110.02920 * 238.56692 * 17 15 14 31 31 H 1.08998 * 110.02990 * 359.95160 * 17 15 14 32 32 H 1.09000 * 110.48802 * 142.28599 * 18 17 15 33 33 H 1.08994 * 110.48863 * 264.79791 * 18 17 15 34 34 H 1.08999 * 110.75967 * 80.37171 * 19 18 17 35 35 H 1.08998 * 110.75618 * 203.55905 * 19 18 17 36 36 H 1.09001 * 109.47344 * 305.00071 * 22 20 15 37 37 H 1.09006 * 109.47024 * 65.00209 * 22 20 15 38 38 H 1.00900 * 110.99871 * 179.97438 * 23 22 20 39 39 H 1.00900 * 110.99916 * 303.95175 * 23 22 20 40 40 H 1.08001 * 120.16439 * 180.32051 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0494 -1.2339 0.2856 9 6 1.3498 -2.4084 -0.3665 10 6 0.2178 -2.3664 -1.2025 11 6 -0.4182 -3.5350 -1.5553 12 6 0.0503 -4.7536 -1.0921 13 6 1.1690 -4.8106 -0.2642 14 7 1.6325 -6.0448 0.1976 15 6 0.9420 -7.2777 -0.1884 16 1 -0.1303 -7.0969 -0.2637 17 6 1.4864 -7.7876 -1.5343 18 6 2.0766 -9.1879 -1.2689 19 6 1.3369 -9.6776 0.0008 20 6 1.2204 -8.3860 0.8479 21 1 2.1542 -8.1898 1.3747 22 6 0.0590 -8.4978 1.8376 23 7 0.3980 -9.4733 2.8823 24 6 1.8253 -3.6476 0.0962 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1509 -1.4188 -1.5665 27 1 -1.2862 -3.5018 -2.1970 28 1 -0.4552 -5.6652 -1.3747 29 1 2.4114 -6.0853 0.7745 30 1 0.6782 -7.8550 -2.2625 31 1 2.2638 -7.1172 -1.9006 32 1 1.8741 -9.8527 -2.1086 33 1 3.1491 -9.1215 -1.0862 34 1 0.3496 -10.0640 -0.2521 35 1 1.9238 -10.4334 0.5226 36 1 -0.1241 -7.5251 2.2943 37 1 -0.8370 -8.8262 1.3108 38 1 -0.3537 -9.5649 3.5492 39 1 0.6350 -10.3673 2.4791 40 1 2.6959 -3.6911 0.7339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313411234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -15.107576 kcal Electronic energy + Delta-G solvation = -19143.504075 eV Core-core repulsion = 16341.631474 eV Total energy + Delta-G solvation = -2801.872601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39604 -38.96819 -36.15319 -35.07705 -34.21377 -31.68412 -30.20500 -29.54148 -27.54707 -27.06907 -24.36976 -22.79056 -22.31622 -21.14899 -20.67126 -19.09878 -17.43729 -17.33873 -16.89464 -16.42621 -16.26179 -15.78550 -15.37835 -15.03123 -14.74618 -14.32628 -14.02392 -13.90532 -13.75787 -13.61763 -13.21983 -12.85191 -12.70356 -12.46602 -12.26542 -12.12419 -11.95251 -11.64228 -11.56062 -11.51523 -11.42442 -11.16262 -11.03936 -10.41861 -9.61685 -9.33360 -8.60676 -7.91176 -6.32424 1.04614 1.35071 1.39005 1.53820 1.59128 2.22971 2.79622 2.81748 3.44794 3.68049 3.85783 3.88692 3.95628 4.37348 4.41741 4.46475 4.50294 4.57838 4.66662 4.73135 4.77435 4.84958 5.01037 5.08158 5.13253 5.16029 5.17675 5.23885 5.29509 5.39254 5.44446 5.48428 5.62415 5.97566 6.03993 6.21137 6.22353 6.32636 6.62824 6.64610 6.91415 7.02869 7.07179 7.26436 8.37867 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.004163 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.121497 B = 6723.908893 C = 6913.843972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.113 3.887 10 C -0.232 4.232 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.237 3.763 14 N -0.745 5.745 15 C 0.157 3.843 16 H 0.065 0.935 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.088 4.088 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.854 5.854 24 C -0.315 4.315 25 H 0.287 0.713 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.392 0.608 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.349 0.651 39 H 0.349 0.651 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -16.679 0.356 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.136 3.864 14 N -0.376 5.376 15 C 0.051 3.949 16 H 0.083 0.917 17 C -0.179 4.179 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.108 4.108 21 H 0.095 0.905 22 C -0.057 4.057 23 N -0.386 5.386 24 C -0.339 4.339 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.685 -16.171 0.478 16.192 hybrid contribution -0.368 0.693 -0.101 0.791 sum 0.318 -15.478 0.377 15.486 Atomic orbital electron populations 1.69926 1.09032 1.30280 1.35796 1.26757 0.95472 1.04458 0.91155 0.85174 0.79357 0.76219 0.78993 1.18309 1.18766 1.18943 1.19830 0.98106 0.92656 1.42755 0.91127 1.17701 0.91045 0.92409 0.87812 1.21084 1.01837 0.96856 1.05541 1.20727 0.97924 0.92710 0.98097 1.20140 1.03096 0.96873 1.12396 1.17523 0.92061 0.85145 0.91674 1.44698 1.34042 1.02263 1.56572 1.21513 0.96150 0.83469 0.93746 0.91669 1.22661 1.00466 0.97491 0.97233 1.22288 0.99681 0.94960 0.98396 1.22504 1.01250 0.95806 0.95152 1.22177 0.98998 0.94904 0.94705 0.90469 1.21685 0.95650 0.96087 0.92310 1.58643 1.47410 1.13936 1.18573 1.20517 1.07155 0.92225 1.14011 0.90291 0.88639 0.87510 0.87146 0.77350 0.91618 0.93201 0.90262 0.91730 0.90540 0.89637 0.93242 0.94600 0.83812 0.83762 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.16 10.95 21.82 0.24 -44.92 16 2 C 0.04 1.92 5.14 85.25 0.44 2.36 16 3 Si 0.98 39.88 29.59 68.60 2.03 41.91 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.11 6.52 5.57 -21.31 -0.12 6.40 16 10 C -0.23 -13.03 8.69 22.75 0.20 -12.83 16 11 C -0.08 -3.72 10.02 22.20 0.22 -3.50 16 12 C -0.30 -13.73 9.22 22.59 0.21 -13.52 16 13 C 0.24 10.82 6.64 38.16 0.25 11.08 16 14 N -0.74 -26.47 5.17 -315.70 -1.63 -28.10 16 15 C 0.16 4.42 2.46 45.72 0.11 4.53 16 16 H 0.07 1.99 6.20 -2.39 -0.01 1.98 16 17 C -0.14 -3.55 6.59 31.32 0.21 -3.35 16 18 C -0.12 -2.14 6.83 31.67 0.22 -1.93 16 19 C -0.11 -1.77 5.69 31.89 0.18 -1.59 16 20 C -0.09 -1.94 2.79 -9.72 -0.03 -1.96 16 21 H 0.08 1.86 7.73 -2.39 -0.02 1.84 16 22 C 0.07 1.58 6.12 86.30 0.53 2.11 16 23 N -0.85 -14.93 9.62 -186.71 -1.80 -16.72 16 24 C -0.31 -16.47 9.63 22.86 0.22 -16.25 16 25 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 26 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 27 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 28 H 0.11 4.40 6.23 -2.91 -0.02 4.38 16 29 H 0.39 13.18 8.35 -92.70 -0.77 12.41 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.51 7.92 -2.39 -0.02 1.49 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 35 H 0.09 1.13 8.05 -2.39 -0.02 1.11 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.04 0.70 8.02 -2.38 -0.02 0.68 16 38 H 0.35 5.12 9.08 -89.69 -0.81 4.30 16 39 H 0.35 4.69 8.28 -89.69 -0.74 3.95 16 40 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -63.62 319.96 0.42 -63.20 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -1.27 Total: 41.70 kcal Atomic # 6 Polarization: -59.91 SS G_CDS: 2.85 Total: -57.06 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -3.19 Total: -89.75 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -63.62 0.42 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.088 kcal (2) G-P(sol) polarization free energy of solvation -63.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds