Wall clock time and date at job start Mon Mar 30 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48500 * 109.46786 * 270.00123 * 3 2 1 5 5 H 1.48492 * 109.47240 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47007 * 150.00457 * 3 2 1 7 7 C 1.39934 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00367 * 197.83436 * 7 2 1 9 9 C 1.41411 * 119.99829 * 17.84439 * 7 2 1 10 10 C 1.40781 * 120.20606 * 204.34919 * 9 7 2 11 11 C 1.37651 * 119.89441 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32450 * 0.02562 * 11 10 9 13 13 C 1.39298 * 120.42682 * 359.97438 * 12 11 10 14 14 N 1.39684 * 119.95580 * 180.02562 * 13 12 11 15 15 C 1.46505 * 119.99651 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.46713 * 180.02562 * 15 14 13 17 17 C 1.53118 * 109.52556 * 294.68233 * 16 15 14 18 18 C 1.53033 * 109.28206 * 182.44513 * 17 16 15 19 19 N 1.46846 * 109.52497 * 59.17884 * 18 17 16 20 20 C 1.46846 * 111.19718 * 298.25915 * 19 18 17 21 21 C 1.53035 * 109.52353 * 61.74126 * 20 19 18 22 22 C 1.38323 * 120.09148 * 0.02570 * 13 12 11 23 23 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05677 * 0.03667 * 10 9 7 25 25 H 1.08000 * 119.83837 * 179.97438 * 11 10 9 26 26 H 1.08003 * 119.78784 * 179.97438 * 12 11 10 27 27 H 0.97002 * 120.00085 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46861 * 299.99923 * 15 14 13 29 29 H 1.08998 * 109.47094 * 60.00401 * 15 14 13 30 30 H 1.09004 * 109.52612 * 54.87426 * 16 15 14 31 31 H 1.09001 * 109.50181 * 302.38528 * 17 16 15 32 32 H 1.09003 * 109.50490 * 62.50133 * 17 16 15 33 33 H 1.09007 * 109.46106 * 299.16194 * 18 17 16 34 34 H 1.08999 * 109.46775 * 179.19707 * 18 17 16 35 35 H 1.00900 * 111.00054 * 62.35535 * 19 18 17 36 36 H 1.09008 * 109.46566 * 301.72956 * 20 19 18 37 37 H 1.08994 * 109.45834 * 181.75546 * 20 19 18 38 38 H 1.09002 * 109.50435 * 180.88357 * 21 20 19 39 39 H 1.08997 * 109.50339 * 60.76133 * 21 20 19 40 40 H 1.08002 * 120.15823 * 179.70750 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2870 9 6 1.3519 -2.4072 -0.3742 10 6 1.8270 -3.6501 0.0857 11 6 1.1837 -4.8097 -0.2835 12 6 0.0706 -4.7604 -1.1064 13 6 -0.4110 -3.5380 -1.5692 14 7 -1.5346 -3.4997 -2.3982 15 6 -2.2060 -4.7447 -2.7798 16 6 -3.3975 -4.4248 -3.6847 17 6 -4.4437 -3.6352 -2.8932 18 6 -5.6588 -3.3710 -3.7852 19 7 -6.2230 -4.6492 -4.2372 20 6 -5.2520 -5.4041 -5.0396 21 6 -4.0248 -5.7289 -4.1850 22 6 0.2220 -2.3620 -1.2091 23 1 -0.4850 0.8400 0.0004 24 1 2.6946 -3.6937 0.7273 25 1 1.5492 -5.7627 0.0695 26 1 -0.4272 -5.6757 -1.3910 27 1 -1.8703 -2.6489 -2.7212 28 1 -1.5056 -5.3859 -3.3149 29 1 -2.5569 -5.2575 -1.8842 30 1 -3.0602 -3.8329 -4.5356 31 1 -4.7513 -4.2116 -2.0207 32 1 -4.0159 -2.6859 -2.5706 33 1 -5.3531 -2.7827 -4.6505 34 1 -6.4116 -2.8213 -3.2203 35 1 -6.5495 -5.1970 -3.4553 36 1 -4.9481 -4.8063 -5.8990 37 1 -5.7094 -6.3310 -5.3855 38 1 -3.2976 -6.2756 -4.7853 39 1 -4.3258 -6.3383 -3.3328 40 1 -0.1477 -1.4140 -1.5711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313412709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:36 Heat of formation + Delta-G solvation = 2.110578 kcal Electronic energy + Delta-G solvation = -19050.326811 eV Core-core repulsion = 16249.200845 eV Total energy + Delta-G solvation = -2801.125966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23252 -37.65051 -35.13525 -33.42567 -31.89942 -30.94578 -29.41159 -28.03683 -25.34038 -25.03485 -23.00153 -22.17651 -20.96901 -20.10909 -19.79016 -17.19150 -16.32633 -15.70807 -15.04913 -14.80471 -14.73399 -14.50393 -14.29315 -14.13500 -13.28657 -13.04270 -12.76622 -12.54170 -12.27645 -12.15836 -11.99364 -11.54535 -11.35084 -11.13178 -11.03989 -10.99095 -10.66594 -10.55061 -10.46870 -10.31237 -9.60257 -9.42655 -9.22302 -8.73400 -8.52713 -7.29427 -6.71366 -6.14013 -4.29624 2.88254 3.10712 3.14445 3.24724 3.36011 3.98921 4.12885 4.27715 4.61610 4.74461 4.83106 4.85556 5.02471 5.26268 5.28070 5.38828 5.64675 5.66106 5.74341 5.81403 5.84402 5.89349 5.99010 6.07925 6.16572 6.29025 6.36487 6.60328 6.84641 6.90092 7.13241 7.15750 7.19101 7.39637 7.46339 7.83352 7.98198 8.12679 8.19368 8.51110 8.73171 8.86047 9.03174 9.14079 10.27384 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.004485 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.348583 B = 6241.996033 C = 7173.852096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.215 3.785 14 N -0.760 5.760 15 C 0.144 3.856 16 C -0.096 4.096 17 C -0.151 4.151 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.058 3.942 21 C -0.150 4.150 22 C -0.232 4.232 23 H 0.277 0.723 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.388 0.612 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.339 0.661 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 -5.865 -7.515 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.117 3.883 14 N -0.394 5.394 15 C 0.018 3.982 16 C -0.115 4.115 17 C -0.190 4.190 18 C -0.074 4.074 19 N -0.316 5.316 20 C -0.072 4.072 21 C -0.190 4.190 22 C -0.256 4.256 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.222 0.778 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.254 -5.626 -8.064 14.206 hybrid contribution 0.924 0.738 0.729 1.389 sum -9.329 -4.888 -7.335 12.835 Atomic orbital electron populations 1.69868 1.07510 1.28723 1.35773 1.25869 0.94663 1.01063 0.92308 0.86383 0.80583 0.80922 0.79205 1.19405 1.20453 1.18677 1.19567 0.98090 0.91313 1.40583 0.90581 1.17320 0.90092 0.91829 0.87199 1.20862 1.04816 0.92935 1.09178 1.20281 0.95145 0.96247 0.96856 1.19875 1.04564 0.94361 1.13474 1.17657 0.86318 0.94306 0.90053 1.44414 1.31810 1.06370 1.56763 1.21046 0.92276 0.88210 0.96636 1.21375 0.95120 0.96645 0.98398 1.22288 0.96648 1.01404 0.98663 1.22042 0.95168 0.91810 0.98372 1.60690 1.37780 1.06308 1.26866 1.22009 0.90800 0.98110 0.96303 1.22240 0.98955 0.97281 1.00475 1.20717 1.02674 0.95003 1.07188 0.91236 0.89402 0.89682 0.89795 0.77829 0.93546 0.93611 0.90833 0.91887 0.90832 0.91013 0.90778 0.84352 0.90997 0.90832 0.91228 0.91792 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.84 10.96 55.55 0.61 -20.23 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.47 -12.72 9.05 -37.74 -0.34 -13.06 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.83 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.62 9.79 -38.84 -0.38 -7.00 16 11 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 12 C -0.30 -6.97 9.32 -39.09 -0.36 -7.34 16 13 C 0.22 5.10 6.64 -83.85 -0.56 4.54 16 14 N -0.76 -14.52 5.49 -58.68 -0.32 -14.84 16 15 C 0.14 2.23 4.30 -4.04 -0.02 2.21 16 16 C -0.10 -1.16 2.29 -90.50 -0.21 -1.36 16 17 C -0.15 -1.76 5.21 -26.65 -0.14 -1.90 16 18 C 0.06 0.57 6.55 -3.84 -0.03 0.54 16 19 N -0.69 -6.67 6.87 -113.82 -0.78 -7.45 16 20 C 0.06 0.52 6.55 -3.84 -0.03 0.50 16 21 C -0.15 -1.48 5.36 -26.65 -0.14 -1.63 16 22 C -0.23 -6.14 8.53 -38.67 -0.33 -6.47 16 23 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 24 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 25 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.08 1.77 6.70 -52.48 -0.35 1.42 16 27 H 0.39 7.09 7.70 -40.82 -0.31 6.77 16 28 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.05 0.75 7.94 -51.93 -0.41 0.33 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.97 7.27 -51.93 -0.38 0.59 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.34 2.99 8.86 -39.29 -0.35 2.64 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -28.31 318.58 -10.65 -38.96 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.32 Total: 12.54 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.61 Total: -27.78 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.49 Total: -42.52 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.31 -10.65 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.070 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds