Wall clock time and date at job start Mon Mar 30 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48500 * 109.46786 * 270.00123 * 3 2 1 5 5 H 1.48492 * 109.47240 * 30.00193 * 3 2 1 6 6 H 1.48498 * 109.47007 * 150.00457 * 3 2 1 7 7 C 1.39934 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00367 * 197.83436 * 7 2 1 9 9 C 1.41411 * 119.99829 * 17.84439 * 7 2 1 10 10 C 1.40781 * 120.20606 * 204.34919 * 9 7 2 11 11 C 1.37651 * 119.89441 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32450 * 0.02562 * 11 10 9 13 13 C 1.39298 * 120.42682 * 359.97438 * 12 11 10 14 14 N 1.39684 * 119.95580 * 180.02562 * 13 12 11 15 15 C 1.46505 * 119.99651 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.46713 * 180.02562 * 15 14 13 17 17 C 1.53118 * 109.52556 * 294.68233 * 16 15 14 18 18 C 1.53033 * 109.28206 * 182.44513 * 17 16 15 19 19 N 1.46846 * 109.52497 * 59.17884 * 18 17 16 20 20 C 1.46846 * 111.19718 * 298.25915 * 19 18 17 21 21 C 1.53035 * 109.52353 * 61.74126 * 20 19 18 22 22 C 1.38323 * 120.09148 * 0.02570 * 13 12 11 23 23 H 0.96997 * 119.99894 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.05677 * 0.03667 * 10 9 7 25 25 H 1.08000 * 119.83837 * 179.97438 * 11 10 9 26 26 H 1.08003 * 119.78784 * 179.97438 * 12 11 10 27 27 H 0.97002 * 120.00085 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46861 * 299.99923 * 15 14 13 29 29 H 1.08998 * 109.47094 * 60.00401 * 15 14 13 30 30 H 1.09004 * 109.52612 * 54.87426 * 16 15 14 31 31 H 1.09001 * 109.50181 * 302.38528 * 17 16 15 32 32 H 1.09003 * 109.50490 * 62.50133 * 17 16 15 33 33 H 1.09007 * 109.46106 * 299.16194 * 18 17 16 34 34 H 1.08999 * 109.46775 * 179.19707 * 18 17 16 35 35 H 1.00900 * 111.00054 * 62.35535 * 19 18 17 36 36 H 1.09008 * 109.46566 * 301.72956 * 20 19 18 37 37 H 1.08994 * 109.45834 * 181.75546 * 20 19 18 38 38 H 1.09002 * 109.50435 * 180.88357 * 21 20 19 39 39 H 1.08997 * 109.50339 * 60.76133 * 21 20 19 40 40 H 1.08002 * 120.15823 * 179.70750 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2870 9 6 1.3519 -2.4072 -0.3742 10 6 1.8270 -3.6501 0.0857 11 6 1.1837 -4.8097 -0.2835 12 6 0.0706 -4.7604 -1.1064 13 6 -0.4110 -3.5380 -1.5692 14 7 -1.5346 -3.4997 -2.3982 15 6 -2.2060 -4.7447 -2.7798 16 6 -3.3975 -4.4248 -3.6847 17 6 -4.4437 -3.6352 -2.8932 18 6 -5.6588 -3.3710 -3.7852 19 7 -6.2230 -4.6492 -4.2372 20 6 -5.2520 -5.4041 -5.0396 21 6 -4.0248 -5.7289 -4.1850 22 6 0.2220 -2.3620 -1.2091 23 1 -0.4850 0.8400 0.0004 24 1 2.6946 -3.6937 0.7273 25 1 1.5492 -5.7627 0.0695 26 1 -0.4272 -5.6757 -1.3910 27 1 -1.8703 -2.6489 -2.7212 28 1 -1.5056 -5.3859 -3.3149 29 1 -2.5569 -5.2575 -1.8842 30 1 -3.0602 -3.8329 -4.5356 31 1 -4.7513 -4.2116 -2.0207 32 1 -4.0159 -2.6859 -2.5706 33 1 -5.3531 -2.7827 -4.6505 34 1 -6.4116 -2.8213 -3.2203 35 1 -6.5495 -5.1970 -3.4553 36 1 -4.9481 -4.8063 -5.8990 37 1 -5.7094 -6.3310 -5.3855 38 1 -3.2976 -6.2756 -4.7853 39 1 -4.3258 -6.3383 -3.3328 40 1 -0.1477 -1.4140 -1.5711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313412709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:36 Heat of formation + Delta-G solvation = -14.977091 kcal Electronic energy + Delta-G solvation = -19051.067788 eV Core-core repulsion = 16249.200845 eV Total energy + Delta-G solvation = -2801.866943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28084 -39.34919 -36.66396 -35.23283 -33.18463 -31.79125 -31.35627 -29.62539 -27.16805 -26.46403 -23.86918 -23.40094 -22.61386 -21.60248 -21.11785 -19.08479 -17.74737 -16.94010 -16.64886 -16.46455 -16.05421 -15.59798 -15.52282 -15.20091 -14.66640 -14.61221 -14.30812 -13.99770 -13.78325 -13.40957 -13.13467 -13.11126 -12.78514 -12.67792 -12.45868 -12.18145 -12.14909 -12.02473 -11.59606 -11.52124 -11.37804 -11.24759 -11.07497 -10.50121 -9.32653 -9.27423 -8.63377 -7.92771 -6.33771 1.06932 1.31361 1.37834 1.50865 1.57572 2.22243 2.76767 2.82727 3.39321 3.66599 3.81897 3.85747 3.92138 4.18620 4.37251 4.41875 4.47534 4.50905 4.65396 4.69663 4.76143 4.85014 4.91589 4.97591 4.99128 5.05124 5.10846 5.18713 5.19454 5.28620 5.37854 5.43803 5.58881 5.94295 6.07231 6.08890 6.19738 6.24302 6.48201 6.56579 6.92443 7.03174 7.04796 7.22861 8.37145 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.004485 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.348583 B = 6241.996033 C = 7173.852096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.109 3.891 10 C -0.285 4.285 11 C -0.062 4.062 12 C -0.305 4.305 13 C 0.218 3.782 14 N -0.753 5.753 15 C 0.143 3.857 16 C -0.088 4.088 17 C -0.146 4.146 18 C 0.062 3.938 19 N -0.691 5.691 20 C 0.060 3.940 21 C -0.143 4.143 22 C -0.261 4.261 23 H 0.285 0.715 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.391 0.609 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.346 0.654 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 -6.542 -8.404 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.306 4.306 11 C -0.081 4.081 12 C -0.327 4.327 13 C 0.117 3.883 14 N -0.385 5.385 15 C 0.019 3.981 16 C -0.107 4.107 17 C -0.186 4.186 18 C -0.068 4.068 19 N -0.319 5.319 20 C -0.069 4.069 21 C -0.183 4.183 22 C -0.285 4.285 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.225 0.775 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.254 -6.332 -8.971 15.723 hybrid contribution 1.143 0.834 0.983 1.723 sum -10.110 -5.498 -7.988 14.009 Atomic orbital electron populations 1.69922 1.08936 1.30133 1.35814 1.26715 0.95473 1.04293 0.91209 0.85242 0.79123 0.76085 0.79449 1.18756 1.19166 1.18323 1.19824 0.98267 0.92720 1.42656 0.91001 1.17717 0.90957 0.92858 0.87886 1.21030 1.05792 0.93354 1.10427 1.20650 0.94623 0.96945 0.95892 1.20209 1.04493 0.95058 1.12976 1.17793 0.86967 0.93755 0.89785 1.44532 1.30514 1.08069 1.55396 1.21237 0.93274 0.86506 0.97132 1.21306 0.93842 0.98027 0.97485 1.22240 0.97228 1.00272 0.98841 1.21972 0.94506 0.92324 0.97971 1.60696 1.37787 1.06263 1.27174 1.22037 0.90272 0.98762 0.95860 1.22204 0.99384 0.95860 1.00806 1.20653 1.03706 0.95398 1.08723 0.90437 0.89139 0.86361 0.87192 0.77534 0.93335 0.93957 0.91033 0.92309 0.92741 0.91149 0.90185 0.83637 0.91161 0.89095 0.90460 0.91463 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.26 10.96 21.82 0.24 -44.02 16 2 C 0.04 1.98 5.14 85.25 0.44 2.42 16 3 Si 0.98 39.46 29.60 68.60 2.03 41.49 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.60 9.05 23.46 0.21 -28.38 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 10 C -0.29 -14.95 9.79 22.75 0.22 -14.73 16 11 C -0.06 -2.90 10.02 22.20 0.22 -2.67 16 12 C -0.30 -13.81 9.32 22.59 0.21 -13.60 16 13 C 0.22 10.38 6.64 38.17 0.25 10.63 16 14 N -0.75 -28.57 5.49 -339.57 -1.86 -30.43 16 15 C 0.14 4.21 4.30 86.38 0.37 4.59 16 16 C -0.09 -1.96 2.29 -10.71 -0.02 -1.99 16 17 C -0.15 -3.27 5.21 30.64 0.16 -3.11 16 18 C 0.06 1.16 6.55 86.32 0.57 1.73 16 19 N -0.69 -11.75 6.87 -514.01 -3.53 -15.28 16 20 C 0.06 0.93 6.55 86.33 0.57 1.49 16 21 C -0.14 -2.46 5.36 30.65 0.16 -2.29 16 22 C -0.26 -14.24 8.53 22.86 0.19 -14.04 16 23 H 0.29 13.84 8.30 -92.71 -0.77 13.08 16 24 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 25 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 26 H 0.11 4.36 6.70 -2.91 -0.02 4.34 16 27 H 0.39 14.40 7.70 -92.71 -0.71 13.69 16 28 H 0.05 1.44 7.94 -2.39 -0.02 1.42 16 29 H 0.04 1.30 7.94 -2.39 -0.02 1.28 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.42 7.27 -2.39 -0.02 1.40 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.35 5.23 8.86 -89.69 -0.79 4.44 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 Total: -1.00 -61.87 318.58 -0.16 -62.03 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.47 Total: 40.09 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.44 Total: -53.87 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -5.15 Total: -89.72 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -61.87 -0.16 -62.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313412709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.050 kcal (2) G-P(sol) polarization free energy of solvation -61.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds