Wall clock time and date at job start Mon Mar 30 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48493 * 109.47385 * 274.66304 * 3 2 1 5 5 H 1.48503 * 109.47034 * 34.66306 * 3 2 1 6 6 H 1.48503 * 109.47194 * 154.66082 * 3 2 1 7 7 C 1.39935 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 162.20334 * 7 2 1 9 9 C 1.41401 * 119.99599 * 342.20315 * 7 2 1 10 10 C 1.40789 * 120.20959 * 335.25035 * 9 7 2 11 11 C 1.37646 * 119.89320 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32681 * 359.72285 * 11 10 9 13 13 C 1.39291 * 120.42107 * 0.54890 * 12 11 10 14 14 N 1.39683 * 119.95112 * 179.72365 * 13 12 11 15 15 C 1.46503 * 120.00012 * 359.72592 * 14 13 12 16 16 H 1.09001 * 109.47221 * 325.00930 * 15 14 13 17 17 C 1.53005 * 109.46505 * 85.00145 * 15 14 13 18 18 C 1.53005 * 109.46619 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47045 * 299.99852 * 18 17 15 20 20 C 1.52996 * 109.47165 * 60.00519 * 19 18 17 21 21 H 1.08994 * 109.47347 * 59.99840 * 20 19 18 22 22 N 1.46897 * 109.47239 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47448 * 204.99820 * 15 14 13 24 24 C 1.38317 * 120.09627 * 359.45704 * 13 12 11 25 25 H 0.96999 * 120.00080 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05533 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83886 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.79018 * 180.27652 * 12 11 10 29 29 H 0.96993 * 119.99999 * 179.73328 * 14 13 12 30 30 H 1.09001 * 109.46989 * 299.99659 * 17 15 14 31 31 H 1.08994 * 109.47316 * 60.00207 * 17 15 14 32 32 H 1.09007 * 109.46891 * 180.02562 * 18 17 15 33 33 H 1.08994 * 109.47341 * 59.99935 * 18 17 15 34 34 H 1.09003 * 109.47243 * 300.00264 * 19 18 17 35 35 H 1.09002 * 109.46764 * 180.02562 * 19 18 17 36 36 H 1.00899 * 110.99874 * 299.99666 * 22 20 19 37 37 H 1.00903 * 111.00320 * 63.94901 * 22 20 19 38 38 H 1.09007 * 109.46579 * 60.00557 * 23 15 14 39 39 H 1.08994 * 109.47295 * 300.00358 * 23 15 14 40 40 H 1.08000 * 120.16017 * 180.24830 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1034 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2118 -0.0005 8 1 3.0492 -1.2340 -0.2864 9 6 1.3518 -2.4072 0.3732 10 6 0.2238 -2.3629 1.2146 11 6 -0.4103 -3.5305 1.5739 12 6 0.0523 -4.7500 1.1071 13 6 1.1704 -4.8099 0.2786 14 7 1.6319 -6.0453 -0.1818 15 6 0.9436 -7.2773 0.2116 16 1 0.5735 -7.1767 1.2320 17 6 -0.2321 -7.5290 -0.7346 18 6 -0.9514 -8.8152 -0.3234 19 6 0.0244 -9.9914 -0.3981 20 6 1.2000 -9.7397 0.5481 21 1 0.8300 -9.6388 1.5684 22 7 2.1371 -10.8686 0.4759 23 6 1.9195 -8.4531 0.1364 24 6 1.8211 -3.6474 -0.0934 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1433 -1.4143 1.5775 27 1 -1.2753 -3.4955 2.2197 28 1 -0.4546 -5.6605 1.3909 29 1 2.4081 -6.0875 -0.7619 30 1 -0.9275 -6.6912 -0.6810 31 1 0.1378 -7.6294 -1.7550 32 1 -1.7887 -8.9948 -0.9978 33 1 -1.3213 -8.7144 0.6969 34 1 0.3943 -10.0923 -1.4185 35 1 -0.4882 -10.9078 -0.1055 36 1 1.6859 -11.7307 0.7428 37 1 2.5434 -10.9431 -0.4447 38 1 2.7571 -8.2737 0.8106 39 1 2.2894 -8.5536 -0.8839 40 1 2.6857 -3.6923 -0.7390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313413588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:11 Heat of formation + Delta-G solvation = -1.746590 kcal Electronic energy + Delta-G solvation = -19128.549317 eV Core-core repulsion = 16327.256091 eV Total energy + Delta-G solvation = -2801.293225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23350 -37.43574 -34.97301 -33.38252 -32.56039 -30.00812 -29.66851 -27.89421 -26.57656 -25.15225 -22.43014 -21.76361 -20.81864 -20.07583 -19.62232 -17.28141 -16.11566 -15.88277 -15.43607 -14.81766 -14.56882 -14.36879 -14.14897 -13.80309 -13.50193 -13.01571 -12.66243 -12.48483 -12.34532 -12.04095 -11.58881 -11.44596 -11.17849 -11.12971 -11.03715 -10.76220 -10.66807 -10.47095 -10.43965 -10.21600 -9.68883 -9.28632 -9.16294 -8.85289 -8.66442 -7.34130 -6.67637 -6.15867 -4.27115 2.88590 3.11887 3.17060 3.26278 3.40958 3.99055 4.08520 4.40471 4.66412 4.75749 4.85206 5.07431 5.17050 5.21772 5.45176 5.47512 5.51210 5.64339 5.87817 5.87937 5.96588 6.02966 6.10154 6.26026 6.37719 6.40940 6.51489 6.63701 6.94011 7.08305 7.12297 7.15572 7.23072 7.38744 7.45006 7.84009 7.96112 8.18653 8.29590 8.55868 8.69538 8.83390 9.04090 9.16615 10.28532 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.003907 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.121147 B = 7165.726333 C = 7468.165894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.199 4.199 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.227 3.773 14 N -0.758 5.758 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.136 4.136 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.094 3.906 21 H 0.082 0.918 22 N -0.846 5.846 23 C -0.117 4.117 24 C -0.291 4.291 25 H 0.278 0.722 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.386 0.614 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.339 0.661 37 H 0.338 0.662 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -15.045 -0.793 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.128 3.872 14 N -0.389 5.389 15 C 0.058 3.942 16 H 0.092 0.908 17 C -0.175 4.175 18 C -0.152 4.152 19 C -0.191 4.191 20 C -0.018 4.018 21 H 0.100 0.900 22 N -0.373 5.373 23 C -0.156 4.156 24 C -0.314 4.314 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.219 0.781 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.089 -14.593 -0.138 14.594 hybrid contribution -0.161 0.368 -1.124 1.194 sum -0.250 -14.225 -1.263 14.284 Atomic orbital electron populations 1.69864 1.07542 1.28895 1.35503 1.25882 0.94661 1.01127 0.92284 0.86376 0.80828 0.80998 0.78923 1.19707 1.20115 1.18488 1.19543 0.98014 0.91305 1.40670 0.90693 1.17329 0.90281 0.91280 0.87231 1.21156 1.00634 0.96603 1.03575 1.20441 0.97702 0.92964 0.98370 1.19882 1.03303 0.96455 1.12839 1.17460 0.92918 0.84012 0.92795 1.44475 1.34456 1.02735 1.57262 1.20561 0.91444 0.83984 0.98247 0.90751 1.22089 0.98498 0.97218 0.99693 1.21438 0.97607 0.94467 1.01737 1.22417 0.97841 0.98545 1.00321 1.21414 0.90353 0.90794 0.99208 0.90006 1.58915 1.37456 1.07008 1.33946 1.21790 0.98715 0.93265 1.01782 1.20407 1.06758 0.91617 1.12656 0.91104 0.86879 0.89754 0.89574 0.78094 0.90979 0.92367 0.92158 0.91832 0.92200 0.92391 0.84869 0.84972 0.90785 0.92115 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.06 10.97 55.55 0.61 -20.45 16 2 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 3 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.47 -12.74 9.05 -37.74 -0.34 -13.08 16 8 H 0.07 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.14 3.91 5.57 -106.85 -0.60 3.31 16 10 C -0.20 -5.37 8.69 -38.83 -0.34 -5.71 16 11 C -0.08 -1.84 10.02 -39.69 -0.40 -2.24 16 12 C -0.30 -6.91 8.84 -39.08 -0.35 -7.25 16 13 C 0.23 5.13 6.63 -83.86 -0.56 4.58 16 14 N -0.76 -13.61 5.25 -52.22 -0.27 -13.89 16 15 C 0.16 2.43 2.14 -67.93 -0.15 2.28 16 16 H 0.07 1.20 6.48 -51.93 -0.34 0.86 16 17 C -0.14 -1.87 5.42 -26.73 -0.14 -2.02 16 18 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 19 C -0.15 -1.42 5.49 -26.73 -0.15 -1.56 16 20 C 0.09 0.96 3.25 -67.69 -0.22 0.74 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 N -0.85 -7.52 9.25 -4.65 -0.04 -7.56 16 23 C -0.12 -1.41 4.93 -26.71 -0.13 -1.55 16 24 C -0.29 -7.34 9.63 -38.67 -0.37 -7.71 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.11 3.14 6.17 -52.49 -0.32 2.82 16 27 H 0.08 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.09 1.78 6.05 -52.49 -0.32 1.46 16 29 H 0.39 6.43 8.61 -40.82 -0.35 6.08 16 30 H 0.07 1.18 7.66 -51.93 -0.40 0.78 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.34 2.44 9.04 -39.29 -0.36 2.08 16 37 H 0.34 2.68 8.98 -39.29 -0.35 2.32 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -28.41 317.56 -10.15 -38.56 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.21 Total: 14.19 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -3.98 Total: -29.69 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.29 Total: -41.90 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.41 -10.15 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.810 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds