Wall clock time and date at job start Mon Mar 30 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86803 * 119.99846 * 2 1 4 4 H 1.48493 * 109.47385 * 274.66304 * 3 2 1 5 5 H 1.48503 * 109.47034 * 34.66306 * 3 2 1 6 6 H 1.48503 * 109.47194 * 154.66082 * 3 2 1 7 7 C 1.39935 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99898 * 162.20334 * 7 2 1 9 9 C 1.41401 * 119.99599 * 342.20315 * 7 2 1 10 10 C 1.40789 * 120.20959 * 335.25035 * 9 7 2 11 11 C 1.37646 * 119.89320 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32681 * 359.72285 * 11 10 9 13 13 C 1.39291 * 120.42107 * 0.54890 * 12 11 10 14 14 N 1.39683 * 119.95112 * 179.72365 * 13 12 11 15 15 C 1.46503 * 120.00012 * 359.72592 * 14 13 12 16 16 H 1.09001 * 109.47221 * 325.00930 * 15 14 13 17 17 C 1.53005 * 109.46505 * 85.00145 * 15 14 13 18 18 C 1.53005 * 109.46619 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47045 * 299.99852 * 18 17 15 20 20 C 1.52996 * 109.47165 * 60.00519 * 19 18 17 21 21 H 1.08994 * 109.47347 * 59.99840 * 20 19 18 22 22 N 1.46897 * 109.47239 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47448 * 204.99820 * 15 14 13 24 24 C 1.38317 * 120.09627 * 359.45704 * 13 12 11 25 25 H 0.96999 * 120.00080 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05533 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.83886 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.79018 * 180.27652 * 12 11 10 29 29 H 0.96993 * 119.99999 * 179.73328 * 14 13 12 30 30 H 1.09001 * 109.46989 * 299.99659 * 17 15 14 31 31 H 1.08994 * 109.47316 * 60.00207 * 17 15 14 32 32 H 1.09007 * 109.46891 * 180.02562 * 18 17 15 33 33 H 1.08994 * 109.47341 * 59.99935 * 18 17 15 34 34 H 1.09003 * 109.47243 * 300.00264 * 19 18 17 35 35 H 1.09002 * 109.46764 * 180.02562 * 19 18 17 36 36 H 1.00899 * 110.99874 * 299.99666 * 22 20 19 37 37 H 1.00903 * 111.00320 * 63.94901 * 22 20 19 38 38 H 1.09007 * 109.46579 * 60.00557 * 23 15 14 39 39 H 1.08994 * 109.47295 * 300.00358 * 23 15 14 40 40 H 1.08000 * 120.16017 * 180.24830 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1034 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2118 -0.0005 8 1 3.0492 -1.2340 -0.2864 9 6 1.3518 -2.4072 0.3732 10 6 0.2238 -2.3629 1.2146 11 6 -0.4103 -3.5305 1.5739 12 6 0.0523 -4.7500 1.1071 13 6 1.1704 -4.8099 0.2786 14 7 1.6319 -6.0453 -0.1818 15 6 0.9436 -7.2773 0.2116 16 1 0.5735 -7.1767 1.2320 17 6 -0.2321 -7.5290 -0.7346 18 6 -0.9514 -8.8152 -0.3234 19 6 0.0244 -9.9914 -0.3981 20 6 1.2000 -9.7397 0.5481 21 1 0.8300 -9.6388 1.5684 22 7 2.1371 -10.8686 0.4759 23 6 1.9195 -8.4531 0.1364 24 6 1.8211 -3.6474 -0.0934 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1433 -1.4143 1.5775 27 1 -1.2753 -3.4955 2.2197 28 1 -0.4546 -5.6605 1.3909 29 1 2.4081 -6.0875 -0.7619 30 1 -0.9275 -6.6912 -0.6810 31 1 0.1378 -7.6294 -1.7550 32 1 -1.7887 -8.9948 -0.9978 33 1 -1.3213 -8.7144 0.6969 34 1 0.3943 -10.0923 -1.4185 35 1 -0.4882 -10.9078 -0.1055 36 1 1.6859 -11.7307 0.7428 37 1 2.5434 -10.9431 -0.4447 38 1 2.7571 -8.2737 0.8106 39 1 2.2894 -8.5536 -0.8839 40 1 2.6857 -3.6923 -0.7390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313413588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:11 Heat of formation + Delta-G solvation = -19.301776 kcal Electronic energy + Delta-G solvation = -19129.310566 eV Core-core repulsion = 16327.256091 eV Total energy + Delta-G solvation = -2802.054475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43381 -39.08380 -36.48401 -34.99443 -33.74223 -31.69082 -31.27326 -28.89964 -28.11199 -27.11191 -23.62914 -22.90125 -22.55039 -21.61158 -20.82786 -19.13447 -17.41729 -17.23566 -16.79565 -16.42384 -16.20624 -15.55350 -15.30338 -14.96772 -14.65768 -14.51495 -14.26246 -13.96765 -13.71662 -13.43430 -13.23312 -13.00511 -12.74708 -12.55120 -12.33895 -12.09365 -11.98733 -11.80322 -11.70026 -11.52715 -11.32522 -11.17468 -11.02774 -10.41770 -9.54574 -9.33096 -8.60643 -7.92737 -6.32141 1.05322 1.34905 1.39195 1.52500 1.60122 2.23016 2.72758 2.80983 3.55114 3.75671 3.86694 3.95992 4.15635 4.21070 4.25572 4.43741 4.49119 4.52263 4.55107 4.69523 4.75237 4.95971 5.04418 5.10394 5.14893 5.16985 5.17091 5.26883 5.27084 5.36514 5.43104 5.49422 5.62011 5.96399 6.03279 6.20870 6.26447 6.32303 6.63770 6.64676 6.90586 7.02732 7.06462 7.26386 8.37867 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.003907 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.121147 B = 7165.726333 C = 7468.165894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.113 3.887 10 C -0.232 4.232 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.237 3.763 14 N -0.749 5.749 15 C 0.162 3.838 16 H 0.063 0.937 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.143 4.143 20 C 0.100 3.900 21 H 0.076 0.924 22 N -0.850 5.850 23 C -0.108 4.108 24 C -0.315 4.315 25 H 0.287 0.713 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.393 0.607 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.351 0.649 37 H 0.345 0.655 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -16.842 -1.002 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.253 4.253 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.136 3.864 14 N -0.380 5.380 15 C 0.056 3.944 16 H 0.081 0.919 17 C -0.170 4.170 18 C -0.149 4.149 19 C -0.183 4.183 20 C -0.012 4.012 21 H 0.094 0.906 22 N -0.380 5.380 23 C -0.146 4.146 24 C -0.339 4.339 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.227 0.773 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.023 -16.457 -0.360 16.461 hybrid contribution -0.209 0.758 -1.068 1.326 sum -0.232 -15.699 -1.427 15.766 Atomic orbital electron populations 1.69920 1.09043 1.30347 1.35684 1.26763 0.95472 1.04469 0.91158 0.85216 0.79181 0.76024 0.79370 1.18676 1.18923 1.18352 1.19806 0.98205 0.92693 1.42727 0.91035 1.17693 0.90996 0.92411 0.87850 1.21084 1.01913 0.96840 1.05449 1.20732 0.97950 0.92714 0.98086 1.20162 1.03242 0.96892 1.12228 1.17515 0.92173 0.85100 0.91657 1.44586 1.34550 1.02353 1.56481 1.20757 0.92387 0.83432 0.97783 0.91859 1.21996 0.97521 0.97910 0.99523 1.21414 0.98038 0.93442 1.01963 1.22352 0.97026 0.98468 1.00405 1.21274 0.90614 0.90208 0.99079 0.90584 1.58848 1.37283 1.07217 1.34622 1.21680 0.97710 0.93101 1.02133 1.20534 1.07547 0.92146 1.13655 0.90279 0.88665 0.87496 0.87063 0.77261 0.93794 0.92226 0.91106 0.91736 0.91664 0.90416 0.83481 0.84164 0.91933 0.91217 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.03 10.97 21.82 0.24 -44.79 16 2 C 0.04 1.91 5.14 85.25 0.44 2.35 16 3 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.11 6.50 5.57 -21.31 -0.12 6.39 16 10 C -0.23 -12.99 8.69 22.75 0.20 -12.79 16 11 C -0.08 -3.74 10.02 22.20 0.22 -3.51 16 12 C -0.30 -13.74 8.84 22.59 0.20 -13.54 16 13 C 0.24 10.77 6.63 38.16 0.25 11.02 16 14 N -0.75 -26.38 5.25 -319.11 -1.67 -28.06 16 15 C 0.16 4.54 2.14 44.99 0.10 4.64 16 16 H 0.06 1.94 6.48 -2.39 -0.02 1.93 16 17 C -0.13 -3.39 5.42 30.60 0.17 -3.22 16 18 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 19 C -0.14 -2.17 5.49 30.59 0.17 -2.00 16 20 C 0.10 1.76 3.25 44.93 0.15 1.91 16 21 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 22 N -0.85 -12.56 9.25 -168.62 -1.56 -14.12 16 23 C -0.11 -2.38 4.93 30.61 0.15 -2.23 16 24 C -0.31 -16.37 9.63 22.86 0.22 -16.15 16 25 H 0.29 14.08 8.30 -92.71 -0.77 13.32 16 26 H 0.10 5.56 6.17 -2.91 -0.02 5.54 16 27 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.11 4.44 6.05 -2.91 -0.02 4.42 16 29 H 0.39 12.79 8.61 -92.71 -0.80 11.99 16 30 H 0.04 1.39 7.66 -2.39 -0.02 1.37 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.35 3.89 9.04 -89.69 -0.81 3.08 16 37 H 0.35 4.38 8.98 -89.69 -0.81 3.58 16 38 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -63.13 317.56 0.21 -62.92 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -1.36 Total: 39.92 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 2.53 Total: -57.59 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -3.00 Total: -86.97 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -63.13 0.21 -62.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.617 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds