Wall clock time and date at job start Mon Mar 30 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00372 * 2 1 4 4 H 1.48503 * 109.47292 * 267.41399 * 3 2 1 5 5 H 1.48497 * 109.47364 * 147.40964 * 3 2 1 6 6 H 1.48499 * 109.46914 * 27.40853 * 3 2 1 7 7 C 1.39930 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00224 * 162.68339 * 7 2 1 9 9 C 1.41411 * 119.99733 * 342.68501 * 7 2 1 10 10 C 1.40782 * 120.20977 * 335.06677 * 9 7 2 11 11 C 1.37645 * 119.89861 * 179.80926 * 10 9 7 12 12 C 1.38516 * 120.32081 * 0.44925 * 11 10 9 13 13 C 1.39299 * 120.42741 * 359.77962 * 12 11 10 14 14 N 1.39687 * 119.95462 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99796 * 0.02562 * 14 13 12 16 16 H 1.08999 * 109.47377 * 35.00427 * 15 14 13 17 17 C 1.53004 * 109.47211 * 275.00226 * 15 14 13 18 18 C 1.52994 * 109.46811 * 300.00014 * 17 15 14 19 19 C 1.52995 * 109.47399 * 299.99953 * 18 17 15 20 20 C 1.53004 * 109.47101 * 60.00225 * 19 18 17 21 21 H 1.08997 * 109.46947 * 60.00344 * 20 19 18 22 22 N 1.46897 * 109.46866 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.46659 * 299.99804 * 20 19 18 24 24 C 1.38311 * 120.09528 * 0.02562 * 13 12 11 25 25 H 0.97005 * 120.00292 * 359.97438 * 1 2 3 26 26 H 1.08009 * 120.04880 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.83936 * 180.22795 * 11 10 9 28 28 H 1.08008 * 119.79053 * 179.76330 * 12 11 10 29 29 H 0.96998 * 120.00105 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.46947 * 60.00514 * 17 15 14 31 31 H 1.08997 * 109.47027 * 180.02562 * 17 15 14 32 32 H 1.08997 * 109.47536 * 60.00152 * 18 17 15 33 33 H 1.09004 * 109.47215 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.47487 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47349 * 300.00215 * 19 18 17 36 36 H 1.00897 * 111.00440 * 299.99464 * 22 20 19 37 37 H 1.00896 * 111.00239 * 63.95351 * 22 20 19 38 38 H 1.08997 * 109.47392 * 299.99765 * 23 20 19 39 39 H 1.09002 * 109.46604 * 180.02562 * 23 20 19 40 40 H 1.07995 * 120.16662 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5446 2.0148 -1.3987 5 1 3.5114 1.4566 0.7541 6 1 1.4135 2.6678 0.6445 7 6 2.0079 -1.2118 -0.0005 8 1 3.0512 -1.2329 -0.2789 9 6 1.3489 -2.4089 0.3634 10 6 0.2172 -2.3683 1.1998 11 6 -0.4217 -3.5371 1.5469 12 6 0.0489 -4.7551 1.0847 13 6 1.1704 -4.8113 0.2603 14 7 1.6367 -6.0450 -0.1998 15 6 0.9462 -7.2786 0.1844 16 1 -0.1251 -7.0893 0.2525 17 6 1.4675 -7.7533 1.5423 18 6 2.9711 -8.0191 1.4467 19 6 3.2324 -9.0986 0.3945 20 6 2.7111 -8.6239 -0.9635 21 1 3.2249 -7.7061 -1.2493 22 7 2.9613 -9.6607 -1.9736 23 6 1.2074 -8.3582 -0.8678 24 6 1.8234 -3.6473 -0.1026 25 1 -0.4851 0.8401 0.0004 26 1 -0.1507 -1.4213 1.5664 27 1 -1.2919 -3.5046 2.1856 28 1 -0.4568 -5.6673 1.3654 29 1 2.4178 -6.0850 -0.7735 30 1 1.2813 -6.9842 2.2919 31 1 0.9540 -8.6713 1.8279 32 1 3.4850 -7.1013 1.1609 33 1 3.3425 -8.3577 2.4140 34 1 4.3036 -9.2883 0.3266 35 1 2.7186 -10.0164 0.6802 36 1 3.9480 -9.8548 -2.0558 37 1 2.4436 -10.5012 -1.7651 38 1 0.6936 -9.2761 -0.5821 39 1 0.8359 -8.0205 -1.8353 40 1 2.6927 -3.6895 -0.7420 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313413589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:14 Heat of formation + Delta-G solvation = 1.810143 kcal Electronic energy + Delta-G solvation = -19393.513598 eV Core-core repulsion = 16592.374604 eV Total energy + Delta-G solvation = -2801.138994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.43016 -37.32510 -34.77229 -33.35441 -32.31544 -30.12149 -29.65586 -27.88195 -26.70001 -25.13603 -22.55160 -21.76853 -20.66375 -20.57149 -18.89848 -17.19465 -16.22561 -15.97755 -15.32857 -14.70330 -14.60393 -14.39444 -14.23569 -13.78060 -13.25270 -13.00699 -12.71298 -12.36406 -12.09511 -12.00240 -11.81961 -11.55945 -11.29150 -11.11888 -10.98183 -10.72587 -10.56187 -10.50267 -10.36470 -10.05864 -9.68946 -9.25368 -9.15695 -8.80395 -8.64611 -7.33012 -6.66491 -6.13815 -4.26521 2.89740 3.12020 3.16560 3.27234 3.42192 4.00198 4.25445 4.38922 4.71742 4.74979 4.78786 5.07696 5.23886 5.30452 5.45852 5.54600 5.62515 5.65264 5.87830 5.90229 5.99758 6.09194 6.21255 6.29723 6.37398 6.44218 6.49271 6.62509 7.00019 7.09109 7.13775 7.16310 7.27920 7.39763 7.46158 7.85171 7.96912 8.19458 8.30796 8.57050 8.70592 8.84431 9.04955 9.17637 10.29578 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033594 B = 0.004396 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.283122 B = 6367.503241 C = 6705.445962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.262 1.262 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.142 3.858 10 C -0.200 4.200 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.227 3.773 14 N -0.753 5.753 15 C 0.163 3.837 16 H 0.076 0.924 17 C -0.135 4.135 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.090 3.910 21 H 0.081 0.919 22 N -0.846 5.846 23 C -0.117 4.117 24 C -0.291 4.291 25 H 0.278 0.722 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.386 0.614 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.339 0.661 37 H 0.336 0.664 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -14.209 0.765 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.186 1.186 6 H -0.202 1.202 7 C -0.495 4.495 8 H 0.092 0.908 9 C 0.139 3.861 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.129 3.871 14 N -0.387 5.387 15 C 0.055 3.945 16 H 0.094 0.906 17 C -0.174 4.174 18 C -0.149 4.149 19 C -0.189 4.189 20 C -0.021 4.021 21 H 0.099 0.901 22 N -0.373 5.373 23 C -0.156 4.156 24 C -0.314 4.314 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.220 0.780 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.918 -13.638 0.291 13.950 hybrid contribution 1.010 0.174 0.596 1.186 sum 3.928 -13.464 0.887 14.053 Atomic orbital electron populations 1.69858 1.07525 1.28907 1.35563 1.25874 0.94662 1.01102 0.92301 0.86396 0.80631 0.80890 0.79201 1.19569 1.18580 1.20209 1.19531 0.97799 0.91258 1.40946 0.90753 1.17328 0.90328 0.91284 0.87151 1.21156 1.00578 0.96593 1.03683 1.20435 0.97618 0.92992 0.98433 1.19875 1.03028 0.96442 1.13154 1.17464 0.92781 0.84102 0.92776 1.44541 1.33925 1.02561 1.57626 1.20592 0.97138 0.84454 0.92267 0.90585 1.22032 0.95659 1.00715 0.99009 1.21368 0.97073 0.98713 0.97792 1.22394 1.00332 0.99127 0.97095 1.21448 0.96676 0.95292 0.88708 0.90090 1.58933 1.13765 1.13679 1.50946 1.21805 0.95055 0.98663 1.00032 1.20391 1.06531 0.91651 1.12877 0.91094 0.86898 0.89809 0.89611 0.78019 0.91041 0.92454 0.91258 0.92696 0.92563 0.92431 0.84914 0.85141 0.91543 0.90750 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.10 10.95 55.55 0.61 -20.49 16 2 C 0.08 2.02 5.15 -17.35 -0.09 1.93 16 3 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -12.72 9.05 -37.74 -0.34 -13.06 16 8 H 0.07 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.14 3.90 5.57 -106.85 -0.60 3.31 16 10 C -0.20 -5.37 8.69 -38.84 -0.34 -5.71 16 11 C -0.08 -1.84 10.02 -39.70 -0.40 -2.23 16 12 C -0.30 -6.85 8.85 -39.08 -0.35 -7.19 16 13 C 0.23 5.08 6.63 -83.86 -0.56 4.52 16 14 N -0.75 -13.21 4.40 -52.22 -0.23 -13.44 16 15 C 0.16 2.36 2.47 -67.93 -0.17 2.19 16 16 H 0.08 1.20 6.47 -51.93 -0.34 0.87 16 17 C -0.13 -1.80 5.54 -26.73 -0.15 -1.95 16 18 C -0.11 -1.36 5.76 -26.74 -0.15 -1.51 16 19 C -0.15 -1.52 5.49 -26.73 -0.15 -1.67 16 20 C 0.09 0.99 3.08 -67.71 -0.21 0.78 16 21 H 0.08 1.01 6.51 -51.93 -0.34 0.68 16 22 N -0.85 -8.05 9.25 -4.67 -0.04 -8.09 16 23 C -0.12 -1.41 5.15 -26.73 -0.14 -1.55 16 24 C -0.29 -7.29 9.63 -38.67 -0.37 -7.66 16 25 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 26 H 0.11 3.14 6.17 -52.48 -0.32 2.81 16 27 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.09 1.75 6.07 -52.48 -0.32 1.43 16 29 H 0.39 6.41 6.87 -40.82 -0.28 6.13 16 30 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.97 7.60 -51.93 -0.39 0.58 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.34 2.74 9.04 -39.29 -0.36 2.39 16 37 H 0.34 2.74 8.98 -39.29 -0.35 2.38 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -28.12 313.16 -10.00 -38.13 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -6.03 Total: 14.91 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -4.00 Total: -29.80 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.34 Total: -42.02 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.12 -10.00 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.937 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds