Wall clock time and date at job start Mon Mar 30 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00372 * 2 1 4 4 H 1.48503 * 109.47292 * 267.41399 * 3 2 1 5 5 H 1.48497 * 109.47364 * 147.40964 * 3 2 1 6 6 H 1.48499 * 109.46914 * 27.40853 * 3 2 1 7 7 C 1.39930 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00224 * 162.68339 * 7 2 1 9 9 C 1.41411 * 119.99733 * 342.68501 * 7 2 1 10 10 C 1.40782 * 120.20977 * 335.06677 * 9 7 2 11 11 C 1.37645 * 119.89861 * 179.80926 * 10 9 7 12 12 C 1.38516 * 120.32081 * 0.44925 * 11 10 9 13 13 C 1.39299 * 120.42741 * 359.77962 * 12 11 10 14 14 N 1.39687 * 119.95462 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99796 * 0.02562 * 14 13 12 16 16 H 1.08999 * 109.47377 * 35.00427 * 15 14 13 17 17 C 1.53004 * 109.47211 * 275.00226 * 15 14 13 18 18 C 1.52994 * 109.46811 * 300.00014 * 17 15 14 19 19 C 1.52995 * 109.47399 * 299.99953 * 18 17 15 20 20 C 1.53004 * 109.47101 * 60.00225 * 19 18 17 21 21 H 1.08997 * 109.46947 * 60.00344 * 20 19 18 22 22 N 1.46897 * 109.46866 * 180.02562 * 20 19 18 23 23 C 1.52998 * 109.46659 * 299.99804 * 20 19 18 24 24 C 1.38311 * 120.09528 * 0.02562 * 13 12 11 25 25 H 0.97005 * 120.00292 * 359.97438 * 1 2 3 26 26 H 1.08009 * 120.04880 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.83936 * 180.22795 * 11 10 9 28 28 H 1.08008 * 119.79053 * 179.76330 * 12 11 10 29 29 H 0.96998 * 120.00105 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.46947 * 60.00514 * 17 15 14 31 31 H 1.08997 * 109.47027 * 180.02562 * 17 15 14 32 32 H 1.08997 * 109.47536 * 60.00152 * 18 17 15 33 33 H 1.09004 * 109.47215 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.47487 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47349 * 300.00215 * 19 18 17 36 36 H 1.00897 * 111.00440 * 299.99464 * 22 20 19 37 37 H 1.00896 * 111.00239 * 63.95351 * 22 20 19 38 38 H 1.08997 * 109.47392 * 299.99765 * 23 20 19 39 39 H 1.09002 * 109.46604 * 180.02562 * 23 20 19 40 40 H 1.07995 * 120.16662 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.5446 2.0148 -1.3987 5 1 3.5114 1.4566 0.7541 6 1 1.4135 2.6678 0.6445 7 6 2.0079 -1.2118 -0.0005 8 1 3.0512 -1.2329 -0.2789 9 6 1.3489 -2.4089 0.3634 10 6 0.2172 -2.3683 1.1998 11 6 -0.4217 -3.5371 1.5469 12 6 0.0489 -4.7551 1.0847 13 6 1.1704 -4.8113 0.2603 14 7 1.6367 -6.0450 -0.1998 15 6 0.9462 -7.2786 0.1844 16 1 -0.1251 -7.0893 0.2525 17 6 1.4675 -7.7533 1.5423 18 6 2.9711 -8.0191 1.4467 19 6 3.2324 -9.0986 0.3945 20 6 2.7111 -8.6239 -0.9635 21 1 3.2249 -7.7061 -1.2493 22 7 2.9613 -9.6607 -1.9736 23 6 1.2074 -8.3582 -0.8678 24 6 1.8234 -3.6473 -0.1026 25 1 -0.4851 0.8401 0.0004 26 1 -0.1507 -1.4213 1.5664 27 1 -1.2919 -3.5046 2.1856 28 1 -0.4568 -5.6673 1.3654 29 1 2.4178 -6.0850 -0.7735 30 1 1.2813 -6.9842 2.2919 31 1 0.9540 -8.6713 1.8279 32 1 3.4850 -7.1013 1.1609 33 1 3.3425 -8.3577 2.4140 34 1 4.3036 -9.2883 0.3266 35 1 2.7186 -10.0164 0.6802 36 1 3.9480 -9.8548 -2.0558 37 1 2.4436 -10.5012 -1.7651 38 1 0.6936 -9.2761 -0.5821 39 1 0.8359 -8.0205 -1.8353 40 1 2.6927 -3.6895 -0.7420 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313413589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:14 Heat of formation + Delta-G solvation = -15.245277 kcal Electronic energy + Delta-G solvation = -19394.253177 eV Core-core repulsion = 16592.374604 eV Total energy + Delta-G solvation = -2801.878572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63219 -39.02063 -36.27099 -34.92425 -33.57602 -31.70571 -31.30976 -28.83235 -28.34796 -27.08318 -23.72468 -22.77797 -22.50148 -22.16382 -20.22009 -18.96241 -17.49706 -17.29664 -16.89971 -16.29972 -16.10087 -15.68309 -15.39639 -14.80515 -14.72197 -14.48364 -14.23721 -13.92655 -13.49798 -13.33566 -13.13738 -13.01013 -12.86722 -12.64606 -12.52389 -12.12412 -12.07246 -11.74236 -11.58742 -11.51079 -11.25493 -11.09931 -10.95579 -10.39334 -9.54035 -9.31227 -8.59431 -7.88540 -6.31335 1.06819 1.36456 1.39352 1.51766 1.61197 2.23213 2.81431 2.83727 3.53710 3.77299 3.82704 3.89522 4.15057 4.25655 4.29188 4.47717 4.51345 4.59140 4.61806 4.72153 4.79774 4.87391 5.05343 5.12792 5.16338 5.17876 5.18641 5.25337 5.33672 5.41848 5.43660 5.48601 5.64194 5.98639 6.05008 6.22646 6.26623 6.34087 6.64221 6.66168 6.92927 7.04001 7.08593 7.28058 8.38859 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.033594 B = 0.004396 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.283122 B = 6367.503241 C = 6705.445962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.114 3.886 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.301 4.301 13 C 0.239 3.761 14 N -0.742 5.742 15 C 0.158 3.842 16 H 0.066 0.934 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.140 4.140 20 C 0.095 3.905 21 H 0.061 0.939 22 N -0.849 5.849 23 C -0.109 4.109 24 C -0.315 4.315 25 H 0.286 0.714 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.391 0.609 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.348 0.652 37 H 0.348 0.652 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -16.217 0.813 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.254 4.254 11 C -0.095 4.095 12 C -0.324 4.324 13 C 0.137 3.863 14 N -0.374 5.374 15 C 0.052 3.948 16 H 0.084 0.916 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.179 4.179 20 C -0.017 4.017 21 H 0.079 0.921 22 N -0.379 5.379 23 C -0.147 4.147 24 C -0.339 4.339 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.226 0.774 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.263 -15.712 0.327 16.051 hybrid contribution 0.871 0.606 0.567 1.203 sum 4.134 -15.106 0.894 15.687 Atomic orbital electron populations 1.69918 1.09021 1.30310 1.35850 1.26746 0.95468 1.04426 0.91183 0.85245 0.79068 0.75996 0.79551 1.18634 1.18407 1.18937 1.19792 0.97966 0.92672 1.43052 0.91147 1.17688 0.91057 0.92402 0.87784 1.21077 1.01863 0.96849 1.05610 1.20729 0.97879 0.92762 0.98129 1.20165 1.02919 0.96910 1.12435 1.17513 0.91995 0.85168 0.91580 1.44630 1.33885 1.02166 1.56714 1.20827 0.96236 0.83702 0.94076 0.91555 1.21968 0.96758 1.01051 0.97119 1.21345 0.95923 0.98485 0.99131 1.22313 1.01244 0.98818 0.95544 1.21294 0.95592 0.95171 0.89656 0.92085 1.58858 1.14788 1.13956 1.50313 1.21717 0.96166 0.98503 0.98302 1.20503 1.07257 0.92256 1.13898 0.90319 0.88753 0.87573 0.86885 0.77431 0.93559 0.89742 0.93731 0.91664 0.91540 0.90623 0.83840 0.83900 0.89041 0.92121 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.28 10.95 21.82 0.24 -45.04 16 2 C 0.04 1.93 5.15 85.25 0.44 2.37 16 3 Si 0.98 39.87 29.59 68.60 2.03 41.90 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.51 -28.84 9.05 23.46 0.21 -28.63 16 8 H 0.07 3.90 7.90 -2.91 -0.02 3.87 16 9 C 0.11 6.52 5.57 -21.31 -0.12 6.40 16 10 C -0.23 -13.04 8.69 22.75 0.20 -12.85 16 11 C -0.08 -3.73 10.02 22.20 0.22 -3.50 16 12 C -0.30 -13.52 8.85 22.59 0.20 -13.32 16 13 C 0.24 10.75 6.63 38.16 0.25 11.00 16 14 N -0.74 -25.62 4.40 -319.12 -1.40 -27.02 16 15 C 0.16 4.27 2.47 44.99 0.11 4.38 16 16 H 0.07 1.96 6.47 -2.39 -0.02 1.94 16 17 C -0.13 -3.16 5.54 30.59 0.17 -2.99 16 18 C -0.11 -2.45 5.76 30.59 0.18 -2.27 16 19 C -0.14 -2.38 5.49 30.59 0.17 -2.21 16 20 C 0.09 1.84 3.08 44.92 0.14 1.98 16 21 H 0.06 1.44 6.51 -2.39 -0.02 1.43 16 22 N -0.85 -13.70 9.25 -168.68 -1.56 -15.26 16 23 C -0.11 -2.32 5.15 30.59 0.16 -2.17 16 24 C -0.31 -16.36 9.63 22.86 0.22 -16.14 16 25 H 0.29 14.16 8.30 -92.70 -0.77 13.39 16 26 H 0.09 5.52 6.17 -2.91 -0.02 5.50 16 27 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.11 4.41 6.07 -2.91 -0.02 4.39 16 29 H 0.39 12.90 6.87 -92.71 -0.64 12.26 16 30 H 0.05 1.37 7.69 -2.39 -0.02 1.35 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.21 7.60 -2.39 -0.02 1.19 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.35 4.66 9.04 -89.70 -0.81 3.84 16 37 H 0.35 4.39 8.98 -89.70 -0.81 3.59 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.09 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.05 313.16 0.66 -62.40 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -1.19 Total: 40.99 kcal Atomic # 6 Polarization: -60.51 SS G_CDS: 2.55 Total: -57.97 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.73 Total: -87.32 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -63.05 0.66 -62.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.151 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds