Wall clock time and date at job start Mon Mar 30 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47033 * 274.66153 * 3 2 1 5 5 H 1.48502 * 109.47037 * 34.65728 * 3 2 1 6 6 H 1.48496 * 109.47191 * 154.65936 * 3 2 1 7 7 C 1.39931 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00101 * 162.20748 * 7 2 1 9 9 C 1.41404 * 120.00298 * 342.22012 * 7 2 1 10 10 C 1.40792 * 120.20357 * 335.24914 * 9 7 2 11 11 C 1.37648 * 119.89325 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32346 * 359.72558 * 11 10 9 13 13 C 1.39294 * 120.42307 * 0.55100 * 12 11 10 14 14 N 1.39685 * 119.94919 * 179.72349 * 13 12 11 15 15 C 1.46503 * 119.99831 * 359.72943 * 14 13 12 16 16 C 1.53000 * 109.46614 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.46758 * 65.01876 * 16 15 14 18 18 C 1.53046 * 109.46106 * 184.99732 * 16 15 14 19 19 C 1.53117 * 109.27947 * 179.19415 * 18 16 15 20 20 C 1.53128 * 109.15884 * 302.34526 * 19 18 16 21 21 C 1.53040 * 109.27578 * 57.65775 * 20 19 18 22 22 N 1.46843 * 109.52120 * 300.81685 * 21 20 19 23 23 C 1.38319 * 120.09524 * 359.45169 * 13 12 11 24 24 H 0.96998 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.05356 * 359.95320 * 10 9 7 26 26 H 1.07999 * 119.83796 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.78609 * 180.27743 * 12 11 10 28 28 H 0.97002 * 119.99766 * 180.02562 * 14 13 12 29 29 H 1.09004 * 109.46980 * 299.99706 * 15 14 13 30 30 H 1.08994 * 109.47370 * 60.00255 * 15 14 13 31 31 H 1.08994 * 109.50267 * 299.14177 * 18 16 15 32 32 H 1.09005 * 109.50089 * 59.25057 * 18 16 15 33 33 H 1.08998 * 109.52293 * 62.24669 * 19 18 16 34 34 H 1.08995 * 109.52308 * 182.38236 * 19 18 16 35 35 H 1.08999 * 109.49927 * 177.59302 * 20 19 18 36 36 H 1.09003 * 109.50368 * 297.67367 * 20 19 18 37 37 H 1.08996 * 109.46200 * 60.83575 * 21 20 19 38 38 H 1.09003 * 109.45414 * 180.80724 * 21 20 19 39 39 H 1.00900 * 111.00109 * 297.64519 * 22 21 20 40 40 H 1.07999 * 120.15558 * 180.25370 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6222 0.7962 6 1 3.5855 1.4137 0.5992 7 6 2.0079 -1.2118 0.0005 8 1 3.0492 -1.2343 -0.2853 9 6 1.3516 -2.4071 0.3750 10 6 0.2235 -2.3620 1.2161 11 6 -0.4108 -3.5294 1.5762 12 6 0.0520 -4.7492 1.1104 13 6 1.1703 -4.8097 0.2822 14 7 1.6319 -6.0455 -0.1770 15 6 0.9434 -7.2771 0.2172 16 6 1.6459 -8.4793 -0.4169 17 1 2.6526 -8.5687 -0.0086 18 6 0.8555 -9.7530 -0.1081 19 6 1.5511 -10.9505 -0.7613 20 6 1.6619 -10.7064 -2.2689 21 6 2.4289 -9.4052 -2.5150 22 7 1.7230 -8.2901 -1.8711 23 6 1.8211 -3.6475 -0.0905 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1435 -1.4132 1.5785 26 1 -1.2759 -3.4939 2.2218 27 1 -0.4550 -5.6594 1.3948 28 1 2.4109 -6.0885 -0.7535 29 1 0.9659 -7.3745 1.3026 30 1 -0.0915 -7.2397 -0.1229 31 1 0.8118 -9.9015 0.9708 32 1 -0.1556 -9.6589 -0.5042 33 1 2.5483 -11.0684 -0.3372 34 1 0.9687 -11.8537 -0.5795 35 1 2.1944 -11.5362 -2.7337 36 1 0.6634 -10.6280 -2.6992 37 1 3.4318 -9.4902 -2.0967 38 1 2.4970 -9.2211 -3.5872 39 1 0.8040 -8.1660 -2.2688 40 1 2.6858 -3.6930 -0.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313490229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:49 Heat of formation + Delta-G solvation = 4.187649 kcal Electronic energy + Delta-G solvation = -18861.063990 eV Core-core repulsion = 16060.028093 eV Total energy + Delta-G solvation = -2801.035897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23758 -37.55794 -34.95177 -33.18383 -31.81116 -31.31861 -29.64964 -27.79671 -25.23958 -24.98465 -23.38250 -21.75557 -20.72400 -20.33283 -19.85777 -17.18550 -15.99884 -15.42498 -15.38063 -15.01088 -14.74766 -14.49975 -14.17654 -14.09673 -13.23621 -13.03965 -12.79997 -12.41141 -12.17614 -12.11074 -11.94912 -11.54199 -11.39556 -11.28669 -11.02046 -10.95331 -10.80197 -10.56467 -10.46729 -10.31769 -9.67442 -9.23265 -9.10645 -8.60263 -8.39570 -7.28788 -6.63141 -6.05430 -4.22348 2.92411 3.14551 3.19991 3.31278 3.47071 4.02403 4.06824 4.34252 4.58672 4.70812 4.76691 4.80765 5.02478 5.14769 5.21579 5.31850 5.51411 5.60659 5.70473 5.74624 5.79576 5.87187 5.90387 5.99124 6.04633 6.21543 6.41836 6.64247 6.96045 7.14557 7.18239 7.20308 7.33398 7.44468 7.54044 7.91147 8.02566 8.23899 8.35296 8.62658 8.83980 8.90340 9.09391 9.23198 10.33114 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.003671 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.815595 B = 7625.412462 C = 8086.221722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.201 4.201 11 C -0.076 4.076 12 C -0.305 4.305 13 C 0.227 3.773 14 N -0.752 5.752 15 C 0.145 3.855 16 C 0.078 3.922 17 H 0.083 0.917 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.159 4.159 21 C 0.058 3.942 22 N -0.676 5.676 23 C -0.289 4.289 24 H 0.278 0.722 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.395 0.605 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.343 0.657 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -16.373 -2.134 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.328 4.328 13 C 0.128 3.872 14 N -0.386 5.386 15 C 0.019 3.981 16 C -0.033 4.033 17 H 0.101 0.899 18 C -0.190 4.190 19 C -0.156 4.156 20 C -0.198 4.198 21 C -0.072 4.072 22 N -0.305 5.305 23 C -0.313 4.313 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.230 0.770 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.161 0.839 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.033 -15.911 -2.033 16.169 hybrid contribution -0.202 -0.076 -0.199 0.294 sum 1.831 -15.987 -2.232 16.246 Atomic orbital electron populations 1.69868 1.07532 1.28816 1.35685 1.25876 0.94653 1.01091 0.92328 0.86381 0.80815 0.81049 0.78895 1.19724 1.20169 1.18516 1.19541 0.98006 0.91314 1.40681 0.90706 1.17331 0.90259 0.91305 0.87209 1.21143 1.00724 0.96544 1.03709 1.20425 0.97677 0.92984 0.98400 1.19842 1.03359 0.96395 1.13190 1.17498 0.92796 0.84273 0.92654 1.44279 1.34736 1.02134 1.57410 1.21029 0.95467 0.83899 0.97682 1.21828 0.99709 0.93161 0.88576 0.89909 1.22217 0.99706 0.95657 1.01470 1.21536 1.00834 0.97815 0.95375 1.22284 1.01234 0.99739 0.96571 1.22014 0.97787 0.87966 0.99465 1.60558 1.24740 1.41906 1.03277 1.20397 1.06802 0.91548 1.12596 0.91162 0.86920 0.89841 0.89923 0.77044 0.93061 0.93633 0.91170 0.91729 0.91920 0.92108 0.91706 0.92067 0.91061 0.90764 0.83868 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.33 10.97 55.55 0.61 -20.72 16 2 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 3 Si 0.90 19.29 29.59 -169.99 -5.03 14.26 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.47 -12.91 9.05 -37.74 -0.34 -13.25 16 8 H 0.07 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.14 3.97 5.57 -106.85 -0.60 3.38 16 10 C -0.20 -5.49 8.69 -38.83 -0.34 -5.83 16 11 C -0.08 -1.88 10.02 -39.69 -0.40 -2.28 16 12 C -0.30 -7.16 9.32 -39.08 -0.36 -7.53 16 13 C 0.23 5.29 6.64 -83.86 -0.56 4.74 16 14 N -0.75 -13.99 5.56 -58.68 -0.33 -14.31 16 15 C 0.15 2.17 4.55 -4.04 -0.02 2.15 16 16 C 0.08 0.90 2.58 -67.72 -0.17 0.72 16 17 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 18 C -0.15 -1.44 5.36 -26.65 -0.14 -1.58 16 19 C -0.12 -0.98 6.00 -26.60 -0.16 -1.14 16 20 C -0.16 -1.28 6.08 -26.64 -0.16 -1.44 16 21 C 0.06 0.53 6.55 -3.83 -0.03 0.51 16 22 N -0.68 -7.74 5.94 -106.76 -0.63 -8.37 16 23 C -0.29 -7.48 9.63 -38.68 -0.37 -7.85 16 24 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 25 H 0.11 3.17 6.17 -52.49 -0.32 2.85 16 26 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.08 1.75 6.70 -52.49 -0.35 1.40 16 28 H 0.40 7.10 8.15 -40.82 -0.33 6.77 16 29 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 30 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.34 3.96 8.79 -39.29 -0.35 3.61 16 40 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -28.64 319.87 -10.68 -39.32 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.38 Total: 12.47 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.74 Total: -27.47 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.35 Total: -43.41 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.64 -10.68 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313490229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.508 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds