Wall clock time and date at job start Mon Mar 30 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47033 * 274.66153 * 3 2 1 5 5 H 1.48502 * 109.47037 * 34.65728 * 3 2 1 6 6 H 1.48496 * 109.47191 * 154.65936 * 3 2 1 7 7 C 1.39931 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00101 * 162.20748 * 7 2 1 9 9 C 1.41404 * 120.00298 * 342.22012 * 7 2 1 10 10 C 1.40792 * 120.20357 * 335.24914 * 9 7 2 11 11 C 1.37648 * 119.89325 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32346 * 359.72558 * 11 10 9 13 13 C 1.39294 * 120.42307 * 0.55100 * 12 11 10 14 14 N 1.39685 * 119.94919 * 179.72349 * 13 12 11 15 15 C 1.46503 * 119.99831 * 359.72943 * 14 13 12 16 16 C 1.53000 * 109.46614 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.46758 * 65.01876 * 16 15 14 18 18 C 1.53046 * 109.46106 * 184.99732 * 16 15 14 19 19 C 1.53117 * 109.27947 * 179.19415 * 18 16 15 20 20 C 1.53128 * 109.15884 * 302.34526 * 19 18 16 21 21 C 1.53040 * 109.27578 * 57.65775 * 20 19 18 22 22 N 1.46843 * 109.52120 * 300.81685 * 21 20 19 23 23 C 1.38319 * 120.09524 * 359.45169 * 13 12 11 24 24 H 0.96998 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.05356 * 359.95320 * 10 9 7 26 26 H 1.07999 * 119.83796 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.78609 * 180.27743 * 12 11 10 28 28 H 0.97002 * 119.99766 * 180.02562 * 14 13 12 29 29 H 1.09004 * 109.46980 * 299.99706 * 15 14 13 30 30 H 1.08994 * 109.47370 * 60.00255 * 15 14 13 31 31 H 1.08994 * 109.50267 * 299.14177 * 18 16 15 32 32 H 1.09005 * 109.50089 * 59.25057 * 18 16 15 33 33 H 1.08998 * 109.52293 * 62.24669 * 19 18 16 34 34 H 1.08995 * 109.52308 * 182.38236 * 19 18 16 35 35 H 1.08999 * 109.49927 * 177.59302 * 20 19 18 36 36 H 1.09003 * 109.50368 * 297.67367 * 20 19 18 37 37 H 1.08996 * 109.46200 * 60.83575 * 21 20 19 38 38 H 1.09003 * 109.45414 * 180.80724 * 21 20 19 39 39 H 1.00900 * 111.00109 * 297.64519 * 22 21 20 40 40 H 1.07999 * 120.15558 * 180.25370 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6222 0.7962 6 1 3.5855 1.4137 0.5992 7 6 2.0079 -1.2118 0.0005 8 1 3.0492 -1.2343 -0.2853 9 6 1.3516 -2.4071 0.3750 10 6 0.2235 -2.3620 1.2161 11 6 -0.4108 -3.5294 1.5762 12 6 0.0520 -4.7492 1.1104 13 6 1.1703 -4.8097 0.2822 14 7 1.6319 -6.0455 -0.1770 15 6 0.9434 -7.2771 0.2172 16 6 1.6459 -8.4793 -0.4169 17 1 2.6526 -8.5687 -0.0086 18 6 0.8555 -9.7530 -0.1081 19 6 1.5511 -10.9505 -0.7613 20 6 1.6619 -10.7064 -2.2689 21 6 2.4289 -9.4052 -2.5150 22 7 1.7230 -8.2901 -1.8711 23 6 1.8211 -3.6475 -0.0905 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1435 -1.4132 1.5785 26 1 -1.2759 -3.4939 2.2218 27 1 -0.4550 -5.6594 1.3948 28 1 2.4109 -6.0885 -0.7535 29 1 0.9659 -7.3745 1.3026 30 1 -0.0915 -7.2397 -0.1229 31 1 0.8118 -9.9015 0.9708 32 1 -0.1556 -9.6589 -0.5042 33 1 2.5483 -11.0684 -0.3372 34 1 0.9687 -11.8537 -0.5795 35 1 2.1944 -11.5362 -2.7337 36 1 0.6634 -10.6280 -2.6992 37 1 3.4318 -9.4902 -2.0967 38 1 2.4970 -9.2211 -3.5872 39 1 0.8040 -8.1660 -2.2688 40 1 2.6858 -3.6930 -0.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313490229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:48 Heat of formation + Delta-G solvation = -12.916814 kcal Electronic energy + Delta-G solvation = -18861.805695 eV Core-core repulsion = 16060.028093 eV Total energy + Delta-G solvation = -2801.777603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21485 -39.30468 -36.57515 -34.93972 -32.67845 -32.44500 -31.63346 -29.36719 -27.11040 -26.38430 -24.19639 -23.05970 -22.30732 -21.60707 -21.27467 -19.08541 -17.33875 -17.16426 -16.41689 -16.32214 -16.16426 -15.78439 -15.54661 -15.00970 -14.62782 -14.46362 -14.36679 -13.90808 -13.67851 -13.38204 -13.10802 -12.96729 -12.77372 -12.65519 -12.46256 -12.15849 -12.10344 -12.03473 -11.62316 -11.55518 -11.33785 -11.17050 -11.02014 -10.40055 -9.30590 -9.23392 -8.58539 -7.84956 -6.30014 1.07597 1.37718 1.40597 1.53852 1.62247 2.24700 2.82984 2.83853 3.33067 3.77060 3.88517 3.91137 4.04216 4.17748 4.32468 4.36071 4.51241 4.52579 4.71854 4.73417 4.80153 4.88283 4.92072 5.05349 5.10723 5.16158 5.16845 5.18646 5.19265 5.28341 5.39446 5.45699 5.64807 5.98321 6.06480 6.13824 6.23670 6.34964 6.45660 6.67434 6.94804 7.05687 7.13895 7.33735 8.40067 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041117 B = 0.003671 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.815595 B = 7625.412462 C = 8086.221722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.075 4.075 12 C -0.306 4.306 13 C 0.235 3.765 14 N -0.741 5.741 15 C 0.142 3.858 16 C 0.089 3.911 17 H 0.080 0.920 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.153 4.153 21 C 0.058 3.942 22 N -0.691 5.691 23 C -0.315 4.315 24 H 0.286 0.714 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.399 0.601 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.342 0.658 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -17.836 -2.245 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.255 4.255 11 C -0.094 4.094 12 C -0.330 4.330 13 C 0.133 3.867 14 N -0.373 5.373 15 C 0.017 3.983 16 C -0.022 4.022 17 H 0.098 0.902 18 C -0.185 4.185 19 C -0.153 4.153 20 C -0.193 4.193 21 C -0.071 4.071 22 N -0.321 5.321 23 C -0.339 4.339 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.233 0.767 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.157 -17.436 -2.155 17.700 hybrid contribution -0.270 0.218 -0.186 0.394 sum 1.887 -17.217 -2.341 17.478 Atomic orbital electron populations 1.69922 1.09040 1.30310 1.35778 1.26764 0.95481 1.04467 0.91175 0.85211 0.79169 0.76009 0.79360 1.18687 1.18912 1.18359 1.19805 0.98186 0.92729 1.42752 0.91096 1.17692 0.90984 0.92391 0.87823 1.21078 1.01978 0.96837 1.05567 1.20725 0.97923 0.92700 0.98065 1.20142 1.03274 0.96970 1.12577 1.17580 0.92134 0.85341 0.91622 1.44363 1.34635 1.01874 1.56432 1.21246 0.95464 0.83397 0.98170 1.21665 0.99418 0.92519 0.88591 0.90179 1.22160 0.99408 0.94934 1.02017 1.21532 1.00960 0.97552 0.95291 1.22223 1.01137 0.99328 0.96566 1.22041 0.97588 0.88003 0.99500 1.60548 1.24867 1.43408 1.03248 1.20507 1.07557 0.92177 1.13652 0.90305 0.88666 0.87456 0.87108 0.76653 0.92759 0.93714 0.90613 0.91721 0.91751 0.90960 0.90396 0.92094 0.91207 0.90317 0.84014 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.40 10.97 21.82 0.24 -45.16 16 2 C 0.04 1.90 5.14 85.25 0.44 2.34 16 3 Si 0.98 40.02 29.59 68.60 2.03 42.05 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.51 -29.06 9.05 23.46 0.21 -28.85 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 9 C 0.11 6.61 5.57 -21.31 -0.12 6.50 16 10 C -0.23 -13.20 8.69 22.76 0.20 -13.00 16 11 C -0.08 -3.73 10.02 22.20 0.22 -3.51 16 12 C -0.31 -14.08 9.32 22.59 0.21 -13.87 16 13 C 0.24 10.91 6.64 38.16 0.25 11.16 16 14 N -0.74 -26.79 5.56 -339.57 -1.89 -28.68 16 15 C 0.14 3.97 4.55 86.38 0.39 4.37 16 16 C 0.09 1.87 2.58 44.94 0.12 1.99 16 17 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 18 C -0.15 -2.41 5.36 30.65 0.16 -2.24 16 19 C -0.12 -1.60 6.00 30.68 0.18 -1.41 16 20 C -0.15 -2.07 6.08 30.65 0.19 -1.89 16 21 C 0.06 0.96 6.55 86.33 0.57 1.53 16 22 N -0.69 -14.71 5.94 -491.68 -2.92 -17.63 16 23 C -0.31 -16.67 9.63 22.86 0.22 -16.45 16 24 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 25 H 0.10 5.59 6.17 -2.91 -0.02 5.58 16 26 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 27 H 0.11 4.41 6.70 -2.91 -0.02 4.39 16 28 H 0.40 14.00 8.15 -92.71 -0.76 13.24 16 29 H 0.05 1.52 7.95 -2.38 -0.02 1.50 16 30 H 0.04 1.29 7.93 -2.39 -0.02 1.27 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.34 7.36 8.79 -89.69 -0.79 6.57 16 40 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.86 319.87 0.19 -62.67 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.51 Total: 40.09 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 3.25 Total: -53.33 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -4.57 Total: -91.47 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -62.86 0.19 -62.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313490229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.749 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds