Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00379 * 2 1 4 4 H 1.48496 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46434 * 299.99529 * 3 2 1 6 6 H 1.48495 * 109.47118 * 59.99346 * 3 2 1 7 7 C 1.39933 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 197.89652 * 7 2 1 9 9 C 1.41411 * 119.99766 * 17.89175 * 7 2 1 10 10 C 1.40790 * 120.20586 * 24.45377 * 9 7 2 11 11 C 1.37647 * 119.89417 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32209 * 0.27198 * 11 10 9 13 13 C 1.39294 * 120.42749 * 359.45357 * 12 11 10 14 14 N 1.39678 * 119.95402 * 180.29844 * 13 12 11 15 15 C 1.46490 * 120.00112 * 0.24702 * 14 13 12 16 16 H 1.09004 * 109.57599 * 325.24804 * 15 14 13 17 17 C 1.54525 * 109.57491 * 205.00087 * 15 14 13 18 18 C 1.45879 * 111.67428 * 162.95944 * 17 15 14 19 19 C 1.53979 * 112.67096 * 61.49584 * 18 17 15 20 20 N 1.44307 * 108.31318 * 278.59733 * 19 18 17 21 21 C 1.47939 * 113.64472 * 95.39468 * 20 19 18 22 22 C 1.50541 * 109.57306 * 85.62399 * 15 14 13 23 23 C 1.38319 * 120.09389 * 0.54201 * 13 12 11 24 24 H 0.97000 * 119.99469 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05195 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.83771 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78552 * 179.69991 * 12 11 10 28 28 H 0.97001 * 119.99590 * 180.24546 * 14 13 12 29 29 H 1.09006 * 109.04109 * 283.52388 * 17 15 14 30 30 H 1.08997 * 109.03985 * 42.39224 * 17 15 14 31 31 H 1.08998 * 108.84304 * 182.32061 * 18 17 15 32 32 H 1.09003 * 108.83823 * 300.78016 * 18 17 15 33 33 H 1.09003 * 109.69585 * 38.29716 * 19 18 17 34 34 H 1.08998 * 109.69579 * 158.89443 * 19 18 17 35 35 H 1.00900 * 111.00040 * 221.35073 * 20 19 18 36 36 H 1.08998 * 108.70902 * 79.13424 * 21 20 19 37 37 H 1.09003 * 108.71119 * 197.14667 * 21 20 19 38 38 H 1.08996 * 108.79263 * 332.45547 * 22 15 14 39 39 H 1.08998 * 108.78926 * 90.67489 * 22 15 14 40 40 H 1.07998 * 120.16515 * 179.70632 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8837 2.3962 -1.2127 6 1 1.8836 2.3964 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2344 0.2880 9 6 1.3522 -2.4070 -0.3752 10 6 0.2217 -2.3614 -1.2131 11 6 -0.4120 -3.5287 -1.5744 12 6 0.0537 -4.7490 -1.1129 13 6 1.1743 -4.8102 -0.2879 14 7 1.6391 -6.0465 0.1666 15 6 0.9512 -7.2780 -0.2287 16 1 -0.1196 -7.0896 -0.3059 17 6 1.2087 -8.3766 0.8270 18 6 0.2527 -9.4721 0.7087 19 6 0.3324 -10.1848 -0.6538 20 7 -0.4147 -9.4102 -1.6152 21 6 0.4202 -8.4763 -2.4022 22 6 1.4804 -7.7467 -1.5579 23 6 1.8246 -3.6481 0.0860 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1481 -1.4121 -1.5711 26 1 -1.2788 -3.4927 -2.2175 27 1 -0.4531 -5.6592 -1.3979 28 1 2.4173 -6.0896 0.7441 29 1 2.2171 -8.7686 0.6936 30 1 1.1274 -7.9395 1.8221 31 1 0.4496 -10.1979 1.4977 32 1 -0.7544 -9.0759 0.8388 33 1 1.3730 -10.2577 -0.9700 34 1 -0.0981 -11.1828 -0.5721 35 1 -0.9558 -10.0094 -2.2204 36 1 0.9249 -9.0368 -3.1890 37 1 -0.2286 -7.7337 -2.8666 38 1 1.8408 -6.8831 -2.1167 39 1 2.3170 -8.4234 -1.3838 40 1 2.6908 -3.6938 0.7294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313499907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = 15.505143 kcal Electronic energy + Delta-G solvation = -19355.730583 eV Core-core repulsion = 16555.185449 eV Total energy + Delta-G solvation = -2800.545134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.18777 -37.38292 -35.00625 -33.38482 -32.63664 -30.91746 -29.63516 -27.31602 -25.41429 -25.07988 -24.15320 -21.13212 -20.39102 -20.07046 -19.37622 -17.29049 -16.71993 -15.60097 -15.39729 -15.15962 -14.69583 -14.27610 -14.15399 -13.70082 -13.23322 -12.79663 -12.69275 -12.47922 -12.42946 -12.01898 -11.49042 -11.35618 -11.14242 -11.06130 -10.95632 -10.76291 -10.56338 -10.42612 -10.39289 -10.16651 -9.65497 -9.22606 -9.15432 -8.69021 -8.33592 -7.31074 -6.65056 -6.11841 -4.24505 2.89683 3.13422 3.19176 3.28861 3.44199 4.01377 4.11914 4.29868 4.77932 4.83041 4.91161 5.03107 5.19077 5.28618 5.51155 5.56811 5.66143 5.76715 5.86028 5.91264 6.04900 6.12707 6.21943 6.34648 6.39883 6.45170 6.55794 6.71350 7.11004 7.12057 7.17617 7.18312 7.37185 7.42477 7.49273 7.88511 8.00004 8.22203 8.33568 8.59409 8.74914 8.86869 9.06886 9.20086 10.30919 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045362 B = 0.004130 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.112705 B = 6777.659158 C = 7033.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.141 3.859 10 C -0.200 4.200 11 C -0.076 4.076 12 C -0.299 4.299 13 C 0.226 3.774 14 N -0.761 5.761 15 C 0.170 3.830 16 H 0.086 0.914 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.066 3.934 20 N -0.700 5.700 21 C 0.069 3.931 22 C -0.134 4.134 23 C -0.291 4.291 24 H 0.277 0.723 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.384 0.616 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.342 0.658 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -15.042 -1.688 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.138 3.862 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.322 4.322 13 C 0.127 3.873 14 N -0.393 5.393 15 C 0.064 3.936 16 H 0.104 0.896 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.064 4.064 20 N -0.332 5.332 21 C -0.060 4.060 22 C -0.174 4.174 23 C -0.315 4.315 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.217 0.783 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.254 -14.514 -1.304 14.575 hybrid contribution 1.081 0.137 -0.340 1.142 sum 1.336 -14.377 -1.644 14.532 Atomic orbital electron populations 1.69878 1.07525 1.28763 1.35650 1.25878 0.94652 1.01099 0.92324 0.86342 0.81041 0.81322 0.78434 1.18511 1.19797 1.20127 1.19570 0.98044 0.91321 1.40635 0.90715 1.17334 0.90338 0.91279 0.87267 1.21163 1.00642 0.96620 1.03648 1.20445 0.97662 0.92967 0.98407 1.19928 1.02863 0.96591 1.12819 1.17466 0.92859 0.83981 0.92953 1.44606 1.34339 1.02818 1.57502 1.20323 0.98037 0.83801 0.91469 0.89638 1.20817 0.99272 0.96258 0.99770 1.20448 1.00975 0.97297 0.96373 1.21604 0.96702 0.95075 0.92972 1.59017 1.29061 1.23851 1.21260 1.22182 0.94827 0.94990 0.94001 1.21985 0.97282 1.00098 0.98027 1.20405 1.06702 0.91637 1.12758 0.91172 0.86878 0.89784 0.89305 0.78293 0.92770 0.91686 0.92429 0.90932 0.94233 0.92039 0.84027 0.95701 0.90764 0.90317 0.93154 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.21 10.96 55.55 0.61 -20.60 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.47 -12.82 9.05 -37.74 -0.34 -13.16 16 8 H 0.07 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.90 5.57 -106.85 -0.60 3.31 16 10 C -0.20 -5.44 8.70 -38.83 -0.34 -5.78 16 11 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 12 C -0.30 -6.94 9.19 -39.08 -0.36 -7.30 16 13 C 0.23 5.17 6.52 -83.86 -0.55 4.63 16 14 N -0.76 -13.97 5.15 -52.64 -0.27 -14.24 16 15 C 0.17 2.62 1.85 -68.36 -0.13 2.49 16 16 H 0.09 1.52 6.11 -51.93 -0.32 1.20 16 17 C -0.12 -1.54 4.84 -29.30 -0.14 -1.68 16 18 C -0.11 -1.22 5.38 -29.59 -0.16 -1.38 16 19 C 0.07 0.66 6.15 -4.70 -0.03 0.63 16 20 N -0.70 -7.61 6.18 -113.78 -0.70 -8.32 16 21 C 0.07 0.84 6.44 -2.77 -0.02 0.82 16 22 C -0.13 -1.89 4.91 -27.48 -0.14 -2.02 16 23 C -0.29 -7.41 9.63 -38.67 -0.37 -7.78 16 24 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 25 H 0.11 3.17 6.15 -52.49 -0.32 2.84 16 26 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.89 6.18 -52.48 -0.32 1.57 16 28 H 0.38 6.52 8.62 -40.82 -0.35 6.17 16 29 H 0.05 0.63 7.59 -51.93 -0.39 0.24 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.04 0.40 6.79 -51.93 -0.35 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.34 3.01 8.89 -39.29 -0.35 2.66 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.29 7.85 -51.93 -0.41 0.88 16 39 H 0.05 0.65 6.66 -51.93 -0.35 0.30 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -28.64 312.52 -10.43 -39.07 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.09 Total: 12.77 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -3.65 Total: -27.56 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.37 Total: -43.15 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.64 -10.43 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.571 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds