Wall clock time and date at job start Mon Mar 30 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00379 * 2 1 4 4 H 1.48496 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46434 * 299.99529 * 3 2 1 6 6 H 1.48495 * 109.47118 * 59.99346 * 3 2 1 7 7 C 1.39933 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 197.89652 * 7 2 1 9 9 C 1.41411 * 119.99766 * 17.89175 * 7 2 1 10 10 C 1.40790 * 120.20586 * 24.45377 * 9 7 2 11 11 C 1.37647 * 119.89417 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32209 * 0.27198 * 11 10 9 13 13 C 1.39294 * 120.42749 * 359.45357 * 12 11 10 14 14 N 1.39678 * 119.95402 * 180.29844 * 13 12 11 15 15 C 1.46490 * 120.00112 * 0.24702 * 14 13 12 16 16 H 1.09004 * 109.57599 * 325.24804 * 15 14 13 17 17 C 1.54525 * 109.57491 * 205.00087 * 15 14 13 18 18 C 1.45879 * 111.67428 * 162.95944 * 17 15 14 19 19 C 1.53979 * 112.67096 * 61.49584 * 18 17 15 20 20 N 1.44307 * 108.31318 * 278.59733 * 19 18 17 21 21 C 1.47939 * 113.64472 * 95.39468 * 20 19 18 22 22 C 1.50541 * 109.57306 * 85.62399 * 15 14 13 23 23 C 1.38319 * 120.09389 * 0.54201 * 13 12 11 24 24 H 0.97000 * 119.99469 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05195 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.83771 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78552 * 179.69991 * 12 11 10 28 28 H 0.97001 * 119.99590 * 180.24546 * 14 13 12 29 29 H 1.09006 * 109.04109 * 283.52388 * 17 15 14 30 30 H 1.08997 * 109.03985 * 42.39224 * 17 15 14 31 31 H 1.08998 * 108.84304 * 182.32061 * 18 17 15 32 32 H 1.09003 * 108.83823 * 300.78016 * 18 17 15 33 33 H 1.09003 * 109.69585 * 38.29716 * 19 18 17 34 34 H 1.08998 * 109.69579 * 158.89443 * 19 18 17 35 35 H 1.00900 * 111.00040 * 221.35073 * 20 19 18 36 36 H 1.08998 * 108.70902 * 79.13424 * 21 20 19 37 37 H 1.09003 * 108.71119 * 197.14667 * 21 20 19 38 38 H 1.08996 * 108.79263 * 332.45547 * 22 15 14 39 39 H 1.08998 * 108.78926 * 90.67489 * 22 15 14 40 40 H 1.07998 * 120.16515 * 179.70632 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8837 2.3962 -1.2127 6 1 1.8836 2.3964 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2344 0.2880 9 6 1.3522 -2.4070 -0.3752 10 6 0.2217 -2.3614 -1.2131 11 6 -0.4120 -3.5287 -1.5744 12 6 0.0537 -4.7490 -1.1129 13 6 1.1743 -4.8102 -0.2879 14 7 1.6391 -6.0465 0.1666 15 6 0.9512 -7.2780 -0.2287 16 1 -0.1196 -7.0896 -0.3059 17 6 1.2087 -8.3766 0.8270 18 6 0.2527 -9.4721 0.7087 19 6 0.3324 -10.1848 -0.6538 20 7 -0.4147 -9.4102 -1.6152 21 6 0.4202 -8.4763 -2.4022 22 6 1.4804 -7.7467 -1.5579 23 6 1.8246 -3.6481 0.0860 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1481 -1.4121 -1.5711 26 1 -1.2788 -3.4927 -2.2175 27 1 -0.4531 -5.6592 -1.3979 28 1 2.4173 -6.0896 0.7441 29 1 2.2171 -8.7686 0.6936 30 1 1.1274 -7.9395 1.8221 31 1 0.4496 -10.1979 1.4977 32 1 -0.7544 -9.0759 0.8388 33 1 1.3730 -10.2577 -0.9700 34 1 -0.0981 -11.1828 -0.5721 35 1 -0.9558 -10.0094 -2.2204 36 1 0.9249 -9.0368 -3.1890 37 1 -0.2286 -7.7337 -2.8666 38 1 1.8408 -6.8831 -2.1167 39 1 2.3170 -8.4234 -1.3838 40 1 2.6908 -3.6938 0.7294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313499907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:26 Heat of formation + Delta-G solvation = -2.071106 kcal Electronic energy + Delta-G solvation = -19356.492747 eV Core-core repulsion = 16555.185449 eV Total energy + Delta-G solvation = -2801.307297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43122 -39.04827 -36.52592 -35.05847 -33.76484 -32.30432 -31.59886 -28.97583 -27.13230 -26.29920 -25.37602 -22.84951 -22.17277 -21.16692 -20.68272 -19.14019 -17.76899 -17.32458 -16.77724 -16.55266 -16.28380 -15.84043 -15.36910 -14.86262 -14.64365 -14.43665 -14.04505 -13.95886 -13.82254 -13.50131 -13.20920 -12.86855 -12.79097 -12.53787 -12.42106 -12.06669 -11.91733 -11.67268 -11.55258 -11.50370 -11.37979 -11.13732 -11.02988 -10.45203 -9.32227 -9.19237 -8.59640 -7.90972 -6.31226 1.05786 1.35848 1.39573 1.54401 1.60074 2.23571 2.78930 2.82282 3.31901 3.72904 3.86357 4.00789 4.17537 4.22102 4.30313 4.46082 4.54613 4.59321 4.72091 4.74522 4.80549 4.86117 5.08108 5.13759 5.17910 5.18293 5.19700 5.27430 5.30308 5.39062 5.45451 5.51657 5.64605 5.98837 6.04994 6.22724 6.26142 6.33831 6.64024 6.66751 6.92308 7.03813 7.09231 7.28989 8.38854 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045362 B = 0.004130 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.112705 B = 6777.659158 C = 7033.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.113 3.887 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.299 4.299 13 C 0.237 3.763 14 N -0.752 5.752 15 C 0.168 3.832 16 H 0.064 0.936 17 C -0.115 4.115 18 C -0.112 4.112 19 C 0.067 3.933 20 N -0.709 5.709 21 C 0.074 3.926 22 C -0.128 4.128 23 C -0.314 4.314 24 H 0.286 0.714 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.393 0.607 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.355 0.645 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -16.823 -1.651 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.095 4.095 12 C -0.322 4.322 13 C 0.135 3.865 14 N -0.382 5.382 15 C 0.062 3.938 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.063 4.063 20 N -0.342 5.342 21 C -0.055 4.055 22 C -0.168 4.168 23 C -0.339 4.339 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.226 0.774 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.175 0.825 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.610 -16.358 -1.263 16.418 hybrid contribution 0.923 0.521 -0.332 1.111 sum 1.533 -15.837 -1.595 15.991 Atomic orbital electron populations 1.69933 1.09056 1.30272 1.35777 1.26764 0.95462 1.04472 0.91166 0.85173 0.79364 0.76220 0.78970 1.18272 1.18810 1.18959 1.19824 0.98213 0.92688 1.42647 0.91068 1.17698 0.91024 0.92422 0.87862 1.21090 1.01907 0.96815 1.05525 1.20720 0.97906 0.92716 0.98119 1.20159 1.02872 0.96853 1.12335 1.17512 0.92083 0.85081 0.91779 1.44704 1.34412 1.02389 1.56735 1.20506 0.96423 0.83322 0.93509 0.91808 1.20772 1.00708 0.95647 0.98161 1.20460 0.99420 0.97182 0.98033 1.21650 0.96964 0.95831 0.91807 1.58947 1.29177 1.24429 1.21684 1.22043 0.94278 0.95144 0.94082 1.21867 0.98430 0.99609 0.96871 1.20528 1.07471 0.92111 1.13755 0.90302 0.88626 0.87630 0.87251 0.77359 0.91265 0.92298 0.90176 0.92501 0.93988 0.89628 0.82505 0.93975 0.92221 0.92982 0.91565 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 10.96 21.82 0.24 -45.07 16 2 C 0.04 1.91 5.14 85.25 0.44 2.35 16 3 Si 0.98 39.86 29.59 68.60 2.03 41.89 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.11 6.51 5.57 -21.31 -0.12 6.39 16 10 C -0.23 -13.12 8.70 22.75 0.20 -12.92 16 11 C -0.08 -3.78 10.02 22.20 0.22 -3.56 16 12 C -0.30 -13.88 9.19 22.59 0.21 -13.67 16 13 C 0.24 10.92 6.52 38.16 0.25 11.17 16 14 N -0.75 -27.07 5.15 -320.46 -1.65 -28.72 16 15 C 0.17 4.93 1.85 44.72 0.08 5.01 16 16 H 0.06 2.19 6.11 -2.38 -0.01 2.18 16 17 C -0.11 -2.60 4.84 28.93 0.14 -2.46 16 18 C -0.11 -2.12 5.38 28.74 0.15 -1.96 16 19 C 0.07 1.09 6.15 87.12 0.54 1.63 16 20 N -0.71 -13.52 6.18 -513.90 -3.17 -16.69 16 21 C 0.07 1.64 6.44 86.41 0.56 2.20 16 22 C -0.13 -3.39 4.91 30.11 0.15 -3.24 16 23 C -0.31 -16.47 9.63 22.86 0.22 -16.25 16 24 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 25 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 26 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 27 H 0.11 4.58 6.18 -2.91 -0.02 4.56 16 28 H 0.39 12.95 8.62 -92.71 -0.80 12.16 16 29 H 0.07 1.38 7.59 -2.38 -0.02 1.37 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.04 0.69 6.79 -2.39 -0.02 0.67 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.36 5.21 8.89 -89.69 -0.80 4.41 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.66 7.85 -2.39 -0.02 1.64 16 39 H 0.07 1.53 6.66 -2.39 -0.02 1.52 16 40 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -63.71 312.52 0.14 -63.56 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.55 Total: 38.95 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 3.25 Total: -53.93 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.58 Total: -90.48 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -63.71 0.14 -63.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.493 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds