Wall clock time and date at job start Mon Mar 30 2020 06:40:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30830 * 1
3 3 Si 1.86798 * 120.00379 * 2 1
4 4 H 1.48496 * 109.47271 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.46434 * 299.99529 * 3 2 1
6 6 H 1.48495 * 109.47118 * 59.99346 * 3 2 1
7 7 C 1.39933 * 120.00092 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00205 * 197.89652 * 7 2 1
9 9 C 1.41411 * 119.99766 * 17.89175 * 7 2 1
10 10 C 1.40790 * 120.20586 * 24.45377 * 9 7 2
11 11 C 1.37647 * 119.89417 * 180.02562 * 10 9 7
12 12 C 1.38525 * 120.32209 * 0.27198 * 11 10 9
13 13 C 1.39294 * 120.42749 * 359.45357 * 12 11 10
14 14 N 1.39678 * 119.95402 * 180.29844 * 13 12 11
15 15 C 1.46490 * 120.00112 * 0.24702 * 14 13 12
16 16 H 1.09004 * 109.57599 * 325.24804 * 15 14 13
17 17 C 1.54525 * 109.57491 * 205.00087 * 15 14 13
18 18 C 1.45879 * 111.67428 * 162.95944 * 17 15 14
19 19 C 1.53979 * 112.67096 * 61.49584 * 18 17 15
20 20 N 1.44307 * 108.31318 * 278.59733 * 19 18 17
21 21 C 1.47939 * 113.64472 * 95.39468 * 20 19 18
22 22 C 1.50541 * 109.57306 * 85.62399 * 15 14 13
23 23 C 1.38319 * 120.09389 * 0.54201 * 13 12 11
24 24 H 0.97000 * 119.99469 * 0.02562 * 1 2 3
25 25 H 1.07993 * 120.05195 * 359.97438 * 10 9 7
26 26 H 1.07994 * 119.83771 * 180.02562 * 11 10 9
27 27 H 1.08007 * 119.78552 * 179.69991 * 12 11 10
28 28 H 0.97001 * 119.99590 * 180.24546 * 14 13 12
29 29 H 1.09006 * 109.04109 * 283.52388 * 17 15 14
30 30 H 1.08997 * 109.03985 * 42.39224 * 17 15 14
31 31 H 1.08998 * 108.84304 * 182.32061 * 18 17 15
32 32 H 1.09003 * 108.83823 * 300.78016 * 18 17 15
33 33 H 1.09003 * 109.69585 * 38.29716 * 19 18 17
34 34 H 1.08998 * 109.69579 * 158.89443 * 19 18 17
35 35 H 1.00900 * 111.00040 * 221.35073 * 20 19 18
36 36 H 1.08998 * 108.70902 * 79.13424 * 21 20 19
37 37 H 1.09003 * 108.71119 * 197.14667 * 21 20 19
38 38 H 1.08996 * 108.79263 * 332.45547 * 22 15 14
39 39 H 1.08998 * 108.78926 * 90.67489 * 22 15 14
40 40 H 1.07998 * 120.16515 * 179.70632 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6177 0.0000
4 1 3.7023 1.3463 -0.0006
5 1 1.8837 2.3962 -1.2127
6 1 1.8836 2.3964 1.2124
7 6 2.0080 -1.2118 0.0005
8 1 3.0488 -1.2344 0.2880
9 6 1.3522 -2.4070 -0.3752
10 6 0.2217 -2.3614 -1.2131
11 6 -0.4120 -3.5287 -1.5744
12 6 0.0537 -4.7490 -1.1129
13 6 1.1743 -4.8102 -0.2879
14 7 1.6391 -6.0465 0.1666
15 6 0.9512 -7.2780 -0.2287
16 1 -0.1196 -7.0896 -0.3059
17 6 1.2087 -8.3766 0.8270
18 6 0.2527 -9.4721 0.7087
19 6 0.3324 -10.1848 -0.6538
20 7 -0.4147 -9.4102 -1.6152
21 6 0.4202 -8.4763 -2.4022
22 6 1.4804 -7.7467 -1.5579
23 6 1.8246 -3.6481 0.0860
24 1 -0.4849 0.8401 -0.0004
25 1 -0.1481 -1.4121 -1.5711
26 1 -1.2788 -3.4927 -2.2175
27 1 -0.4531 -5.6592 -1.3979
28 1 2.4173 -6.0896 0.7441
29 1 2.2171 -8.7686 0.6936
30 1 1.1274 -7.9395 1.8221
31 1 0.4496 -10.1979 1.4977
32 1 -0.7544 -9.0759 0.8388
33 1 1.3730 -10.2577 -0.9700
34 1 -0.0981 -11.1828 -0.5721
35 1 -0.9558 -10.0094 -2.2204
36 1 0.9249 -9.0368 -3.1890
37 1 -0.2286 -7.7337 -2.8666
38 1 1.8408 -6.8831 -2.1167
39 1 2.3170 -8.4234 -1.3838
40 1 2.6908 -3.6938 0.7294
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000313499907.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:40:26
Heat of formation + Delta-G solvation = -2.071106 kcal
Electronic energy + Delta-G solvation = -19356.492747 eV
Core-core repulsion = 16555.185449 eV
Total energy + Delta-G solvation = -2801.307297 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.43122 -39.04827 -36.52592 -35.05847 -33.76484 -32.30432 -31.59886 -28.97583
-27.13230 -26.29920 -25.37602 -22.84951 -22.17277 -21.16692 -20.68272 -19.14019
-17.76899 -17.32458 -16.77724 -16.55266 -16.28380 -15.84043 -15.36910 -14.86262
-14.64365 -14.43665 -14.04505 -13.95886 -13.82254 -13.50131 -13.20920 -12.86855
-12.79097 -12.53787 -12.42106 -12.06669 -11.91733 -11.67268 -11.55258 -11.50370
-11.37979 -11.13732 -11.02988 -10.45203 -9.32227 -9.19237 -8.59640 -7.90972
-6.31226 1.05786 1.35848 1.39573 1.54401 1.60074 2.23571 2.78930
2.82282 3.31901 3.72904 3.86357 4.00789 4.17537 4.22102 4.30313
4.46082 4.54613 4.59321 4.72091 4.74522 4.80549 4.86117 5.08108
5.13759 5.17910 5.18293 5.19700 5.27430 5.30308 5.39062 5.45451
5.51657 5.64605 5.98837 6.04994 6.22724 6.26142 6.33831 6.64024
6.66751 6.92308 7.03813 7.09231 7.28989 8.38854
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.045362 B = 0.004130 C = 0.003980
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.112705 B = 6777.659158 C = 7033.554538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.824 5.824
2 C 0.036 3.964
3 Si 0.982 3.018
4 H -0.259 1.259
5 H -0.264 1.264
6 H -0.265 1.265
7 C -0.504 4.504
8 H 0.071 0.929
9 C 0.113 3.887
10 C -0.233 4.233
11 C -0.076 4.076
12 C -0.299 4.299
13 C 0.237 3.763
14 N -0.752 5.752
15 C 0.168 3.832
16 H 0.064 0.936
17 C -0.115 4.115
18 C -0.112 4.112
19 C 0.067 3.933
20 N -0.709 5.709
21 C 0.074 3.926
22 C -0.128 4.128
23 C -0.314 4.314
24 H 0.286 0.714
25 H 0.096 0.904
26 H 0.106 0.894
27 H 0.110 0.890
28 H 0.393 0.607
29 H 0.069 0.931
30 H 0.058 0.942
31 H 0.080 0.920
32 H 0.056 0.944
33 H 0.042 0.958
34 H 0.085 0.915
35 H 0.355 0.645
36 H 0.042 0.958
37 H 0.059 0.941
38 H 0.051 0.949
39 H 0.066 0.934
40 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.084 -16.823 -1.651 16.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C -0.179 4.179
3 Si 0.803 3.197
4 H -0.183 1.183
5 H -0.188 1.188
6 H -0.190 1.190
7 C -0.534 4.534
8 H 0.089 0.911
9 C 0.110 3.890
10 C -0.253 4.253
11 C -0.095 4.095
12 C -0.322 4.322
13 C 0.135 3.865
14 N -0.382 5.382
15 C 0.062 3.938
16 H 0.082 0.918
17 C -0.153 4.153
18 C -0.151 4.151
19 C -0.063 4.063
20 N -0.342 5.342
21 C -0.055 4.055
22 C -0.168 4.168
23 C -0.339 4.339
24 H 0.097 0.903
25 H 0.114 0.886
26 H 0.124 0.876
27 H 0.127 0.873
28 H 0.226 0.774
29 H 0.087 0.913
30 H 0.077 0.923
31 H 0.098 0.902
32 H 0.075 0.925
33 H 0.060 0.940
34 H 0.104 0.896
35 H 0.175 0.825
36 H 0.060 0.940
37 H 0.078 0.922
38 H 0.070 0.930
39 H 0.084 0.916
40 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 0.610 -16.358 -1.263 16.418
hybrid contribution 0.923 0.521 -0.332 1.111
sum 1.533 -15.837 -1.595 15.991
Atomic orbital electron populations
1.69933 1.09056 1.30272 1.35777 1.26764 0.95462 1.04472 0.91166
0.85173 0.79364 0.76220 0.78970 1.18272 1.18810 1.18959 1.19824
0.98213 0.92688 1.42647 0.91068 1.17698 0.91024 0.92422 0.87862
1.21090 1.01907 0.96815 1.05525 1.20720 0.97906 0.92716 0.98119
1.20159 1.02872 0.96853 1.12335 1.17512 0.92083 0.85081 0.91779
1.44704 1.34412 1.02389 1.56735 1.20506 0.96423 0.83322 0.93509
0.91808 1.20772 1.00708 0.95647 0.98161 1.20460 0.99420 0.97182
0.98033 1.21650 0.96964 0.95831 0.91807 1.58947 1.29177 1.24429
1.21684 1.22043 0.94278 0.95144 0.94082 1.21867 0.98430 0.99609
0.96871 1.20528 1.07471 0.92111 1.13755 0.90302 0.88626 0.87630
0.87251 0.77359 0.91265 0.92298 0.90176 0.92501 0.93988 0.89628
0.82505 0.93975 0.92221 0.92982 0.91565 0.89274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -45.31 10.96 21.82 0.24 -45.07 16
2 C 0.04 1.91 5.14 85.25 0.44 2.35 16
3 Si 0.98 39.86 29.59 68.60 2.03 41.89 16
4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16
5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16
6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
7 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16
8 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16
9 C 0.11 6.51 5.57 -21.31 -0.12 6.39 16
10 C -0.23 -13.12 8.70 22.75 0.20 -12.92 16
11 C -0.08 -3.78 10.02 22.20 0.22 -3.56 16
12 C -0.30 -13.88 9.19 22.59 0.21 -13.67 16
13 C 0.24 10.92 6.52 38.16 0.25 11.17 16
14 N -0.75 -27.07 5.15 -320.46 -1.65 -28.72 16
15 C 0.17 4.93 1.85 44.72 0.08 5.01 16
16 H 0.06 2.19 6.11 -2.38 -0.01 2.18 16
17 C -0.11 -2.60 4.84 28.93 0.14 -2.46 16
18 C -0.11 -2.12 5.38 28.74 0.15 -1.96 16
19 C 0.07 1.09 6.15 87.12 0.54 1.63 16
20 N -0.71 -13.52 6.18 -513.90 -3.17 -16.69 16
21 C 0.07 1.64 6.44 86.41 0.56 2.20 16
22 C -0.13 -3.39 4.91 30.11 0.15 -3.24 16
23 C -0.31 -16.47 9.63 22.86 0.22 -16.25 16
24 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16
25 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16
26 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16
27 H 0.11 4.58 6.18 -2.91 -0.02 4.56 16
28 H 0.39 12.95 8.62 -92.71 -0.80 12.16 16
29 H 0.07 1.38 7.59 -2.38 -0.02 1.37 16
30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16
33 H 0.04 0.69 6.79 -2.39 -0.02 0.67 16
34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
35 H 0.36 5.21 8.89 -89.69 -0.80 4.41 16
36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16
37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.05 1.66 7.85 -2.39 -0.02 1.64 16
39 H 0.07 1.53 6.66 -2.39 -0.02 1.52 16
40 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16
Total: -1.00 -63.71 312.52 0.14 -63.56
By element:
Atomic # 1 Polarization: 39.50 SS G_CDS: -0.55 Total: 38.95 kcal
Atomic # 6 Polarization: -57.18 SS G_CDS: 3.25 Total: -53.93 kcal
Atomic # 7 Polarization: -85.89 SS G_CDS: -4.58 Total: -90.48 kcal
Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal
Total: -63.71 0.14 -63.56 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313499907.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.493 kcal
(2) G-P(sol) polarization free energy of solvation -63.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds