Wall clock time and date at job start Mon Mar 30 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47227 * 240.00181 * 3 2 1 5 5 H 1.48491 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47209 * 120.00266 * 3 2 1 7 7 C 1.39936 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 197.88616 * 7 2 1 9 9 C 1.41411 * 119.99765 * 17.87530 * 7 2 1 10 10 C 1.40779 * 120.20968 * 204.42852 * 9 7 2 11 11 C 1.37639 * 119.89517 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32856 * 359.75142 * 11 10 9 13 13 C 1.39295 * 120.41977 * 0.50971 * 12 11 10 14 14 N 1.39689 * 119.95297 * 179.77038 * 13 12 11 15 15 C 1.46505 * 119.99790 * 359.71767 * 14 13 12 16 16 H 1.09002 * 108.91759 * 35.00558 * 15 14 13 17 17 C 1.45870 * 108.93690 * 153.71285 * 15 14 13 18 18 C 1.54307 * 112.18789 * 181.72903 * 17 15 14 19 19 C 1.50446 * 108.50029 * 281.46203 * 18 17 15 20 20 N 1.48001 * 112.82615 * 93.72383 * 19 18 17 21 21 C 1.47998 * 114.62969 * 318.09622 * 20 19 18 22 22 C 1.50442 * 112.83159 * 318.08808 * 21 20 19 23 23 C 1.38317 * 120.09555 * 359.48516 * 13 12 11 24 24 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05120 * 0.05164 * 10 9 7 26 26 H 1.08006 * 119.83578 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.79192 * 180.28014 * 12 11 10 28 28 H 0.96995 * 120.00176 * 179.72645 * 14 13 12 29 29 H 1.08999 * 108.94417 * 302.42646 * 17 15 14 30 30 H 1.09006 * 108.93950 * 61.12148 * 17 15 14 31 31 H 1.09000 * 109.63147 * 41.16831 * 18 17 15 32 32 H 1.09004 * 109.63615 * 161.56320 * 18 17 15 33 33 H 1.08999 * 108.81639 * 214.59066 * 19 18 17 34 34 H 1.09004 * 108.80979 * 332.97976 * 19 18 17 35 35 H 1.00896 * 111.00364 * 191.34947 * 20 19 18 36 36 H 1.08998 * 108.81473 * 78.95220 * 21 20 19 37 37 H 1.09002 * 108.81422 * 197.33096 * 21 20 19 38 38 H 1.09005 * 109.63120 * 334.02463 * 22 21 20 39 39 H 1.09003 * 109.63551 * 213.43615 * 22 21 20 40 40 H 1.08004 * 120.15886 * 180.27521 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2867 9 6 1.3521 -2.4068 -0.3770 10 6 1.8260 -3.6501 0.0830 11 6 1.1829 -4.8091 -0.2879 12 6 0.0678 -4.7587 -1.1080 13 6 -0.4093 -3.5362 -1.5752 14 7 -1.5319 -3.4970 -2.4057 15 6 -2.2028 -4.7415 -2.7896 16 1 -2.1542 -5.4412 -1.9552 17 6 -3.6019 -4.4534 -3.0850 18 6 -4.3926 -5.7249 -3.4581 19 6 -4.0786 -6.0804 -4.8859 20 7 -2.9724 -7.0565 -5.0046 21 6 -1.8315 -6.8093 -4.0950 22 6 -1.4658 -5.3531 -3.9996 23 6 0.2233 -2.3606 -1.2134 24 1 -0.4850 0.8401 0.0004 25 1 2.6924 -3.6943 0.7262 26 1 1.5470 -5.7624 0.0659 27 1 -0.4328 -5.6731 -1.3899 28 1 -1.8671 -2.6459 -2.7282 29 1 -4.0615 -3.9955 -2.2090 30 1 -3.6505 -3.7512 -3.9173 31 1 -4.0978 -6.5449 -2.8032 32 1 -5.4609 -5.5367 -3.3510 33 1 -4.9711 -6.5029 -5.3474 34 1 -3.8028 -5.1722 -5.4217 35 1 -2.6615 -7.1361 -5.9612 36 1 -2.0897 -7.1726 -3.1003 37 1 -0.9662 -7.3643 -4.4575 38 1 -1.7693 -4.8388 -4.9115 39 1 -0.3892 -5.2541 -3.8609 40 1 -0.1484 -1.4119 -1.5715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313499909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:30 Heat of formation + Delta-G solvation = 16.790125 kcal Electronic energy + Delta-G solvation = -19479.348887 eV Core-core repulsion = 16678.859474 eV Total energy + Delta-G solvation = -2800.489413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.42001 -37.42412 -34.97315 -33.40665 -32.42731 -31.04554 -29.40914 -27.51339 -25.52793 -25.13517 -24.12696 -21.37685 -20.35699 -19.89343 -19.66387 -17.24938 -16.69563 -15.70842 -15.54479 -14.93587 -14.73922 -14.45214 -14.10134 -13.53078 -13.22641 -12.85569 -12.57802 -12.43701 -12.32430 -12.12317 -11.76831 -11.35023 -11.29408 -11.10050 -11.00993 -10.88102 -10.65487 -10.52289 -10.33922 -10.30100 -9.58166 -9.40676 -9.20570 -8.75472 -8.36988 -7.28291 -6.70982 -6.13323 -4.29023 2.90250 3.09565 3.13132 3.25732 3.36668 3.98930 4.06521 4.26508 4.70738 4.76780 4.91112 5.01466 5.20545 5.33931 5.48538 5.63637 5.65331 5.72901 5.81576 5.86299 5.95980 6.03652 6.18791 6.25285 6.31523 6.34988 6.47235 6.66423 6.91746 7.03709 7.14405 7.16676 7.32408 7.40994 7.47161 7.84449 7.99207 8.14197 8.19922 8.51825 8.74322 8.86782 9.03806 9.15023 10.27744 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.004674 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.399621 B = 5988.670133 C = 6518.367134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.067 4.067 12 C -0.299 4.299 13 C 0.217 3.783 14 N -0.759 5.759 15 C 0.165 3.835 16 H 0.072 0.928 17 C -0.130 4.130 18 C -0.116 4.116 19 C 0.065 3.935 20 N -0.704 5.704 21 C 0.064 3.936 22 C -0.163 4.163 23 C -0.233 4.233 24 H 0.277 0.723 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.386 0.614 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.339 0.661 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -7.115 -8.302 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.279 4.279 11 C -0.085 4.085 12 C -0.322 4.322 13 C 0.119 3.881 14 N -0.391 5.391 15 C 0.058 3.942 16 H 0.090 0.910 17 C -0.168 4.168 18 C -0.155 4.155 19 C -0.063 4.063 20 N -0.335 5.335 21 C -0.065 4.065 22 C -0.204 4.204 23 C -0.257 4.257 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.811 -7.537 -7.829 13.383 hybrid contribution 0.643 1.930 -0.517 2.099 sum -7.168 -5.607 -8.346 12.348 Atomic orbital electron populations 1.69861 1.07505 1.28820 1.35711 1.25865 0.94654 1.01038 0.92315 0.86449 0.80209 0.80580 0.79907 1.18941 1.20493 1.19080 1.19528 0.98069 0.91372 1.40669 0.90657 1.17310 0.90087 0.91802 0.87193 1.20855 1.04919 0.92943 1.09142 1.20289 0.95172 0.96208 0.96872 1.19909 1.04323 0.94477 1.13445 1.17645 0.86386 0.94266 0.89851 1.44655 1.32022 1.06120 1.56262 1.19609 0.90565 0.88192 0.95810 0.91047 1.20878 0.95770 0.97984 1.02122 1.21325 0.99803 0.97779 0.96545 1.21601 0.93905 0.93773 0.97029 1.60243 1.11050 1.51401 1.10837 1.21671 0.91900 0.95105 0.97870 1.22487 1.02399 0.96469 0.99026 1.20728 1.02684 0.95059 1.07224 0.91190 0.89469 0.89703 0.89509 0.78041 0.91318 0.92173 0.90586 0.91007 0.91472 0.95219 0.84367 0.91114 0.91572 0.92534 0.90321 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.89 10.96 55.55 0.61 -20.28 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.05 29.60 -169.99 -5.03 14.02 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.14 3.82 5.57 -106.85 -0.60 3.23 16 10 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16 11 C -0.07 -1.55 10.01 -39.70 -0.40 -1.95 16 12 C -0.30 -6.77 8.87 -39.09 -0.35 -7.12 16 13 C 0.22 5.05 6.51 -83.86 -0.55 4.50 16 14 N -0.76 -14.36 5.18 -54.85 -0.28 -14.64 16 15 C 0.16 2.52 1.71 -70.62 -0.12 2.40 16 16 H 0.07 1.20 5.80 -51.93 -0.30 0.90 16 17 C -0.13 -1.65 4.65 -29.42 -0.14 -1.79 16 18 C -0.12 -1.25 5.63 -27.32 -0.15 -1.40 16 19 C 0.07 0.67 6.01 -4.49 -0.03 0.64 16 20 N -0.70 -7.58 6.89 -114.91 -0.79 -8.37 16 21 C 0.06 0.77 6.01 -4.50 -0.03 0.74 16 22 C -0.16 -2.29 5.02 -27.32 -0.14 -2.42 16 23 C -0.23 -6.13 8.54 -38.68 -0.33 -6.46 16 24 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 25 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 26 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 27 H 0.09 1.77 6.13 -52.49 -0.32 1.45 16 28 H 0.39 7.08 8.57 -40.82 -0.35 6.73 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 31 H 0.08 0.89 7.08 -51.93 -0.37 0.52 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.31 6.58 -51.93 -0.34 -0.03 16 35 H 0.34 3.16 8.91 -39.29 -0.35 2.81 16 36 H 0.07 0.91 6.59 -51.93 -0.34 0.57 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 7.08 -51.93 -0.37 0.40 16 39 H 0.08 1.30 7.74 -51.93 -0.40 0.89 16 40 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -27.99 309.48 -10.41 -38.40 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.94 Total: 13.96 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.63 Total: -27.74 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.47 Total: -43.30 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.99 -10.41 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.190 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds