Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47227 * 240.00181 * 3 2 1 5 5 H 1.48491 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47209 * 120.00266 * 3 2 1 7 7 C 1.39936 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 197.88616 * 7 2 1 9 9 C 1.41411 * 119.99765 * 17.87530 * 7 2 1 10 10 C 1.40779 * 120.20968 * 204.42852 * 9 7 2 11 11 C 1.37639 * 119.89517 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32856 * 359.75142 * 11 10 9 13 13 C 1.39295 * 120.41977 * 0.50971 * 12 11 10 14 14 N 1.39689 * 119.95297 * 179.77038 * 13 12 11 15 15 C 1.46505 * 119.99790 * 359.71767 * 14 13 12 16 16 H 1.09002 * 108.91759 * 35.00558 * 15 14 13 17 17 C 1.45870 * 108.93690 * 153.71285 * 15 14 13 18 18 C 1.54307 * 112.18789 * 181.72903 * 17 15 14 19 19 C 1.50446 * 108.50029 * 281.46203 * 18 17 15 20 20 N 1.48001 * 112.82615 * 93.72383 * 19 18 17 21 21 C 1.47998 * 114.62969 * 318.09622 * 20 19 18 22 22 C 1.50442 * 112.83159 * 318.08808 * 21 20 19 23 23 C 1.38317 * 120.09555 * 359.48516 * 13 12 11 24 24 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05120 * 0.05164 * 10 9 7 26 26 H 1.08006 * 119.83578 * 180.02562 * 11 10 9 27 27 H 1.07995 * 119.79192 * 180.28014 * 12 11 10 28 28 H 0.96995 * 120.00176 * 179.72645 * 14 13 12 29 29 H 1.08999 * 108.94417 * 302.42646 * 17 15 14 30 30 H 1.09006 * 108.93950 * 61.12148 * 17 15 14 31 31 H 1.09000 * 109.63147 * 41.16831 * 18 17 15 32 32 H 1.09004 * 109.63615 * 161.56320 * 18 17 15 33 33 H 1.08999 * 108.81639 * 214.59066 * 19 18 17 34 34 H 1.09004 * 108.80979 * 332.97976 * 19 18 17 35 35 H 1.00896 * 111.00364 * 191.34947 * 20 19 18 36 36 H 1.08998 * 108.81473 * 78.95220 * 21 20 19 37 37 H 1.09002 * 108.81422 * 197.33096 * 21 20 19 38 38 H 1.09005 * 109.63120 * 334.02463 * 22 21 20 39 39 H 1.09003 * 109.63551 * 213.43615 * 22 21 20 40 40 H 1.08004 * 120.15886 * 180.27521 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2867 9 6 1.3521 -2.4068 -0.3770 10 6 1.8260 -3.6501 0.0830 11 6 1.1829 -4.8091 -0.2879 12 6 0.0678 -4.7587 -1.1080 13 6 -0.4093 -3.5362 -1.5752 14 7 -1.5319 -3.4970 -2.4057 15 6 -2.2028 -4.7415 -2.7896 16 1 -2.1542 -5.4412 -1.9552 17 6 -3.6019 -4.4534 -3.0850 18 6 -4.3926 -5.7249 -3.4581 19 6 -4.0786 -6.0804 -4.8859 20 7 -2.9724 -7.0565 -5.0046 21 6 -1.8315 -6.8093 -4.0950 22 6 -1.4658 -5.3531 -3.9996 23 6 0.2233 -2.3606 -1.2134 24 1 -0.4850 0.8401 0.0004 25 1 2.6924 -3.6943 0.7262 26 1 1.5470 -5.7624 0.0659 27 1 -0.4328 -5.6731 -1.3899 28 1 -1.8671 -2.6459 -2.7282 29 1 -4.0615 -3.9955 -2.2090 30 1 -3.6505 -3.7512 -3.9173 31 1 -4.0978 -6.5449 -2.8032 32 1 -5.4609 -5.5367 -3.3510 33 1 -4.9711 -6.5029 -5.3474 34 1 -3.8028 -5.1722 -5.4217 35 1 -2.6615 -7.1361 -5.9612 36 1 -2.0897 -7.1726 -3.1003 37 1 -0.9662 -7.3643 -4.4575 38 1 -1.7693 -4.8388 -4.9115 39 1 -0.3892 -5.2541 -3.8609 40 1 -0.1484 -1.4119 -1.5715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313499909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = -0.583768 kcal Electronic energy + Delta-G solvation = -19480.102275 eV Core-core repulsion = 16678.859474 eV Total energy + Delta-G solvation = -2801.242802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65906 -39.09993 -36.44030 -35.19763 -33.51070 -32.38314 -31.34749 -29.09933 -27.16269 -26.52074 -25.26547 -23.10390 -21.95788 -21.30196 -20.77143 -19.11161 -17.87077 -17.36604 -16.80262 -16.42189 -16.26577 -16.01163 -15.29163 -14.95279 -14.64955 -14.17104 -14.09149 -13.95239 -13.67353 -13.56684 -13.23574 -13.00499 -12.78050 -12.60613 -12.23402 -12.20214 -12.04259 -11.98833 -11.61371 -11.56573 -11.38363 -11.25222 -11.04171 -10.47779 -9.26518 -9.24795 -8.62816 -7.90546 -6.32778 1.09121 1.33405 1.37230 1.48440 1.59053 2.22061 2.73557 2.81903 3.27933 3.65932 3.83851 3.93777 4.02417 4.24222 4.30926 4.46608 4.48738 4.58124 4.61818 4.75245 4.80073 4.85841 4.97466 5.00095 5.10452 5.16729 5.19035 5.24118 5.31686 5.32602 5.35320 5.47383 5.61143 5.96205 6.11042 6.14598 6.21183 6.27247 6.54472 6.57961 6.93876 7.05007 7.06368 7.25085 8.37502 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.004674 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.399621 B = 5988.670133 C = 6518.367134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.071 0.929 9 C 0.109 3.891 10 C -0.286 4.286 11 C -0.063 4.063 12 C -0.299 4.299 13 C 0.223 3.777 14 N -0.754 5.754 15 C 0.165 3.835 16 H 0.060 0.940 17 C -0.126 4.126 18 C -0.109 4.109 19 C 0.064 3.936 20 N -0.703 5.703 21 C 0.070 3.930 22 C -0.151 4.151 23 C -0.262 4.262 24 H 0.285 0.715 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.388 0.612 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.350 0.650 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -7.857 -9.400 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.307 4.307 11 C -0.082 4.082 12 C -0.322 4.322 13 C 0.122 3.878 14 N -0.384 5.384 15 C 0.060 3.940 16 H 0.078 0.922 17 C -0.164 4.164 18 C -0.147 4.147 19 C -0.065 4.065 20 N -0.336 5.336 21 C -0.060 4.060 22 C -0.192 4.192 23 C -0.287 4.287 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.222 0.778 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.168 0.832 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.937 -8.311 -8.955 15.137 hybrid contribution 0.890 2.044 -0.216 2.240 sum -8.047 -6.267 -9.171 13.716 Atomic orbital electron populations 1.69920 1.08927 1.30148 1.35903 1.26706 0.95461 1.04262 0.91228 0.85312 0.78854 0.75879 0.79976 1.18653 1.19123 1.18421 1.19797 0.98275 0.92804 1.42786 0.91047 1.17703 0.90975 0.92816 0.87912 1.21015 1.05890 0.93375 1.10412 1.20655 0.94701 0.96857 0.95957 1.20223 1.04099 0.95136 1.12719 1.17743 0.86929 0.93646 0.89476 1.44818 1.30772 1.07796 1.55037 1.19835 0.91981 0.86250 0.95935 0.92213 1.20832 0.94107 0.99388 1.02073 1.21302 1.00567 0.96108 0.96741 1.21661 0.94347 0.93815 0.96636 1.60253 1.10531 1.51419 1.11355 1.21556 0.92858 0.93437 0.98100 1.22351 1.00427 0.98035 0.98392 1.20666 1.03722 0.95475 1.08793 0.90473 0.89285 0.86440 0.86974 0.77829 0.92104 0.91527 0.91327 0.88984 0.89637 0.95254 0.83211 0.91773 0.90681 0.91954 0.92860 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.50 10.96 21.82 0.24 -44.26 16 2 C 0.04 2.00 5.14 85.25 0.44 2.44 16 3 Si 0.98 39.59 29.60 68.60 2.03 41.62 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.51 -28.79 9.05 23.46 0.21 -28.57 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 10 C -0.29 -14.98 9.79 22.75 0.22 -14.76 16 11 C -0.06 -2.90 10.01 22.19 0.22 -2.68 16 12 C -0.30 -13.36 8.87 22.59 0.20 -13.15 16 13 C 0.22 10.48 6.51 38.16 0.25 10.73 16 14 N -0.75 -28.43 5.18 -327.44 -1.70 -30.13 16 15 C 0.16 4.85 1.71 43.25 0.07 4.92 16 16 H 0.06 1.92 5.80 -2.39 -0.01 1.91 16 17 C -0.13 -2.99 4.65 28.85 0.13 -2.85 16 18 C -0.11 -2.04 5.63 30.21 0.17 -1.87 16 19 C 0.06 1.10 6.01 85.27 0.51 1.61 16 20 N -0.70 -13.12 6.89 -517.46 -3.56 -16.68 16 21 C 0.07 1.54 6.01 85.26 0.51 2.06 16 22 C -0.15 -4.02 5.02 30.21 0.15 -3.87 16 23 C -0.26 -14.30 8.54 22.86 0.20 -14.11 16 24 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 25 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.11 4.39 6.13 -2.91 -0.02 4.37 16 28 H 0.39 14.31 8.57 -92.71 -0.79 13.51 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.51 7.51 -2.38 -0.02 1.49 16 31 H 0.07 1.42 7.08 -2.39 -0.02 1.41 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.03 0.52 6.58 -2.38 -0.02 0.51 16 35 H 0.35 5.45 8.91 -89.70 -0.80 4.65 16 36 H 0.06 1.52 6.59 -2.39 -0.02 1.50 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.58 7.08 -2.38 -0.02 1.56 16 39 H 0.05 1.70 7.74 -2.39 -0.02 1.68 16 40 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 Total: -1.00 -61.85 309.48 -0.36 -62.21 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.54 Total: 41.24 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 3.18 Total: -54.00 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -5.02 Total: -91.07 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -61.85 -0.36 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313499909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.628 kcal (2) G-P(sol) polarization free energy of solvation -61.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds